Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq7272 381 1e-101 seq5906 89.7 1e-13 seq9683 82.4 2e-11 >seq7272 Length=98981 Score = 381 bits (422), Expect = 1e-101 Identities = 1490/2312 (64%), Gaps = 141/2312 (6%) Strand=Plus/Plus Query 2875 GCCCGTCGAGCGCATCGAGGCATCGCTCGAAGTGCGCATGATGGTGTTGATCGCGAAGGA 2934 |||||| ||||| |||||| |||||| ||| ||||| || | | ||| ||||| Sbjct 40776 GCCCGTGGAGCGTGTCGAGGGATCGCTGGAAATGCGCCTGTGCACGCTCATCAACAAGGA 40835 Query 2935 GAAGAAGGACGGCGCGGACTACAAGGAAATCGACCTGCTCGGCCG--CCAAGTCGAGCGG 2992 | |||| | || |||||||||||||||||| ||| || || ||| | ||||| Sbjct 40836 GGGCAAGGGCAACGGCGACTACAAGGAAATCGACGCGCTGGGGCGTGCCATG--GAGCGC 40893 Query 2993 CTCGCGCGCGTGCGCAAGTACGACGAGACGGGGAAGGAATCGGACCTGAACCCGAAGATT 3052 | |||||||||| ||| ||||| ||||| |||||||| ||||| |||| ||| Sbjct 40894 TTGGCGCGCGTGCACAAATACGAGCGCACGGGCCGAGAATCGGATCTGAATCCGACCATT 40953 Query 3053 GCGTCGCGCAACGCCGGCCCGAA-----ACGCCGTGCGC---CCCGTAACGAAATCAGCG 3104 | |||||| ||||| || || | ||| |||| | | | ||| || || Sbjct 40954 GAAAAGCGCAATGCCGGACCTAAGAAGCAGCCCGAGCGCAATCACTTCACG---TC--CG 41008 Query 3105 ACGAACAGCACAAGCGCATCATCGAAGCGTTCCGCGATTCGCTGTTCGACTATCAGAAAG 3164 | || | ||||| || || | || || | |||||||| ||| |||| || || Sbjct 41009 AGGACGTGGACAAGATCA-CACGG--GCATTTCTGGATTCGCTTTTCAACTACCAAAACA 41065 Query 3165 TCTGGTATCGGAACGG--CGATCAGCGCACGCGCAACATCCTGAAATCGCGGCAGATCGG 3222 |||| ||| | | | | |||||||||||| ||| || |||||||| |||||||| Sbjct 41066 CATGGTG--GGAGCAGATCCAGCAGCGCACGCGCGCCATTCTCAAATCGCGCCAGATCGG 41123 Query 3223 TGCGACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCGCTCGACACCGACCGCAATCA 3282 || ||||||||||||| |||||||| || | || || || | || | ||||||||| Sbjct 41124 GGCAACGTGGTACTTCGGCCGCGAGGCCCTGATTGATGCCCTGAAGACGGGCCGCAATCA 41183 Query 3283 GATCTTCCTATCGGCCAGCAAGGCGCAGGCGCACGTCTTCAAGCAATACATCA-CGCAGT 3341 ||| || || ||||||||| |||||||| || || ||| ||| ||||||| ||| || Sbjct 41184 GATTTTTCTTTCGGCCAGCCGTGCGCAGGCCCATGTTTTCCGGCAGTACATCATCGC-GT 41242 Query 3342 TCGC----GCGCGATGCCGCCGACGTCGAGCTCACGGGCGACCCGATCATCTTGCCGAGC 3397 | || | || ||| || |||| | | ||||||||| ||| || || | Sbjct 41243 TTGCCAAGGAGCATTGC----GATATCGATTTGAAGGGCGACCCCATCGTCCTGAGCAAT 41298 Query 3398 GGTGCGACGCTGTACTTCCTGGGGACGAACGCGCGTACCGCGCAGTCGTATCACGGCAAC 3457 || || |||||||| |||||||| |||| ||| || |||||||||||||| |||||||| Sbjct 41299 GGCGCCACGCTGTATTTCCTGGGCACGAGCGCCCGCACCGCGCAGTCGTACCACGGCAAT 41358 Query 3458 TTCTATTTCGACGAATACTTTTGGGTTCCGAAGTTCCGCGAGTTGAACAAGGTTGCGTCG 3517 |||||||||| |||| ||||||||| || ||| ||| || ||||| || Sbjct 41359 CTCTATTTCGATGAATTCTTTTGGGTCAACAACTTCACGGAGCTGTGGAAGGTGGCCAGC 41418 Query 3518 GGCATGGCGATGCACAAGCGCTGGCGCAAGACCTACTTCAGCACGCCGTCGAGTGTCACG 3577 || ||||| || ||||||| ||||||||||| || |||||| || | | Sbjct 41419 GGTATGGCCATCCACAAGCATTGGCGCAAGACGCTGTTTTCCACGCCCAGCAGCCTGCAG 41478 Query 3578 CACGAGGCGTTCGCGTTCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCGCGGGCGAG 3637 ||| |||| | ||| | ||||||| || | | ||| |||||| || Sbjct 41479 CACCAGGCCTATGCGCTGTGGAGCGCCGAACGCATCAACAAGAAGCGCGCCAAAAAGGAC 41538 Query 3638 CGCATCCAGATCGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGACGCG 3697 ||||| || | ||| |||||| | || | | ||| | |||||||| | Sbjct 41539 CGCATAGAGCTGGACCTGAGCCATTCGCACCTGGCTGGAGGCTTCACCGGCGAGGACAAG 41598 Query 3698 CAGTGGCGGCAGATCGTGACCGTGCTCGACGCGATGGCGGGCGGCTGCAACCTGTTCGAC 3757 ||||||||||| || || ||||| || ||| | ||||||||||| ||||||||| Sbjct 41599 ATATGGCGGCAGATTGTCACGGTGCTGGATGCGCAGCGCGGCGGCTGCAATCTGTTCGAC 41658 Query 3758 ATCGACGAGCTGCGCCGCGAATACAGCGCCGAGGAATTCGCGAACCTGCTGATGTGCCAC 3817 | ||||| |||||| ||| || | |||||||| | |||||||| |||||| Sbjct 41659 CTTGACGAACTGCGCTTCGAGTATTCGGACGAGGAATGGGACAACCTGCTCATGTGCGGG 41718 Query 3818 TTCATCGACGA----TTCGCTGTCGGTGTTCAAGCTGTCGGACCTGCAACGCTGCATGGT 3873 || |||| || |||||| || ||| |||||| ||| |||||| | Sbjct 41719 TTTGTCGATGACACCTTCGCT----GTTTTCCCGCTGTCCACGCTGATGCGCTGCCATGC 41774 Query 3874 CGACTCGTGGGAGGAATGGGCGGA-CGACTTTTCGCCGCTGCTGCTGCGTCCGTTCGGTC 3932 ||| |||| ||| | ||| ||| || ||| | | |||| ||||| || | Sbjct 41775 GGACAGCTGGG----ATGCGTGGAGCGATTTCAAGCCCTTCACGTTGCGGCCGTTTGGCC 41830 Query 3933 ATCGCGAGGTGTGGGTCGGCTACGATCCGGCGCTCACGGGCGACTCGGCGGGGCTCGNNN 3992 | || ||| | ||||| || || | ||||||||||||||||| || | Sbjct 41831 AAAAGCCCGTCTGGATTGGCTATGACCCCAGCCATACGGGCGACTCGGCGGGCCTTGTAG 41890 Query 3993 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCGCGTGCTCGAACGTCACCAGTTCC 4052 |||||| |||| || || |||||| Sbjct 41891 TGCTGGCCCCGCCAGAAAAGCCGGGCGGCAAGTTCCGCATGCTGGAGCGCATGCAGTTCA 41950 Query 4053 GCGGCAACGACTTTGAGGAACAGGCCGCGGCAATCGAGGCGATCACGCAGCGCTACAACG 4112 || |||||||| | ||||||| | ||| ||| || || ||||||| Sbjct 41951 AGGGAGCGGACTTTGAAGCGCAGGCCGAAGTCATCCGCCAGATGACAGAGAAATACAACG 42010 Query 4113 TCGGCTACATCGCGATCGACACCACGGGCATGGGGCAAGGCGTCTACCAGCTCGTGCGCA 4172 | | ||||| || || |||| || |||| || |||||| ||| ||||| | Sbjct 42011 TGGCACACATCTGCATTGATTCCACAGGTCTGGGCCAGGGCGTCCTGCAGATCGTGAAAA 42070 Query 4173 AGTTCTTCCCGGCCGCCGTCGCGCTGAACTACTCGCCCGAGGTGAAAACCCGCCTCGTGC 4232 ||||||||||||| | | || | ||| ||||| ||||| ||||| ||| Sbjct 42071 AGTTCTTCCCGGCTGTGAAGTCATTGCAGTACAGCGTGGAGGTCAAAACGCGCCTGGTGA 42130 Query 4233 TCAAGGGCCAGTCCGTCGTCCGGAACGGCCGCCTGCAATTCGACGCGGGCTGGAC--CGA 4290 | |||| || | | | || ||||||| | | ||||| | ||| ||| || Sbjct 42131 TGAAGGCGCAAAGCCTTATGCGAGCCGGCCGCTTTGAGTTCGATTCTGGC--GACGTGGA 42188 Query 4291 TCTGGCGGCGGCG-TTCATGGCGATCAAACAGACGATGACGGCGAGCGGCCGCCAG-GCG 4348 || || ||| | || ||||| | || | ||||||| | | | | || | | Sbjct 42189 CCT-GCAGCGCAGTTTTATGGCCGTGAAGCGCGAAATGACGG-GCTCTGGCAAGAGCGTG 42246 Query 4349 ACCTACACCGCCGGCCGTACCGAGGAAACCGGCCACGCCGATCTGGCGTGGGCCTGCCTG 4408 ||||| || |||||| | || || |||||||| |||||||| ||||||||| || Sbjct 42247 ACCTATGGGGCGGGCCGTGGTGGCGAGACAGGCCACGCGGATCTGGCCTGGGCCTGCATG 42306 Query 4409 CACGCAATCGACCGCGAGCCGC---------TCGCCGGCGGCGGCATT--CATTC-TTCT 4456 | || || ||| |||||||| |||||| |||||| || || || | Sbjct 42307 AATGCGATGGACAACGAGCCGCTGGAGGCCGTCGCCGTGGGCGGCGTTCCCAGTCGCACG 42366 Query 4457 TCTTTCACGGAGTTTTACGCATGAGCAAgcgccgatcgcgcgcgccgcgcacgttcgcgg 4516 |||| |||| ||||| |||| || | || | |||| || |||| Sbjct 42367 ACTTT---GGAGATTTACTGATGA-CAGACACC-ACAGCGC--------CA-----GCGG 42408 Query 4517 ccgcgcccaatccgagcgccggcagcgccgcgccggcgcgtgccgAGGTCTTCACGTTCG 4576 || | || || | |||||||| |||||||| ||| | |||| Sbjct 42409 ----GCACCAT--GA------------CGGCGCCGGCCACTGCCGAGGCTTTCTCTTTCG 42450 Query 4577 ACGATCCGACGCCCGTCATGAACCGGGCCGAGATTCTCGATTACGTCGAGTGCTGGTCGA 4636 |||||| | |||| || ||||| ||| || | |||||||| || |||||| | Sbjct 42451 GCGATCCCGAGGCCGTGCTGGACCGGCGCGAAATCTTGGATTACGTGGAATGCTGGCTCA 42510 Query 4637 ACGGCGAATGGTTCGAGCCGCCGGTCAGCTTCGCCGGCCTGGCGAAATCGTTTCGCGCGA 4696 | || || |||| ||| | || ||||||||| || |||||| || | ||||| Sbjct 42511 ATGGGGATTGGTACGAAACCCCCATCAGCTTCGATGGTCTGGCGCGCACGCTGCGCGCTG 42570 Query 4697 GCACGCACCATAGCTCG---GCGCTGTTC--TTCAAGGCGAACGTGCTGGCGTCGACGTT 4751 ||| ||||| || |||| | | |||||||| | ||||| || ||| | Sbjct 42571 CCACCCACCA-----CGAAAGCGCCATCCAATTCAAGGCCCAGGTGCTCGCCAGCACGCT 42625 Query 4752 CCGCCCGCA-CCGCTGGCTG--TCGCGGCACGCGTTCGAGCGGTGGGC-GCTC--GATTT 4805 ||||| || ||||| ||| |||| |||| | || |||||| |||| || || Sbjct 42626 GCGCCCTCATCCGCT-TCTGAACCGCGCCACG-----GTGCAGTGGGCTGCTCTGGACTT 42679 Query 4806 CCTGACGTTCGGCAACGGCTATCTGGAACGCCGCCGCAACATGGTC--GGCGGCACGCTG 4863 ||| |||||||| ||||| | || |||| |||| || ||| || ||| | || Sbjct 42680 CCTTGTTTTCGGCAATGGCTACTTTGAGCGCCCGCGCA--ATCGTCTGGGTGGCTCATTG 42737 Query 4864 CGGCTCGAGCC-CGCGCTCGCGAAGTACGTCCGGC-GCAAGGCCGATTTCAGCGGCTTCG 4921 | || | ||| || || || |||||| ||| ||| | | | | | || | Sbjct 42738 CCCCT-GCGCCACGTACTGGCCAAGTACACAAGGCGGCATCGTGGTCTGAAACTCTTTGG 42796 Query 4922 TGTACG-TGAACGGCTGGCAGGAGCGGCACGAGTTCGAGCCCGA---CAGCGTGTTCCAG 4977 | | || | || ||||||||| |||| ||| ||||| |||| | | ||| Sbjct 42797 TTTCCGCCGCAC--CTGGCAGGAAGAGCACACGTT---TCCCGAAGGCAGCATTTGCCAC 42851 Query 4978 CTCGTGCGGCCGGACATCAATCAGGAGGTCTATGGCCTGCCCGAGTATCTGAGCTCGCTG 5037 || | | ||| || | | ||||| ||||||| ||||| |||| ||| | ||||| Sbjct 42852 ATCCTCCAGCCCGATGTGCACCAGGAAATCTATGGACTGCCGCAGTACCTGGCCGCGCTG 42911 Query 5038 CACTCGGCCTGGCTGAACGAATCGTCGACGCTGTTCCGGCGCAAGTATTACGAGAACGGC 5097 || || |||||||| || || ||| | |||||||| |||||| ||||||| | || || Sbjct 42912 CAGTCCGCCTGGCTCAATGAGTCGGCCACGCTGTTTCGGCGCCGGTATTACAACAATGGG 42971 Query 5098 AGCCACGCCGGCTTCATCCTGTACATGACCGA 5129 ||||| ||||| | |||||| || ||| ||| Sbjct 42972 AGCCATGCCGGATACATCCTCTATCTGAGCGA 43003 Score = 197 bits (218), Expect = 3e-46 Identities = 530/790 (67%), Gaps = 34/790 (4%) Strand=Plus/Plus Query 857 AGTAGATCGACAGATTTGACAGCTTCGTGACCATCAGCGCGCGCTTCGG-GAAGAACGGC 915 ||||||| ||||| ||| ||| ||||| | ||| | | | ||| |||||| ||| Sbjct 38614 AGTAGATGGACAGGTTTTTCAGAGGCGTGATGAGCAGGCCAC-CGTCGATGAAGAAAGGC 38672 Query 916 ACGCGCACGGCC-GGCAGATTGCCGATGCGCTTCTGGCTCACGATCAGATCGGCCGCGAG 974 ||| ||||||| ||| | ||| | |||| |||||||||| | || |||||||| || Sbjct 38673 ACGGTCACGGCCTGGCTGCC-GCCCAGGCGCATCTGGCTCACCACCATGTCGGCCGCCAG 38731 Query 975 CCGCTCGGTCGGCGCCTGCGTCGC-GTTGACGATCGGGAAATACTTGTCGTGCAGCAGCT 1033 |||||| | ||| | ||| | ||| ||||| ||||| |||||| |||| ||| | Sbjct 38732 GCGCTCGCTGGGCAGAT-CGTTGTTGTTCACGATGGGGAACAGCTTGTCATGCATCAGGT 38790 Query 1034 CGCGGCCGCAGATCGCGACGAGGCCCGTGT-CTTCCTGGAACCACGGGTCGATCATCGAC 1092 | || |||||| ||| || ||| || ||| | || ||||| || |||| ||| Sbjct 38791 CATCGCTGCAGATGGCGCGCAGATCCGGGTGCTTGC-GGTGCCACGAATCAATCAGCGAG 38849 Query 1093 GACACGATATCCATCACGAGCGCGTCGAGGTTCTCGTAATCGCCCGCCTTGCCGACGAGC 1152 | | |||||| | || ||||||||||||| ||| ||||| || || || Sbjct 38850 TGCTTGGCATCCATGGCCAGGGCGTCGAGGTTCTTGTAGTCGCCACCCGGTCCCACAGTG 38909 Query 1153 ACCTTGCCGGCCTGCTTCGCGCCTTCGTGCAGCACGCGCTGTGCCGCGCGCTCGCGGTAC 1212 |||||||| ||| ||| ||| || ||||||| | ||| ||||| Sbjct 38910 ACCTTGCCCGCCACCTT---GCCAGAAGACATGACGCGCTCGGGCGCCTCTTCGCGCAGG 38966 Query 1213 TGTTGCAGCCAACCGATGTTCACGTCCTGCAACAGCGGGTTTGCCTGACGGTCAG--TCG 1270 | |||||||| || || ||| ||||||| || ||||| || ||||| | | Sbjct 38967 CGCTGCAGCCACCCCTTGGTCAGATCCTGCAGCAAAGGGTTGGC-----GGTCAAGTTGG 39021 Query 1271 TCGCGGCC---GCCTTCACGCCGTTCCAGCCGATCATGATGCGATCGAGCGCCCCCTGGT 1327 | | |||| || | | ||||||||| || | ||||||||| || ||||| | | Sbjct 39022 TGGTGGCCTTGGCTTCCTTGCCGTTCCATCCCACCATGATGCGGTCCAGCGCATTGCGTT 39081 Query 1328 TGAGGATCACGTCGCGGATGCGCTGTTGGAAGTCGGCGAACTTCGCCCATGCGTCGAGCT 1387 | |||| ||||| ||| ||| || ||||||| ||| | |||||| || |||||| Sbjct 39082 CGGCAATCAGGTCGCTGATACGCACCTGAAAGTCGGGGAAGTGCGCCCAGGCATCGAGCA 39141 Query 1388 T-GCGATACGGAATCGCCGTGTCGTAGTCGGTCTTCTCGCAGCGGTAGCGGTTGCTGTCG 1446 | ||| ||| || || ||| | || ||| | |||| |||| | | | |||| Sbjct 39142 TCGCG-TACTTGATGTGGGTATCGGAATCAATCTGCAGGCAGTGGTATCCGGTCTTGTCC 39200 Query 1447 AGCGCCGTCGGGTCGATCGGTTGGCGCGCGGCCTTC----GTCGTGTCGGTGCGGCTCGC 1502 | ||||| || | | | ||| | |||| || || ||||| |||||||| || Sbjct 39201 TTGCCTGTCGGATCTTTGGTCTTGCGGG-GGCCGTCAGCGGTGGTGTCCGTGCGGCTGGC 39259 Query 1503 GATCGGGCCGGACACGGACAGGCCGAGCTTTTCGCCTTCGAGCT-CGGT--CACGGGCAG 1559 || || | || || | ||| || | ||||||||| | ||| ||| ||||||||| Sbjct 39260 GACGGGACGGGTCAGGCTCAGACCCACCTTTTCGCCCT---GCTGCGGCACCACGGGCAG 39316 Query 1560 CACGTTGATGCGCTTGAGAAACTCGCTCGATTCCTGCATCTTCGTTTCGAGCCGCTGTTG 1619 | ||||||| ||| || || |||||||||||||| ||||| ||| ||| || Sbjct 39317 GATGTTGATGGACTTCAGGAATGAACTCGATTCCTGCATGCGGGTTTCCAGCTTCTGCTG 39376 Query 1620 CACGGTCGGC 1629 |||||||||| Sbjct 39377 CACGGTCGGC 39386 Score = 176 bits (194), Expect = 1e-39 Identities = 566/864 (66%), Gaps = 32/864 (4%) Strand=Plus/Plus Query 23326 CCACGCGCGCCGGGAAATCGGCGAGGAAGCGGTCGGTGATGCGCTGGCGCAGCACCAGAT 23385 |||||||| | ||| ||| ||| |||||||||||||||||||||| | |||| | Sbjct 24766 CCACGCGCATGGCGAAGTCGCCGAAATAGCGGTCGGTGATGCGCTGGCGGAATCCCAGGT 24825 Query 23386 TTTCGAGAGGCGGAACCGGCGTGTAGTCATAATCGATGTACGCCTTGCCGGACGCGAGAA 23445 ||| || ||||| || ||||||||||| || || | | |||||||| | ||| Sbjct 24826 CTTCCAGCGGCGGCACGGGCGTGTAGTCGTAGTCAAGCACCAGCTTGCCGGCCTTGAGCG 24885 Query 23446 TGTCGGCCGTGTTCGGCTCCGGATCGATCCACGCGCTACCGCCGATCAGGTAGCCGTTCG 23505 || | ||||| ||| | || | ||| |||| ||| ||| | |||||| | Sbjct 24886 CTTCTGTGGTGTTGACCTCGGCGTCAAACCAGGCGCGGCCGTCGAGGATGTAGCC---CA 24942 Query 23506 CGACCT---GCTGCCGAAACCAGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACG 23562 | ||| | | || ||| | | ||||||| |||||||||||| | | | | Sbjct 24943 GGGCCTTGAGTTCGCGGAACTTGGCATTGATGCCTTCCACGATGTCTTTCACCATGCTGG 25002 Query 23563 GATTCAGCGGGCCGTCGACGACGGGCATCTGCGCTTCGGCGATCGAATCGGCGGCCACCT 23622 | | || || |||||| | || | || | || || || | ||||| ||||| Sbjct 25003 GGTGCATGGGCTTGTCGACAAAGGCGAAATGACCCTCTGCCATGGTGTCGGCCAGCACCT 25062 Query 23623 GAGCGGTGCGCGTGTAGTTCTCGAACGCGAAC--TTCGGATCGTCCGAGCACGTGCGCTC 23680 | || |||||| | | |||||| |||| |||| ||| ||| |||||| Sbjct 25063 GGGCAGTGCGCACGCTGGACTCGAATCGGAACAGTTCG--TCGGTGCTGCAGGTGCGCGA 25120 Query 23681 GCCCCAGAACCGGAAGCCGTTGCGGTTCACGAGCGTCGTCACTTCGTGCTCGTTCAGGTA 23740 |||||||| || |||| | | ||| | |||||| || || | | ||| || || Sbjct 25121 TCCCCAGAAGCGATAGCCCTGGTAGTTGATGAGCGTGGTGACGTTGCCCTCATTGAGCAG 25180 Query 23741 GCCCGCATCGGTCGCCGGGTCCTGCAAATCCCACGACACGTCGGCGCTGATGCCGGACAC 23800 | || || ||| ||| | |||| || | |||||| ||||||||| | Sbjct 25181 GTTTGCGTCCGTCTCCGAGCTTTGCAGGTCGAAATGCACGTCCTTGCTGATGCCCACCGG 25240 Query 23801 GCCGTTCA-CGACGACATTCGAAATCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCG 23859 ||| || | || | || || || | ||||||||||| || || |||||| | Sbjct 25241 GCCATTTAGCGGC-ACGTTTGACAGGGTCTTGTGCCAACCTTGCTCCACGTCGATGCGGG 25299 Query 23860 CGCGCAAGC------CGGCGGCGATCGCCGGCGCCGGGATGACGGCCGTCGAGTTCGTCG 23913 |||||| | || ||| | |||||||| ||| |||| | ||| | || Sbjct 25300 CGCGCAGCCCCATCGCGTAGGCCACAGCCGGCGC---ATTGATGGCCTT---GTTTGCCG 25353 Query 23914 TGTCGTCCCAGCCGAGCCAGTCCGGCCAGATCACCATGATTTCGCGTTGGCCG-AACTGC 23972 || || |||| | | || ||||||||||||||| ||||||| |||| |||| | Sbjct 25354 TGGTGTTCCAGGCTTTGAAATCGGGCCAGATCACCATGGTTTCGCGGGCGCCGAAACTCC 25413 Query 23973 CTGCGGTACGCGGCGGCTT--CTTCCTTCGTCTTGCAGCCGGACGCCGACACATAGGCCA 24030 |||| ||||| ||| | || | ||||| | |||| | || ||| ||||||| Sbjct 25414 CTGC-ATACGCCAGGGCCTCGCTCACATCGTC--GGCGCCGTGCCCCTGCACGTAGGCCA 25470 Query 24031 TCGCGCGCAGC-GACTGCGCGGTCGCCGCGAGCGCGGCCGCGACCGGCTGCGTATCGAGG 24089 | ||||||||| | || |||| |||| ||| || |||| || |||| || || || Sbjct 25471 TGGCGCGCAGCTGGATG-GCGGCGGCCGTGAGGGCATCCGCCACGGGCTTGGTGTCCAGC 25529 Query 24090 CCGGGCGCGGCGAGAATGCGCGGCTTCACGCCGAGCGCACCCTGCGCGGCGAGCAGCGCC 24149 ||||| ||| | || ||||| || |||||||| ||| |||||||| || ||||||| Sbjct 25530 CCGGGGGCGCCCAGGATGCGGGGTTTCACGCCCAGCTGCTGCTGCGCGGTGATCAGCGCC 25589 Query 24150 TTGATGCCCGTGTACTTGCCGTCC 24173 | ||||| | | ||||||| || Sbjct 25590 TGAATGCCGGAGCGCTTGCCGGCC 25613 Score = 138 bits (152), Expect = 3e-28 Identities = 166/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 5228 GCGGGAAGAAGGACGGCATCCAGCTCATTCCCGTGTCCGAGGTCGCCGCGAAGGACGAGT 5287 |||| || || | | |||||| || | ||| | ||||| || || ||||| || | Sbjct 43102 GCGGCAAAGAGAAAGCCATCCAACTGCTGCCCATCGGCGAGGCGGCGGCCAAGGATGAAT 43161 Query 5288 TCTTCAACATCAAGAACGTGACGCGCGACGATCTGCTCGCCGCGCACCGCGTGCCGCCGC 5347 | ||||||||||||||||||| ||||| || | | ||||| ||||||||||| |||| Sbjct 43162 TTTTCAACATCAAGAACGTGAGCCGCGATGACCAATTGGCCGCCCACCGCGTGCCTCCGC 43221 Query 5348 AGTTGCTCGGCATCGTGCCGAGCAATTCGGGCGGGTTCGGCACGCCGGATACCGCCGCGC 5407 || | | ||| | |||||| |||| | || || |||||| || | ||| || | Sbjct 43222 AGCTCATGGGCGTGGTGCCGGCCAATGCAGGTGGCTTCGGCGATGTGGTCAACGCTGCAC 43281 Query 5408 GTGTGTTCGGGCGCAACGAAATCAGGCCGCTACAGGCGCGCTTCGC 5453 | ||||||| ||||||||||||| ||| || ||| |||||||||| Sbjct 43282 GGGTGTTCGCGCGCAACGAAATCCAGCCCCTGCAGACGCGCTTCGC 43327 Score = 102 bits (112), Expect = 2e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 2132 GCTTCGCGGCGAATTGCAGCGCTTCGGTGCCGAGGCTCGCCGGGTCGTCGGTCGCCGCGA 2191 ||| |||||| || |||||| |||||||| ||||| ||||| |||||| | || | Sbjct 39967 GCTGCGCGGCAAACTGCAGCATCTCGGTGCCCAGGCTGGCCGGCGTGTCGGTGACGGCCA 40026 Query 2192 GCCCAACGAGATACGCCTCGCCGATGTCGGCGAAGTCGGGGTTGATCTCGATCGACGTGA 2251 | || || | ||| ||||| ||| | | ||||| ||||||| | |||||| || || Sbjct 40027 GGCCGACCATATAGGCCTCTCCGGAGCCCGCGAAATCGGGGTCCACCTCGATGGAGGTAT 40086 Query 2252 AGAGCTTCTGGCGCTTCTTCGACAGCGCGACGAGCTCGTCGGTCGGATCGATCTGCGCAT 2311 |||||||||||| ||||| | |||| || ||| || | |||||||||| Sbjct 40087 AGAGCTTCTGGCCCTTCTGGTTGATGGCGATCAGAGAGTCCAGGGGCTGAATCTGCGCAT 40146 Query 2312 ACAGCGCCATCTTCCC 2327 ||||||| | ||| || Sbjct 40147 ACAGCGCGAGCTTGCC 40162 >seq5906 Length=1255 Score = 89.7 bits (98), Expect = 1e-13 Identities = 224/334 (67%), Gaps = 10/334 (3%) Strand=Plus/Plus Query 24060 AGCGCGGCCGCGACCGGCTGCGTATCGAGGCCGGGCGCGGCGAGAATGCGCGGCTTCACG 24119 ||||| | || |||| |||||| || |||||||| | | |||| || ||||| || Sbjct 293 AGCGCCGTCGTCACCGCCTGCGTTTCAAGGCCGGGGGTGACGAGGATCTTTGGCTTGACC 352 Query 24120 CCGAGCGCACCCTGCGCGGCGAGCAGCGCCTTGATGCCCGTGTACTTGCCGTCCGGCGTC 24179 || ||| ||||||| || |||||||||| || || || | | ||||| |||||| Sbjct 353 CCCAGCTGCGCCTGCGCCGCCAGCAGCGCCTGCATACCTGTCTTTTGGCCGTT-GGCGTC 411 Query 24180 ACG-GTGCCGATGACGTTCGAGGTCGTCTCGTCGGCGTCCTTGCCTTCGGCGACGCGCAC 24238 || |||||||| || || || || | || || | |||||||| ||||| || Sbjct 412 GGTCGTACCGATGACATTGCTGGCGGTTTCCGCCGCATCGTCCCCTTCGGCCACGCGGAC 471 Query 24239 GACGACGGTCAGCGGCTTCGTCTGCTTGCCGATCGCGTCGAGCGTGCGGCGCAGCGTGCC 24298 ||||| | | ||| | || | | |||| ||| |||| || ||||||||| Sbjct 472 CACGACAATGATCGGGCGAGCATGATCGGCGATGGCGCGCAGCGACAGGGCCAGCGTGCC 531 Query 24299 TTTCTTGCCGGCCTTGCCGAGCGCGGCGACGACGTTCGTCAGCAGCAC-GGGCGTATTGA 24357 | | | ||||| ||||| |||| | || | || | ||| | ||||| || || Sbjct 532 GTCCGTCCCGGCGGCGCCGATGGCGGTTTCAACATCGGTGATGAGCGCCGGGCG-ATCGA 590 Query 24358 GCGGAAACGCGCTCGCG---TCAGCGTCGGCCGC 24388 |||| || | | ||| |||||||||||||| Sbjct 591 GCGGGAA---GATAGCGGGATCAGCGTCGGCCGC 621 >seq9683 Length=137075 Score = 82.4 bits (90), Expect = 2e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 8123 GCCACGTGGTCCCGCCCGAGGTGCGCGTAGCGCAGCACCATCTGATAGC-TGGCCCATCC 8181 |||| ||| ||| || | ||||| || || | |||||||| ||| | ||| || Sbjct 49437 GCCAAGTGCTCCGGCGCCAGGTGGGCATATTTCTTCACCATCTCC-AGCGTCTTCCAGCC 49495 Query 8182 TCCGAGCTGCTGAAGGATTGGCAGAGGCGTGCCGGCCTGAACGTGCCAGCTCGCCCACGT 8241 ||| |||| || |||| ||| |||||||||| || || |||||||||||||| || Sbjct 49496 TCCCAGCTCCTTCAGGACGAACAGGGGCGTGCCGGATTGGACATGCCAGCTCGCCCAGGT 49555 Query 8242 GTGCCGCAGATCATGAAAGCGCAA 8265 ||||||||| || || ||||| || Sbjct 49556 GTGCCGCAGGTCGTGGAAGCGGAA 49579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114229169243874