Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 414 1e-110
seq13960 140 4e-28
seq7661 120 4e-22
seq608 102 1e-16
seq11415 91.5 2e-13
seq12849 84.2 3e-11
>seq8995
Length=8301158
Score = 414 bits (458), Expect = 1e-110
Identities = 626/890 (70%), Gaps = 3/890 (0%)
Strand=Plus/Plus
Query 32355 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 32414
||||| ||||||||| | || | || | || | || || || || ||||| || ||
Sbjct 6971359 GACATCACTCCCATTCTCTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 6971418
Query 32415 TCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAAT 32474
|| | ||| ||||||||||| || || || ||||| || || ||| || ||||
Sbjct 6971419 TCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAG 6971478
Query 32475 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 32534
|||| || || | ||||||||| || || || || || ||||||| |||
Sbjct 6971479 CCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAA 6971538
Query 32535 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 32594
||||| || || || || || || || ||| | ||||| || || ||||| || ||
Sbjct 6971539 TTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACT 6971598
Query 32595 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 32654
|| | || || ||||| | | || ||| | ||| | ||||| |||
Sbjct 6971599 GCATTGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAAC 6971658
Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714
|||| || | || || ||||| | |||||| ||||| ||||| | ||| |||||||||
Sbjct 6971659 ATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAAC 6971718
Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 32774
||||| || ||||| || || || || || ||||| ||||| |||||||| || || |||
Sbjct 6971719 GTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAA 6971778
Query 32775 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTG 32831
||||| || ||||| ||||| |||||||| | | | |||||||| | | | ||
Sbjct 6971779 AAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTG 6971838
Query 32832 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891
|| |||| |||||||| |||||||| || ||||||||||| ||||| ||
Sbjct 6971839 TCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATG 6971898
Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 32951
||||| |||||| | | |||| || |||||||| || || ||||| | ||||||
Sbjct 6971899 GCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTA 6971958
Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCG 33011
|||||||| ||||| |||||||| ||||| ||||| || || ||||| || |||||||
Sbjct 6971959 TACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCG 6972018
Query 33012 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 33071
|||||||| |||||| | ||| || || | || |||||||| ||||| || |||||
Sbjct 6972019 GTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTT 6972078
Query 33072 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33131
|||||||| || |||| ||||| ||||||||| | || || || | || | |
Sbjct 6972079 GCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCC 6972138
Query 33132 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191
|| | | || || || || | ||||| || || |||||||||| || ||||| ||
Sbjct 6972139 CAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCT 6972198
Query 33192 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241
|| |||||||| | ||| || ||||| |||| || ||||| || |||||
Sbjct 6972199 TTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 6972248
Score = 228 bits (252), Expect = 1e-54
Identities = 382/552 (69%), Gaps = 3/552 (1%)
Strand=Plus/Plus
Query 32355 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 32414
||||| ||||||||| | || || || || || | || || || || ||||| || ||
Sbjct 6968491 GACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 6968550
Query 32415 TCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAAT 32474
|| | ||| ||||||||||| || || || ||||| || || ||| || ||||
Sbjct 6968551 TCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAG 6968610
Query 32475 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 32534
|||| || || | ||||||||| || || || || || ||||||| |||
Sbjct 6968611 CCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAA 6968670
Query 32535 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 32594
||||| || || || || || || || ||| | ||||| || || ||||| || ||
Sbjct 6968671 TTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACT 6968730
Query 32595 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 32654
|| | || || ||||| | | || ||| | ||| | ||||| |||
Sbjct 6968731 GCATTGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAAC 6968790
Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714
|||| || | || || ||||| | |||||| ||||| ||||| | ||| |||||||||
Sbjct 6968791 ATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAAC 6968850
Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 32774
||||| || ||||| || || || || || ||||| ||||| |||||||| || || |||
Sbjct 6968851 GTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAA 6968910
Query 32775 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTG 32831
||||| || ||||| ||||| |||||||| | | | |||||||| | | | ||
Sbjct 6968911 AAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTG 6968970
Query 32832 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891
|| |||| |||||||| |||||||| || ||||||||||| ||||| ||
Sbjct 6968971 TCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATG 6969030
Query 32892 GCATTAAAGAGA 32903
||||| ||||||
Sbjct 6969031 GCATTGAAGAGA 6969042
>seq13960
Length=3940437
Score = 140 bits (154), Expect = 4e-28
Identities = 113/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251
|| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |
Sbjct 2049915 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 2049974
Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311
||||||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 2049975 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 2050034
Query 62312 CTATTTCTAAGACCGTA 62328
|| ||||| | ||| ||
Sbjct 2050035 CTGTTTCTTATACCATA 2050051
Score = 105 bits (116), Expect = 8e-18
Identities = 123/166 (74%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869
|||| |||| ||| || ||||||||||| | || || ||||| || || || || || |
Sbjct 2074044 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 2074103
Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929
|||||||||| || || | ||||| | || || ||| | || || |||| ||| ||||
Sbjct 2074104 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 2074163
Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975
||| || || || || ||| | |||| |||||||| || |||||
Sbjct 2074164 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2074209
Score = 91.5 bits (100), Expect = 2e-13
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489
|||| || || ||||| || | || || || | ||||| || || || || || || |
Sbjct 2054701 CATAGGTTTCATATGGGCCATACTCCTTGGCCAAGTCACAGCTGGCTTCCAAGGCTCCAT 2054760
Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549
||||||||||||| ||||||| |||||| | || || || | || ||||| || |
Sbjct 2054761 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 2054820
Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609
| | | |||||||| || ||||| | ||||| || ||||| || || || | ||| |
Sbjct 2054821 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 2054880
Query 62610 TCTTATTAGA 62619
||||| ||
Sbjct 2054881 GTTTATTCGA 2054890
>seq7661
Length=1898141
Score = 120 bits (132), Expect = 4e-22
Identities = 99/121 (82%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||| ||||| ||||| | ||| |||||||||||||| || ||||| || || || || |
Sbjct 818599 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 818540
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| ||||| ||||| |||||||| || || |||||||| || ||||| ||||| |||||||
Sbjct 818539 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 818480
Query 32803 C 32803
|
Sbjct 818479 C 818479
Score = 111 bits (122), Expect = 2e-19
Identities = 88/106 (83%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980
|||||||| ||| || ||||| | |||||||||||||| ||||| |||||||| |||||
Sbjct 816929 ATCTTTAATATAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 816870
Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026
||||| || || ||||| || ||||||||||||||| ||||||
Sbjct 816869 AATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTCT 816824
>seq608
Length=3558542
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744
|| ||||| || || | || |||||||| |||||||| ||||| || || | || ||
Sbjct 2088600 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 2088541
Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803
||||| ||||| | ||||| ||||| || ||||||||||||||||| || ||||||||
Sbjct 2088540 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 2088482
>seq11415
Length=1221423
Score = 91.5 bits (100), Expect = 2e-13
Identities = 141/200 (71%), Gaps = 1/200 (1%)
Strand=Plus/Minus
Query 30456 ACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCC 30515
||||| | | |||||| ||| |||| ||| | | || ||||| || |||| ||| |||
Sbjct 353737 ACTTCCTCTATTTCTGGGTAAAATATCCGTGCACAAATGAGCTGTGCAATTCGATCACCC 353678
Query 30516 GTATTTACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTA 30575
| || || | || | ||| ||| ||||| || | || || | |||||| |||
Sbjct 353677 TTTTTGACTTCCAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTA 353618
Query 30576 TAATCTTCGTCTATTACACCGCCTCCTATATCAATGCCTTTTAGGGACAGACCAGACCTA 30635
|||||||| ||||| ||||| |||||| ||| ||| | || | || ||||| | |
Sbjct 353617 TAATCTTCATCTATGACACCAGCTCCTACATCTATGAC-GTTGCTGCCAAGCCAGAACGA 353559
Query 30636 GGAGCTATTCTACCATAGCA 30655
||||| | ||| ||||||||
Sbjct 353558 GGAGCCACTCTTCCATAGCA 353539
>seq12849
Length=3269951
Score = 84.2 bits (92), Expect = 3e-11
Identities = 173/254 (68%), Gaps = 5/254 (2%)
Strand=Plus/Minus
Query 30404 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGATATTGTACTTCT 30461
||| || || ||||| ||| ||| | ||| | ||| ||||| | || |||||
Sbjct 3072264 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTC--ATCTAAAATTTAAACTTCC 3072207
Query 30462 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 30521
| | |||||| ||| |||| | || | | || ||||| || ||| ||| ||| | ||
Sbjct 3072206 TCTATTTCTGGGTAAAATATCCATTCACAAATGAGCTGTGCAATTTGATCACCCTTTTTG 3072147
Query 30522 ACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 30581
|| | || | ||| ||| ||||| || | || || | |||||| |||||||||
Sbjct 3072146 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCT 3072087
Query 30582 TCGTCTATTACACCGCCTCCTATATCAATGCCTTTTAGGGACAGACCAGACCTAGGAGCT 30641
|| ||||| |||| |||||| ||| ||| | || | || ||||| | ||||||
Sbjct 3072086 TCATCTATGACACAAGCTCCTACATCTATGAC-GTTGCTGCCAAGCCAGAACGAGGAGCC 3072028
Query 30642 ATTCTACCATAGCA 30655
| ||| ||||||||
Sbjct 3072027 ACTCTTCCATAGCA 3072014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633512726696400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |