Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq8995 289 3e-73 seq7661 91.5 2e-13 >seq8995 Length=8301158 Score = 289 bits (320), Expect = 3e-73 Identities = 536/777 (69%), Gaps = 7/777 (1%) Strand=Plus/Plus Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||| |||||| || || || || |||||||| ||||||| |||||||| || | Sbjct 6971491 ATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATG 6971550 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || ||||| || || || || | ||| || | || || ||| || | | Sbjct 6971551 AGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTGACGATT 6971610 Query 93038 ATTTCTATTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096 ||||| ||||||| || ||| | ||||| || | | | ||| |||| | ||| | Sbjct 6971611 ATTTCCTTTACTCT-CTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAACATCAGGCAGGT 6971669 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTG 93155 |||||| || ||||| || |||| || || || | ||||| || || | || | Sbjct 6971670 AAAGTCACAGTGCAAACCCTCATCTC-TGCTAATAAGTTCATTGGAAAACGTGAGGCCAG 6971728 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | ||||||||||||||||||||| ||||| || |||||| ||| ||||| || || | Sbjct 6971729 GCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGC 6971788 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275 ||||||| || ||||| || || | |||||| || | | || || | ||| Sbjct 6971789 CTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAGTCC 6971848 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 | || |||||||| || || ||||| | |||||| | || || || || || || | Sbjct 6971849 AGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGA 6971908 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 | | || | || | |||||| ||||| || || || | ||| ||||||||||| Sbjct 6971909 GAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAG 6971968 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 |||| | || ||||| ||||||||||| || |||||||| ||| || || ||||| | Sbjct 6971969 AATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAA 6972028 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 ||||||| ||| | ||| || | |||||||| ||||| ||||| ||||||||| | Sbjct 6972029 CTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGA 6972088 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGAT 93574 |||||| | ||| ||||||| | |||| ||| || || ||||| | | || Sbjct 6972089 AAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGA- 6972147 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634 | || || ||||| || || || || | |||||||| || || || ||||| || ||| Sbjct 6972148 ATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATAC 6972207 Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCT 93691 || | ||| || || || |||| || ||||| |||||||| || ||||| ||| Sbjct 6972208 ATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAAGCGGCGTGGGTTTTCT 6972264 Score = 123 bits (136), Expect = 3e-23 Identities = 230/331 (69%), Gaps = 5/331 (2%) Strand=Plus/Plus Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||| |||||| || || || || |||||||| ||||||| |||||||| || | Sbjct 6968623 ATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATG 6968682 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || ||||| || || || || | ||| || | || || ||| || | | Sbjct 6968683 AGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTGACGATT 6968742 Query 93038 ATTTCTATTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096 ||||| ||||||| || ||| | ||||| || | | | ||| |||| | ||| | Sbjct 6968743 ATTTCCTTTACTCT-CTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAACATCAGGCAGGT 6968801 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTG 93155 |||||| || ||||| || |||| || || || | ||||| || || | || | Sbjct 6968802 AAAGTCACAGTGCAAACCCTCATCTC-TGCTAATAAGTTCATTGGAAAACGTGAGGCCAG 6968860 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | ||||||||||||||||||||| ||||| || |||||| ||| ||||| || || | Sbjct 6968861 GCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGC 6968920 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||||||| || ||||| || || | |||||| Sbjct 6968921 CTTCCACTGCAGCAAAGGCTACCACACGTTC 6968951 >seq7661 Length=1898141 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| || || | || || | ||||||||||||||||||||| ||||| || ||| Sbjct 818579 TCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCA 818520 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||| ||||| || || |||||||| || ||||| || || | |||||| Sbjct 818519 AAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTC 818467 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| || || || || || | ||| ||||||||||||||| | || ||||| Sbjct 816931 GAATCTTTAATATAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATG 816872 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||||||||||| || |||||||| ||| || || ||||| |||||||| Sbjct 816871 GCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTCTTG 816822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556755977915160