Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_008296.2
Length=177300
Score E
Sequences producing significant alignments: (Bits) Value
seq9673 96.9 4e-15
seq8424 87.8 2e-12
seq7041 87.8 2e-12
seq9026 86.0 7e-12
seq551 84.2 2e-11
>seq9673
Length=4878
Score = 96.9 bits (106), Expect = 4e-15
Identities = 58/61 (95%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 162268 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCTGT 162327
||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 492 GTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCACAGGTTCGAATCCTGT 551
Query 162328 C 162328
|
Sbjct 552 C 552
>seq8424
Length=263062
Score = 87.8 bits (96), Expect = 2e-12
Identities = 56/61 (92%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 162268 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCTGT 162327
||||||||||||||||||||| | ||||||||||| | |||||||||||||||||||||
Sbjct 50431 GTAGCTCAGCTGGATAGAGCACCGGCCTTCTAAGCCGATGGTCACAGGTTCGAATCCTGT 50490
Query 162328 C 162328
|
Sbjct 50491 C 50491
>seq7041
Length=191181
Score = 87.8 bits (96), Expect = 2e-12
Identities = 54/58 (93%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 162269 TAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCTG 162326
||||||| ||||||||||||||||||||||||||||| |||| ||||||||| |||||
Sbjct 50773 TAGCTCAACTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCGCAGGTTCGAGTCCTG 50830
>seq9026
Length=54586
Score = 86.0 bits (94), Expect = 7e-12
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 15980 TAGCTCAGCGGTAGAGCTACTCGTTTACACCGAGTCGGTCGGGGGTTCGATCCCCTCTTC 16039
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 51121 TAGCTCAGCGGTAGAGCGTCTCGTTTACACCGAGAGGGTCGGGGGTTCGATCCCCTCACT 51062
Query 16040 GCCCA 16044
|||||
Sbjct 51061 GCCCA 51057
>seq551
Length=68878
Score = 84.2 bits (92), Expect = 2e-11
Identities = 55/61 (90%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 162268 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCTGT 162327
||||||||| ||||||||||| | ||||||||||| | |||||||||||||||||||||
Sbjct 2905 GTAGCTCAGTTGGATAGAGCATCCGCCTTCTAAGCGGATGGTCACAGGTTCGAATCCTGT 2846
Query 162328 C 162328
|
Sbjct 2845 C 2845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 567125225666400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |