Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq899 118 9e-22
seq6889 111 1e-19
seq12661 100 2e-16
>seq899
Length=2520420
Score = 118 bits (130), Expect = 9e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|||||||| || ||||||||||| | || |||||| |||| || | || |||||| |
Sbjct 2265543 ACAATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATTACTCTGGAGGTGGAGCCA 2265484
Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|||||| |||||| | ||| || || || |||||||| || || || |||
Sbjct 2265483 AGTGACACCATCGAGAATGTCAAGGTGAAGATACAAGAAAAAGAAGGCATCCCCCCAGAC 2265424
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||| || | || |||||||| ||||| | ||||||| ||||| || || |||
Sbjct 2265423 CAACAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 2265364
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || ||||| ||||| || || | || || | || ||||| ||
Sbjct 2265363 AACATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 2265314
>seq6889
Length=11136585
Score = 111 bits (122), Expect = 1e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| || || || || ||||||| || ||||||| | || |||||| |
Sbjct 1034464 AATGCAAATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 1034405
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||| |||||| ||||| || ||| || || ||||| ||||| ||||||||
Sbjct 1034404 TGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCA 1034345
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | || ||||||||||| || | ||||||| |||||| | ||||||||
Sbjct 1034344 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 1034285
Query 25178 TATTCAAAAAGAATCCACGCTACA 25201
|| || || || || || || ||
Sbjct 1034284 CATCCAGAAGGAGTCGACCCTGCA 1034261
Score = 105 bits (116), Expect = 6e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||||| || ||||||| | || | ||| | |
Sbjct 1034007 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGGCCATCACCCTGGAGGAAGAGCCCAGT 1033948
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| | |||| ||||| || ||| || || ||||| ||||| ||||||||
Sbjct 1033947 GACACCACCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 1033888
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||||||||| || | ||||||| |||||| | ||||||||
Sbjct 1033887 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1033828
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
||||| ||||| || || || ||
Sbjct 1033827 ATTCAGAAAGAGTCGACCCTGCA 1033805
Score = 105 bits (116), Expect = 6e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||||| || ||||||| | || || ||| | |
Sbjct 1034235 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTAGAGCCCAGT 1034176
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| ||||| || ||| || || ||||| ||||| ||||||||
Sbjct 1034175 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 1034116
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||||||||| || | |||||| |||||| | ||||||||
Sbjct 1034115 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATTGCCGCACTCTTTCTGATTACAAC 1034056
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
|| || ||||| || || || ||
Sbjct 1034055 ATCCAGAAAGAGTCGACCCTGCA 1034033
>seq12661
Length=3984070
Score = 100 bits (110), Expect = 2e-16
Identities = 153/215 (71%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| |||| || || ||||||| | || || ||| | |
Sbjct 2676455 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 2676514
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||||| ||| | || |||| |||| || ||||| || || || |||||||||
Sbjct 2676515 GACACTACTGAG--AATGTCAAAGCCAAAATCCAA-GACAAGGAGGGCATCCCACCTGAC 2676571
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| | | || ||||| |||||||| | || |||| | |||| || || |||
Sbjct 2676572 CAGCAGTGTCTGATCTTTGCGGGCAAACAGCTGGAGGATGGCCTCACTTTGTCAGACTAC 2676631
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || ||||| ||||| || || | |||||
Sbjct 2676632 AATATCCAGAAAGAGTCCACCCTGCACCTGGTGCT 2676666
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433248470635085
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |