Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 188 1e-42
seq608 84.2 4e-11
>seq8995
Length=8301158
Score = 188 bits (208), Expect = 1e-42
Identities = 561/854 (66%), Gaps = 25/854 (3%)
Strand=Plus/Minus
Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344
||||| |||| || || ||| ||||| ||||| || || ||| ||||| ||
Sbjct 6972233 ATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCT 6972174
Query 42345 GAGGAGATTGACCTGGCCAAGGACA--CGGCCGGCTGGGAGTCACTGT---CTGAGAACG 42399
|||||| | ||||| ||||||||| | || |||||| | ||| ||||| | |
Sbjct 6972173 GAGGAGGTGGACCTTTCCAAGGACATTCAGCA--CTGGGAAGCCCTGAAGCCTGAGGA-G 6972117
Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459
| | |||| || | | ||||| ||||| || || ||| |||||||| ||||
Sbjct 6972116 AGATATTTTATTTCCCATG--TGCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATG 6972059
Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTA 42517
| ||| ||| |||| | |||| || ||| ||| ||||| | || |||||
Sbjct 6972058 AAAACTTGGTGGAGCGGTTTAGCCAAGAAGTTCAGATTACC--GAGGCTCCTTGTTTCTA 6972001
Query 42518 CGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---A 42574
|||||||| || ||||| || ||| | || ||||| |||| | || |||| |
Sbjct 6972000 TGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTCATTGA 6971944
Query 42575 CACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634
||| ||||| ||| || || | | || ||||| ||||| |||||||||||
Sbjct 6971943 CACTTACATTAAAGATTCCAAAGAAAGGGAATTTCTCTTCAATGCCATTGAGACGATGCC 6971884
Query 42635 CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTT 42694
|| | ||||||||||| || ||||| | ||||| | | || || || |
Sbjct 6971883 TTGTGTGAAGAAGAAGGCAGATTGGGCCTTGCGCTGGACTGGGGACAAAGAAGCTACATA 6971824
Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGC 42754
|| || | ||||||||||| | || || || ||||||||||| || || | || ||
Sbjct 6971823 TGGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGC 6971764
Query 42755 CTCCATCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813
|| || |||||||||||| | ||| | |||||| || ||||| || || || ||||
Sbjct 6971763 GTCTATATTCTGGCTCAAGAAACGAGGACT-GATGCCTGGCCTCACGTTTTCCAATGAAC 6971705
Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACC 42873
| || ||||| || ||||| |||| | |||||| ||||||| ||||| | ||||
Sbjct 6971704 TTATTAGCAGAGATGAGGGTTTGCACTGTGACTTTACCTGCCTGATGTTC---AAACACC 6971648
Query 42874 TCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCG 42933
| |||||| || ||||| || | || || || ||| | || || ||| |
Sbjct 6971647 TGTTGCACAAACCTTCGAAACAGAGAGTAAAGGAAATAATCGTCAATGCAGTTAGGATAG 6971588
Query 42934 AGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCA 42993
| |||||||||| ||| || | ||||| ||| || | || ||||| | | |
Sbjct 6971587 AACAGGAGTTCCTTACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATTGCACTTTGA 6971528
Query 42994 TGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCC 43053
|| |||||||| ||| ||| || || || || || |||| | |||
Sbjct 6971527 TGAAGCAGTACATCGAGTTCGTGGCAGATAGACTTATGCTGGAGCTGGGCTTTAGCAAGG 6971468
Query 43054 TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCA 43113
| | ||| || || ||||||||||| || || || ||||||| ||||| |
Sbjct 6971467 TTTTCAAAGTAGAAAATCCGTTTGACTTTATGGAAAATATTTCACTGGAGGGGAAGACTA 6971408
Query 43114 ACTTTTTCGAGAAG 43127
|||| || ||||||
Sbjct 6971407 ACTTCTTTGAGAAG 6971394
Score = 154 bits (170), Expect = 3e-32
Identities = 359/538 (67%), Gaps = 5/538 (1%)
Strand=Plus/Minus
Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668
|| ||||| ||||| ||||||||||| || | ||||||||||| || ||||| | |
Sbjct 6969041 CTCTTCAATGCCATTGAGACGATGCCTTGTGTGAAGAAGAAGGCAGATTGGGCCTTGCGC 6968982
Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728
|||| | | || || || | || || | ||||||||||| | || || ||
Sbjct 6968981 TGGACTGGGGACAAAGAAGCTACATATGGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAA 6968922
Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAAGGTGTCGAT 42787
||||||||||| || || | || || || || |||||||||||| | ||| | |||
Sbjct 6968921 GGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCTGGCTCAAGAAACGAGGACT-GAT 6968863
Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTT 42847
||| || ||||| || || || ||||| || ||||| || ||||| |||| | |||||
Sbjct 6968862 GCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGATGAGGGTTTGCACTGTGACTT 6968803
Query 42848 TGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGC 42907
| ||||||| ||||| | ||||| |||||| || ||||| || | || ||
Sbjct 6968802 TACCTGCCTGATGTTC---AAACACCTGTTGCACAAACCTTCGAAACAGAGAGTAAAGGA 6968746
Query 42908 CATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTC 42967
|| ||| | || || ||| || |||||||||| ||| || | ||||| |||
Sbjct 6968745 AATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCTTACGGAGGCCCTGCCTGTGAA 6968686
Query 42968 CCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCT 43027
|| | || ||||| | | ||| |||||||| ||| ||| || || ||
Sbjct 6968685 GCTCATTGGGATGAATTGCACTTTGATGAAGCAGTACATCGAGTTCGTGGCAGATAGACT 6968626
Query 43028 CCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGA 43087
|| || |||| | ||| | | ||| || || |||||||||||
Sbjct 6968625 TATGCTGGAGCTGGGCTTTAGCAAGGTTTTCAAAGTAGAAAATCCGTTTGACTTTATGGA 6968566
Query 43088 GAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
|| || || ||||||| ||||| ||||| || |||||| | || | ||| || |||
Sbjct 6968565 AAATATTTCACTGGAGGGGAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCAG 6968508
>seq608
Length=3558542
Score = 84.2 bits (92), Expect = 4e-11
Identities = 101/135 (75%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755
|| || ||| |||| |||||| | || || || || || ||||||||||| | || ||
Sbjct 2088467 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 2088526
Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814
| || |||||||| ||| | | ||| || ||||| |||||||| || || || || ||
Sbjct 2088527 GCTATATTCTGGCTAAAGAAAAGAGGACTC-ATGCCTGGACTCACTTTTTCCAATGAGCT 2088585
Query 42815 CATCAGCAGGGACGA 42829
||||||||| || ||
Sbjct 2088586 CATCAGCAGAGATGA 2088600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944161439949840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |