Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq8995 188 1e-42 seq608 84.2 4e-11 >seq8995 Length=8301158 Score = 188 bits (208), Expect = 1e-42 Identities = 561/854 (66%), Gaps = 25/854 (3%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||||| |||| || || ||| ||||| ||||| || || ||| ||||| || Sbjct 6972233 ATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCT 6972174 Query 42345 GAGGAGATTGACCTGGCCAAGGACA--CGGCCGGCTGGGAGTCACTGT---CTGAGAACG 42399 |||||| | ||||| ||||||||| | || |||||| | ||| ||||| | | Sbjct 6972173 GAGGAGGTGGACCTTTCCAAGGACATTCAGCA--CTGGGAAGCCCTGAAGCCTGAGGA-G 6972117 Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 | | |||| || | | ||||| ||||| || || ||| |||||||| |||| Sbjct 6972116 AGATATTTTATTTCCCATG--TGCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATG 6972059 Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTA 42517 | ||| ||| |||| | |||| || ||| ||| ||||| | || ||||| Sbjct 6972058 AAAACTTGGTGGAGCGGTTTAGCCAAGAAGTTCAGATTACC--GAGGCTCCTTGTTTCTA 6972001 Query 42518 CGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---A 42574 |||||||| || ||||| || ||| | || ||||| |||| | || |||| | Sbjct 6972000 TGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTCATTGA 6971944 Query 42575 CACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634 ||| ||||| ||| || || | | || ||||| ||||| ||||||||||| Sbjct 6971943 CACTTACATTAAAGATTCCAAAGAAAGGGAATTTCTCTTCAATGCCATTGAGACGATGCC 6971884 Query 42635 CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTT 42694 || | ||||||||||| || ||||| | ||||| | | || || || | Sbjct 6971883 TTGTGTGAAGAAGAAGGCAGATTGGGCCTTGCGCTGGACTGGGGACAAAGAAGCTACATA 6971824 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGC 42754 || || | ||||||||||| | || || || ||||||||||| || || | || || Sbjct 6971823 TGGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGC 6971764 Query 42755 CTCCATCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813 || || |||||||||||| | ||| | |||||| || ||||| || || || |||| Sbjct 6971763 GTCTATATTCTGGCTCAAGAAACGAGGACT-GATGCCTGGCCTCACGTTTTCCAATGAAC 6971705 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACC 42873 | || ||||| || ||||| |||| | |||||| ||||||| ||||| | |||| Sbjct 6971704 TTATTAGCAGAGATGAGGGTTTGCACTGTGACTTTACCTGCCTGATGTTC---AAACACC 6971648 Query 42874 TCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCG 42933 | |||||| || ||||| || | || || || ||| | || || ||| | Sbjct 6971647 TGTTGCACAAACCTTCGAAACAGAGAGTAAAGGAAATAATCGTCAATGCAGTTAGGATAG 6971588 Query 42934 AGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCA 42993 | |||||||||| ||| || | ||||| ||| || | || ||||| | | | Sbjct 6971587 AACAGGAGTTCCTTACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATTGCACTTTGA 6971528 Query 42994 TGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCC 43053 || |||||||| ||| ||| || || || || || |||| | ||| Sbjct 6971527 TGAAGCAGTACATCGAGTTCGTGGCAGATAGACTTATGCTGGAGCTGGGCTTTAGCAAGG 6971468 Query 43054 TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCA 43113 | | ||| || || ||||||||||| || || || ||||||| ||||| | Sbjct 6971467 TTTTCAAAGTAGAAAATCCGTTTGACTTTATGGAAAATATTTCACTGGAGGGGAAGACTA 6971408 Query 43114 ACTTTTTCGAGAAG 43127 |||| || |||||| Sbjct 6971407 ACTTCTTTGAGAAG 6971394 Score = 154 bits (170), Expect = 3e-32 Identities = 359/538 (67%), Gaps = 5/538 (1%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| ||||| ||||||||||| || | ||||||||||| || ||||| | | Sbjct 6969041 CTCTTCAATGCCATTGAGACGATGCCTTGTGTGAAGAAGAAGGCAGATTGGGCCTTGCGC 6968982 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 |||| | | || || || | || || | ||||||||||| | || || || Sbjct 6968981 TGGACTGGGGACAAAGAAGCTACATATGGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAA 6968922 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAAGGTGTCGAT 42787 ||||||||||| || || | || || || || |||||||||||| | ||| | ||| Sbjct 6968921 GGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCTGGCTCAAGAAACGAGGACT-GAT 6968863 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTT 42847 ||| || ||||| || || || ||||| || ||||| || ||||| |||| | ||||| Sbjct 6968862 GCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGATGAGGGTTTGCACTGTGACTT 6968803 Query 42848 TGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGC 42907 | ||||||| ||||| | ||||| |||||| || ||||| || | || || Sbjct 6968802 TACCTGCCTGATGTTC---AAACACCTGTTGCACAAACCTTCGAAACAGAGAGTAAAGGA 6968746 Query 42908 CATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTC 42967 || ||| | || || ||| || |||||||||| ||| || | ||||| ||| Sbjct 6968745 AATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCTTACGGAGGCCCTGCCTGTGAA 6968686 Query 42968 CCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCT 43027 || | || ||||| | | ||| |||||||| ||| ||| || || || Sbjct 6968685 GCTCATTGGGATGAATTGCACTTTGATGAAGCAGTACATCGAGTTCGTGGCAGATAGACT 6968626 Query 43028 CCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGA 43087 || || |||| | ||| | | ||| || || ||||||||||| Sbjct 6968625 TATGCTGGAGCTGGGCTTTAGCAAGGTTTTCAAAGTAGAAAATCCGTTTGACTTTATGGA 6968566 Query 43088 GAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 || || || ||||||| ||||| ||||| || |||||| | || | ||| || ||| Sbjct 6968565 AAATATTTCACTGGAGGGGAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCAG 6968508 >seq608 Length=3558542 Score = 84.2 bits (92), Expect = 4e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || || ||| |||| |||||| | || || || || || ||||||||||| | || || Sbjct 2088467 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 2088526 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || |||||||| ||| | | ||| || ||||| |||||||| || || || || || Sbjct 2088527 GCTATATTCTGGCTAAAGAAAAGAGGACTC-ATGCCTGGACTCACTTTTTCCAATGAGCT 2088585 Query 42815 CATCAGCAGGGACGA 42829 ||||||||| || || Sbjct 2088586 CATCAGCAGAGATGA 2088600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944161439949840