Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq2547 95.1 2e-14
seq10801 93.3 9e-14
seq14291 91.5 3e-13
seq12132 91.5 3e-13
seq5118 91.5 3e-13
seq13197 89.7 1e-12
seq10062 89.7 1e-12
seq3099 89.7 1e-12
seq11622 87.8 4e-12
seq12797 86.0 1e-11
>seq2547
Length=2178121
Score = 95.1 bits (104), Expect = 2e-14
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111
|||||||||||||||||||| |||||| ||||||||||||||| ||||| |||||||||
Sbjct 1430627 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 1430568
Query 142112 CCCCGCCAGAGA 142123
|||| ||||||
Sbjct 1430567 TCCCGGCAGAGA 1430556
>seq10801
Length=2328062
Score = 93.3 bits (102), Expect = 9e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
|||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1431334 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 1431393
Query 142562 GCCCCACATCGGGC 142575
||||||| | ||||
Sbjct 1431394 GCCCCACGTTGGGC 1431407
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1444283 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1444224
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 1444223 CCCACGTTGGGC 1444212
>seq14291
Length=748
Score = 91.5 bits (100), Expect = 3e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 19710 GCACTCTTCCTTGGTCGCGGGCTCCATGCACCGGTTGCCTACGAAGGCGCCCTCAAGCTC 19769
|| |||||||| || || ||||| ||| ||| | || ||||| || |||||||||
Sbjct 733 GCGCTCTTCCTGGGCCGTGGGCTGCATTACCCGATCGCACTGGAAGGTGCGCTCAAGCTC 674
Query 19770 AAGGAGATCAGTTACATCCACGCAGAGGGTATTTCGGCAGGCGAACTTAAGCACGGGCCT 19829
|||||||||| ||||||||||| |||| | | | || || ||||| |||||||| ||
Sbjct 673 AAGGAGATCACCTACATCCACGCTGAGGCTTATGCCGCCGGTGAACTGAAGCACGGTCCG 614
Query 19830 CTTGCTCT 19837
|| || ||
Sbjct 613 CTGGCGCT 606
>seq12132
Length=12122
Score = 91.5 bits (100), Expect = 3e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 19710 GCACTCTTCCTTGGTCGCGGGCTCCATGCACCGGTTGCCTACGAAGGCGCCCTCAAGCTC 19769
|| |||||||| || || || |||| ||| |||| |||||||| |||||||||
Sbjct 8559 GCGCTCTTCCTGGGCCGTGGCATCCACTACCCGATTGCGCTGGAAGGCGCGCTCAAGCTC 8500
Query 19770 AAGGAGATCAGTTACATCCACGCAGAGGGTATTTCGGCAGGCGAACTTAAGCACGGGCCT 19829
||||| ||||| ||||||||||| |||| | |||| ||||| || |||||||| ||
Sbjct 8499 AAGGAAATCAGCTACATCCACGCCGAGGCCTATCCGGCCGGCGAGCTCAAGCACGGCCCG 8440
Query 19830 CTTGCTCT 19837
|| || ||
Sbjct 8439 CTGGCCCT 8432
>seq5118
Length=1510704
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 710958 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 711017
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 711018 CCCCACGTTGGGC 711030
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 675168 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 675109
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 675108 CCCACGTTGGGC 675097
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 681490 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 681431
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 681430 CCCACGTTGGGC 681419
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 685415 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 685356
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 685355 CCCACGTTGGGC 685344
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 689803 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 689744
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 689743 CCCACGTTGGGC 689732
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/71 (89%), Gaps = 1/71 (1%)
Strand=Plus/Minus
Query 142498 GAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGT 142557
||||| |||||| |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 694178 GAGAT-GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGT 694120
Query 142558 TCGAGCCCCAC 142568
|||||||||||
Sbjct 694119 TCGAGCCCCAC 694109
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 706250 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 706309
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 706310 CCCACGTTGGGC 706321
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 683681 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 683622
Query 142564 CCCACATCGGGC 142575
|| || | ||||
Sbjct 683621 CCTACGTTGGGC 683610
>seq13197
Length=1288831
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 257877 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 257818
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 257817 CCCACGTTGGGC 257806
>seq10062
Length=3830263
Score = 89.7 bits (98), Expect = 1e-12
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
||||| || ||||||||||||||||| || ||||||||||||| |||||||||||| |
Sbjct 1065267 TAGCCTGGCTAGCTCAGTCGGTAGAGTGCGAGACTCTTAATCTCAGGGTCGTGGGTTCAA 1065326
Query 142562 GCCCCACATCGGGC 142575
||||||| | ||||
Sbjct 1065327 GCCCCACGTTGGGC 1065340
>seq3099
Length=1055975
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1002022 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1002081
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 1002082 CCCACGTTGGGC 1002093
>seq11622
Length=276999
Score = 87.8 bits (96), Expect = 4e-12
Identities = 56/61 (92%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 142509 GTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568
||||||||||| |||||||| ||||||||||||||| ||||||||||||||| ||||||
Sbjct 174232 GTTAGCTCAGTTGGTAGAGCAGTAGACTCTTAATCTATTGGTCGTGGGTTCGAACCCCAC 174173
Query 142569 A 142569
|
Sbjct 174172 A 174172
>seq12797
Length=1990670
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1050120 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1050061
Query 142564 CCCACATCGGGC 142575
|||| | ||||
Sbjct 1050060 CCCAAGTTGGGC 1050049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027638485634619
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |