Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 289 3e-73
seq7661 91.5 2e-13
>seq8995
Length=8301158
Score = 289 bits (320), Expect = 3e-73
Identities = 536/777 (69%), Gaps = 7/777 (1%)
Strand=Plus/Plus
Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977
|||| |||||| || || || || |||||||| ||||||| |||||||| || |
Sbjct 6971491 ATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATG 6971550
Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037
|| ||||| || || || || | ||| || | || || ||| || | |
Sbjct 6971551 AGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTGACGATT 6971610
Query 93038 ATTTCTATTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096
||||| ||||||| || ||| | ||||| || | | | ||| |||| | ||| |
Sbjct 6971611 ATTTCCTTTACTCT-CTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAACATCAGGCAGGT 6971669
Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTG 93155
|||||| || ||||| || |||| || || || | ||||| || || | || |
Sbjct 6971670 AAAGTCACAGTGCAAACCCTCATCTC-TGCTAATAAGTTCATTGGAAAACGTGAGGCCAG 6971728
Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215
| | ||||||||||||||||||||| ||||| || |||||| ||| ||||| || || |
Sbjct 6971729 GCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGC 6971788
Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275
||||||| || ||||| || || | |||||| || | | || || | |||
Sbjct 6971789 CTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAGTCC 6971848
Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335
| || |||||||| || || ||||| | |||||| | || || || || || || |
Sbjct 6971849 AGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGA 6971908
Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395
| | || | || | |||||| ||||| || || || | ||| |||||||||||
Sbjct 6971909 GAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAG 6971968
Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455
|||| | || ||||| ||||||||||| || |||||||| ||| || || ||||| |
Sbjct 6971969 AATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAA 6972028
Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515
||||||| ||| | ||| || | |||||||| ||||| ||||| ||||||||| |
Sbjct 6972029 CTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGA 6972088
Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGAT 93574
|||||| | ||| ||||||| | |||| ||| || || ||||| | | ||
Sbjct 6972089 AAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGA- 6972147
Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634
| || || ||||| || || || || | |||||||| || || || ||||| || |||
Sbjct 6972148 ATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATAC 6972207
Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCT 93691
|| | ||| || || || |||| || ||||| |||||||| || ||||| |||
Sbjct 6972208 ATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAAGCGGCGTGGGTTTTCT 6972264
Score = 123 bits (136), Expect = 3e-23
Identities = 230/331 (69%), Gaps = 5/331 (2%)
Strand=Plus/Plus
Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977
|||| |||||| || || || || |||||||| ||||||| |||||||| || |
Sbjct 6968623 ATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATG 6968682
Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037
|| ||||| || || || || | ||| || | || || ||| || | |
Sbjct 6968683 AGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTGACGATT 6968742
Query 93038 ATTTCTATTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096
||||| ||||||| || ||| | ||||| || | | | ||| |||| | ||| |
Sbjct 6968743 ATTTCCTTTACTCT-CTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAACATCAGGCAGGT 6968801
Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTG 93155
|||||| || ||||| || |||| || || || | ||||| || || | || |
Sbjct 6968802 AAAGTCACAGTGCAAACCCTCATCTC-TGCTAATAAGTTCATTGGAAAACGTGAGGCCAG 6968860
Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215
| | ||||||||||||||||||||| ||||| || |||||| ||| ||||| || || |
Sbjct 6968861 GCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGC 6968920
Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTC 93246
||||||| || ||||| || || | ||||||
Sbjct 6968921 CTTCCACTGCAGCAAAGGCTACCACACGTTC 6968951
>seq7661
Length=1898141
Score = 91.5 bits (100), Expect = 2e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193
|||||| || || | || || | ||||||||||||||||||||| ||||| || |||
Sbjct 818579 TCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCA 818520
Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246
||| ||| ||||| || || |||||||| || ||||| || || | ||||||
Sbjct 818519 AAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTC 818467
Score = 82.4 bits (90), Expect = 8e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412
|||||| || || || || || | ||| ||||||||||||||| | || |||||
Sbjct 816931 GAATCTTTAATATAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATG 816872
Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462
||||||||||| || |||||||| ||| || || ||||| ||||||||
Sbjct 816871 GCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTCTTG 816822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556755977915160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |