Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq12661 113 4e-20
seq9853 109 5e-19
seq6889 98.7 8e-16
seq8560 93.3 4e-14
seq3764 82.4 6e-11
>seq12661
Length=3984070
Score = 113 bits (124), Expect = 4e-20
Identities = 145/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
||||||| || ||||| || || | || || || || |||| ||||| || || |||
Sbjct 2676453 AGATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCA 2676512
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
|| || || || ||||| ||||| |||||||||||||| || ||||| || |
Sbjct 2676513 GTGACACTACTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACC 2676572
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || |||| || ||||| ||||||||| | |||||| || ||| | || || ||||
Sbjct 2676573 AGCAGTGTCTGATCTTTGCGGGCAAACAGCTGGAGGATGGCCTCACTTTGTCAGACTACA 2676632
Query 22397 ACATTCAAAAAGAATCCACC 22416
| || || ||||| ||||||
Sbjct 2676633 ATATCCAGAAAGAGTCCACC 2676652
>seq9853
Length=4041771
Score = 109 bits (120), Expect = 5e-19
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
||||||| || ||||| || || | | || || || |||||||||| || || |||
Sbjct 360011 AGATGCAGATCTTTGTGAAGACGCTGATGGGCAAGACCATCACTCTTGAGGTCGAGCCCA 359952
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
|| ||| | || | ||||| ||||| |||||| ||||||| || ||||| || |
Sbjct 359951 GTGACACCATTGAAAGTGTCAAAGCCAAAATCCAAGACGAGGAGGGCATCCCACCAGACC 359892
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || ||||| || || ||||||||||| | ||||| |||||| | || || ||||
Sbjct 359891 AGCAGCGTCTGATCTTCTCCGGCAAACAGCTGCAGGATGGCCGCACTCTGTCAGACTACA 359832
Query 22397 ACATTCAAAAAGAATCCACC 22416
| || || ||||| | ||||
Sbjct 359831 ATATCCAGAAAGAGTTCACC 359812
>seq6889
Length=11136585
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272
|| || |||||||| || || ||||| | ||||| || || |||| || || |||||
Sbjct 1034469 GTCAAAATGCAAATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 1034410
Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332
||| || ||| | || || | || || || || || ||||| || ||||| ||
Sbjct 1034409 CCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCT 1034350
Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392
|| || || | || || ||||||||||| ||| | || ||| |||||| | || |||
Sbjct 1034349 GACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 1034290
Query 22393 TACAACATTCAAAAAGAATCCACC 22416
|||||||| || || || || |||
Sbjct 1034289 TACAACATCCAGAAGGAGTCGACC 1034266
Score = 82.4 bits (90), Expect = 6e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | ||||| || || |||| || || || || |||
Sbjct 1034235 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTAGAGCCCAGT 1034176
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | | || || || || || ||||| || ||||| || || ||
Sbjct 1034175 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 1034116
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | || || ||||||||||| ||| | || ||| |||||| | || |||||||||
Sbjct 1034115 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATTGCCGCACTCTTTCTGATTACAAC 1034056
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || ||||| || |||
Sbjct 1034055 ATCCAGAAAGAGTCGACC 1034038
>seq8560
Length=3069389
Score = 93.3 bits (102), Expect = 4e-14
Identities = 154/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACT-TTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274
|||||||| |||||||| || ||| || || || || || ||||||| | || || |
Sbjct 2390072 AAGATGCAGATTTTTGTGAAGACTCTTGACAGGGAAGACCATCACTCTCAAGGTCGAGCC 2390131
Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334
| | ||||| | || ||| | | || || || || ||||| || ||||| || ||
Sbjct 2390132 CTCTGATACAATAGAAGATGTAATGGTCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 2390191
Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394
|| ||| | || || ||||| || || || | || ||| || || | || || ||
Sbjct 2390192 -CAGCAAAGACTGATCTTTGCTGGAAAGCAAGTGGAAGATGGACGTACTTTGTCTGACTA 2390250
Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434
|||||||||||| || ||||| | |||||||| ||| ||
Sbjct 2390251 CAACATTCAAAAGGAGTCCACTCTTCATTTAGTGTTGAGA 2390290
>seq3764
Length=1885950
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||| ||| ||||| || || || | | || || || |||||||||| || || ||
Sbjct 1780089 AAGAAGCAGATTTTCGTGAAGACCCTGAGGGGGAAGACCATCACTCTTGAGGTCGAGCCC 1780148
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| ||||| | | || | || || || || || ||||| || ||||| || ||
Sbjct 1780149 TCGGATACAATAGGAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 1780208
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| ||| | || || |||| ||||| || | || ||| || || | || || |||
Sbjct 1780209 CAGCAAAGACTGATCTTTGTTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 1780268
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
||||||||||| || ||||| | ||| |||| ||| || | || || ||
Sbjct 1780269 AACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCGTGGTGG 1780318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419650966664335
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |