Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2547 95.1 2e-14 seq10801 93.3 9e-14 seq14291 91.5 3e-13 seq12132 91.5 3e-13 seq5118 91.5 3e-13 seq13197 89.7 1e-12 seq10062 89.7 1e-12 seq3099 89.7 1e-12 seq11622 87.8 4e-12 seq12797 86.0 1e-11 >seq2547 Length=2178121 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 1430627 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 1430568 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 1430567 TCCCGGCAGAGA 1430556 >seq10801 Length=2328062 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 1431334 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 1431393 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 1431394 GCCCCACGTTGGGC 1431407 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1444283 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1444224 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1444223 CCCACGTTGGGC 1444212 >seq14291 Length=748 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 19710 GCACTCTTCCTTGGTCGCGGGCTCCATGCACCGGTTGCCTACGAAGGCGCCCTCAAGCTC 19769 || |||||||| || || ||||| ||| ||| | || ||||| || ||||||||| Sbjct 733 GCGCTCTTCCTGGGCCGTGGGCTGCATTACCCGATCGCACTGGAAGGTGCGCTCAAGCTC 674 Query 19770 AAGGAGATCAGTTACATCCACGCAGAGGGTATTTCGGCAGGCGAACTTAAGCACGGGCCT 19829 |||||||||| ||||||||||| |||| | | | || || ||||| |||||||| || Sbjct 673 AAGGAGATCACCTACATCCACGCTGAGGCTTATGCCGCCGGTGAACTGAAGCACGGTCCG 614 Query 19830 CTTGCTCT 19837 || || || Sbjct 613 CTGGCGCT 606 >seq12132 Length=12122 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 19710 GCACTCTTCCTTGGTCGCGGGCTCCATGCACCGGTTGCCTACGAAGGCGCCCTCAAGCTC 19769 || |||||||| || || || |||| ||| |||| |||||||| ||||||||| Sbjct 8559 GCGCTCTTCCTGGGCCGTGGCATCCACTACCCGATTGCGCTGGAAGGCGCGCTCAAGCTC 8500 Query 19770 AAGGAGATCAGTTACATCCACGCAGAGGGTATTTCGGCAGGCGAACTTAAGCACGGGCCT 19829 ||||| ||||| ||||||||||| |||| | |||| ||||| || |||||||| || Sbjct 8499 AAGGAAATCAGCTACATCCACGCCGAGGCCTATCCGGCCGGCGAGCTCAAGCACGGCCCG 8440 Query 19830 CTTGCTCT 19837 || || || Sbjct 8439 CTGGCCCT 8432 >seq5118 Length=1510704 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 710958 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 711017 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 711018 CCCCACGTTGGGC 711030 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 675168 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 675109 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 675108 CCCACGTTGGGC 675097 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 681490 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 681431 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 681430 CCCACGTTGGGC 681419 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 685415 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 685356 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 685355 CCCACGTTGGGC 685344 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 689803 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 689744 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 689743 CCCACGTTGGGC 689732 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/71 (89%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 142498 GAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGT 142557 ||||| |||||| |||||||||||||||||| ||||||||||||| |||||||||| Sbjct 694178 GAGAT-GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGT 694120 Query 142558 TCGAGCCCCAC 142568 ||||||||||| Sbjct 694119 TCGAGCCCCAC 694109 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 706250 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 706309 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 706310 CCCACGTTGGGC 706321 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 683681 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 683622 Query 142564 CCCACATCGGGC 142575 || || | |||| Sbjct 683621 CCTACGTTGGGC 683610 >seq13197 Length=1288831 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 257877 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 257818 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 257817 CCCACGTTGGGC 257806 >seq10062 Length=3830263 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||| || ||||||||||||||||| || ||||||||||||| |||||||||||| | Sbjct 1065267 TAGCCTGGCTAGCTCAGTCGGTAGAGTGCGAGACTCTTAATCTCAGGGTCGTGGGTTCAA 1065326 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 1065327 GCCCCACGTTGGGC 1065340 >seq3099 Length=1055975 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1002022 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1002081 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1002082 CCCACGTTGGGC 1002093 >seq11622 Length=276999 Score = 87.8 bits (96), Expect = 4e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 142509 GTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 ||||||||||| |||||||| ||||||||||||||| ||||||||||||||| |||||| Sbjct 174232 GTTAGCTCAGTTGGTAGAGCAGTAGACTCTTAATCTATTGGTCGTGGGTTCGAACCCCAC 174173 Query 142569 A 142569 | Sbjct 174172 A 174172 >seq12797 Length=1990670 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1050120 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1050061 Query 142564 CCCACATCGGGC 142575 |||| | |||| Sbjct 1050060 CCCAAGTTGGGC 1050049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027638485634619