Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq9673 96.9 4e-15 seq8424 87.8 2e-12 seq7041 87.8 2e-12 seq9026 86.0 7e-12 seq551 84.2 2e-11 >seq9673 Length=4878 Score = 96.9 bits (106), Expect = 4e-15 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 162268 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCTGT 162327 ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| Sbjct 492 GTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCACAGGTTCGAATCCTGT 551 Query 162328 C 162328 | Sbjct 552 C 552 >seq8424 Length=263062 Score = 87.8 bits (96), Expect = 2e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 162268 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCTGT 162327 ||||||||||||||||||||| | ||||||||||| | ||||||||||||||||||||| Sbjct 50431 GTAGCTCAGCTGGATAGAGCACCGGCCTTCTAAGCCGATGGTCACAGGTTCGAATCCTGT 50490 Query 162328 C 162328 | Sbjct 50491 C 50491 >seq7041 Length=191181 Score = 87.8 bits (96), Expect = 2e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 162269 TAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCTG 162326 ||||||| ||||||||||||||||||||||||||||| |||| ||||||||| ||||| Sbjct 50773 TAGCTCAACTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCGCAGGTTCGAGTCCTG 50830 >seq9026 Length=54586 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 15980 TAGCTCAGCGGTAGAGCTACTCGTTTACACCGAGTCGGTCGGGGGTTCGATCCCCTCTTC 16039 ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| Sbjct 51121 TAGCTCAGCGGTAGAGCGTCTCGTTTACACCGAGAGGGTCGGGGGTTCGATCCCCTCACT 51062 Query 16040 GCCCA 16044 ||||| Sbjct 51061 GCCCA 51057 >seq551 Length=68878 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 162268 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCTGT 162327 ||||||||| ||||||||||| | ||||||||||| | ||||||||||||||||||||| Sbjct 2905 GTAGCTCAGTTGGATAGAGCATCCGCCTTCTAAGCGGATGGTCACAGGTTCGAATCCTGT 2846 Query 162328 C 162328 | Sbjct 2845 C 2845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567125225666400