Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_008464.1 Length=60238 Score E Sequences producing significant alignments: (Bits) Value seq9795 93.3 2e-14 seq8065 91.5 6e-14 >seq9795 Length=220374 Score = 93.3 bits (102), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 45934 AAAGTCCATGCCATCAAACTGCTGGTTTTCATTGATGATACGGGACCAGCCATCAACGCC 45993 ||| ||||||||||| || ||| | | ||| || ||||| || | ||||||||| || || Sbjct 198543 AAACTCCATGCCATCGAATTGCGGATGTTCGTTCATGATGCGTGTCCAGCCATCTACACC 198484 Query 45994 CACCACCGGAACGATGCCGTTCTGCTTATCAGGAAAGGCGTAAATTTCTTTCGTCCACGG 46053 || |||||||| |||||| |||||| ||| |||||||||| ||||| | || Sbjct 198483 AACAACCGGAACAATGCCG---CCCTTATCTGGATAGGCGTAAATCTCTTTAACAAAGGG 198427 Query 46054 ATTAAGACCGTACTGGTTGGCGACGATCAGCA 46085 ||| | || || | ||| || || |||| || Sbjct 198426 ATTTAATCCATATTCGTTTGCAACAATCATCA 198395 >seq8065 Length=27066 Score = 91.5 bits (100), Expect = 6e-14 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 45934 AAAGTCCATGCCATCAAACTGCTGGTTTTCATTGATGATACGGGACCAGCCATCAACGCC 45993 ||| |||| ||||||||| | || | ||| | ||| || |||||||||||||| || Sbjct 26813 AAATTCCAAGCCATCAAAATTAGGGCTACTATTTACGATGCGCGACCAGCCATCAACACC 26754 Query 45994 CACCACCGGAACGATGCCGTTCTGCTTATCAGGAAAGGCGTAAATTTCTTTCGTCCACGG 46053 || || || | || || || | |||||||| || || || |||||||| |||||||| Sbjct 26753 AACAACAGGGATTATCCCTTTATTTTTATCAGGGAAAGCATATATTTCTTTGGTCCACGG 26694 Query 46054 ATTAAGACCGTACTGGTTGGCGACGATCAGCAA 46086 |||||| || ||| || ||||||| ||| Sbjct 26693 ATTAAGCTTATATTGGCCTGCAACGATCAACAA 26661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192605551031600