Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq12661 113 4e-20 seq9853 109 5e-19 seq6889 98.7 8e-16 seq8560 93.3 4e-14 seq3764 82.4 6e-11 >seq12661 Length=3984070 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||| ||||| || || ||| Sbjct 2676453 AGATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCA 2676512 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || || || || ||||| ||||| |||||||||||||| || ||||| || | Sbjct 2676513 GTGACACTACTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACC 2676572 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || |||| || ||||| ||||||||| | |||||| || ||| | || || |||| Sbjct 2676573 AGCAGTGTCTGATCTTTGCGGGCAAACAGCTGGAGGATGGCCTCACTTTGTCAGACTACA 2676632 Query 22397 ACATTCAAAAAGAATCCACC 22416 | || || ||||| |||||| Sbjct 2676633 ATATCCAGAAAGAGTCCACC 2676652 >seq9853 Length=4041771 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | | || || || |||||||||| || || ||| Sbjct 360011 AGATGCAGATCTTTGTGAAGACGCTGATGGGCAAGACCATCACTCTTGAGGTCGAGCCCA 359952 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || | ||||| ||||| |||||| ||||||| || ||||| || | Sbjct 359951 GTGACACCATTGAAAGTGTCAAAGCCAAAATCCAAGACGAGGAGGGCATCCCACCAGACC 359892 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| || || ||||||||||| | ||||| |||||| | || || |||| Sbjct 359891 AGCAGCGTCTGATCTTCTCCGGCAAACAGCTGCAGGATGGCCGCACTCTGTCAGACTACA 359832 Query 22397 ACATTCAAAAAGAATCCACC 22416 | || || ||||| | |||| Sbjct 359831 ATATCCAGAAAGAGTTCACC 359812 >seq6889 Length=11136585 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || |||||||| || || ||||| | ||||| || || |||| || || ||||| Sbjct 1034469 GTCAAAATGCAAATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 1034410 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || || | || || || || || ||||| || ||||| || Sbjct 1034409 CCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCT 1034350 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||||||||| ||| | || ||| |||||| | || ||| Sbjct 1034349 GACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 1034290 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 |||||||| || || || || ||| Sbjct 1034289 TACAACATCCAGAAGGAGTCGACC 1034266 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || ||| Sbjct 1034235 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTAGAGCCCAGT 1034176 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || || ||||| || ||||| || || || Sbjct 1034175 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 1034116 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || ||| |||||| | || ||||||||| Sbjct 1034115 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATTGCCGCACTCTTTCTGATTACAAC 1034056 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 1034055 ATCCAGAAAGAGTCGACC 1034038 >seq8560 Length=3069389 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACT-TTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 |||||||| |||||||| || ||| || || || || || ||||||| | || || | Sbjct 2390072 AAGATGCAGATTTTTGTGAAGACTCTTGACAGGGAAGACCATCACTCTCAAGGTCGAGCC 2390131 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | | ||||| | || ||| | | || || || || ||||| || ||||| || || Sbjct 2390132 CTCTGATACAATAGAAGATGTAATGGTCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 2390191 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || ||| | || || ||||| || || || | || ||| || || | || || || Sbjct 2390192 -CAGCAAAGACTGATCTTTGCTGGAAAGCAAGTGGAAGATGGACGTACTTTGTCTGACTA 2390250 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 |||||||||||| || ||||| | |||||||| ||| || Sbjct 2390251 CAACATTCAAAAGGAGTCCACTCTTCATTTAGTGTTGAGA 2390290 >seq3764 Length=1885950 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||| ||| ||||| || || || | | || || || |||||||||| || || || Sbjct 1780089 AAGAAGCAGATTTTCGTGAAGACCCTGAGGGGGAAGACCATCACTCTTGAGGTCGAGCCC 1780148 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | | || | || || || || || ||||| || ||||| || || Sbjct 1780149 TCGGATACAATAGGAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 1780208 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||| | || || |||| ||||| || | || ||| || || | || || ||| Sbjct 1780209 CAGCAAAGACTGATCTTTGTTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 1780268 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||| || ||||| | ||| |||| ||| || | || || || Sbjct 1780269 AACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCGTGGTGG 1780318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419650966664335