Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_009234.1
Length=35741
Score E
Sequences producing significant alignments: (Bits) Value
seq7272 381 1e-101
seq5906 89.7 1e-13
seq9683 82.4 2e-11
>seq7272
Length=98981
Score = 381 bits (422), Expect = 1e-101
Identities = 1490/2312 (64%), Gaps = 141/2312 (6%)
Strand=Plus/Plus
Query 2875 GCCCGTCGAGCGCATCGAGGCATCGCTCGAAGTGCGCATGATGGTGTTGATCGCGAAGGA 2934
|||||| ||||| |||||| |||||| ||| ||||| || | | ||| |||||
Sbjct 40776 GCCCGTGGAGCGTGTCGAGGGATCGCTGGAAATGCGCCTGTGCACGCTCATCAACAAGGA 40835
Query 2935 GAAGAAGGACGGCGCGGACTACAAGGAAATCGACCTGCTCGGCCG--CCAAGTCGAGCGG 2992
| |||| | || |||||||||||||||||| ||| || || ||| | |||||
Sbjct 40836 GGGCAAGGGCAACGGCGACTACAAGGAAATCGACGCGCTGGGGCGTGCCATG--GAGCGC 40893
Query 2993 CTCGCGCGCGTGCGCAAGTACGACGAGACGGGGAAGGAATCGGACCTGAACCCGAAGATT 3052
| |||||||||| ||| ||||| ||||| |||||||| ||||| |||| |||
Sbjct 40894 TTGGCGCGCGTGCACAAATACGAGCGCACGGGCCGAGAATCGGATCTGAATCCGACCATT 40953
Query 3053 GCGTCGCGCAACGCCGGCCCGAA-----ACGCCGTGCGC---CCCGTAACGAAATCAGCG 3104
| |||||| ||||| || || | ||| |||| | | | ||| || ||
Sbjct 40954 GAAAAGCGCAATGCCGGACCTAAGAAGCAGCCCGAGCGCAATCACTTCACG---TC--CG 41008
Query 3105 ACGAACAGCACAAGCGCATCATCGAAGCGTTCCGCGATTCGCTGTTCGACTATCAGAAAG 3164
| || | ||||| || || | || || | |||||||| ||| |||| || ||
Sbjct 41009 AGGACGTGGACAAGATCA-CACGG--GCATTTCTGGATTCGCTTTTCAACTACCAAAACA 41065
Query 3165 TCTGGTATCGGAACGG--CGATCAGCGCACGCGCAACATCCTGAAATCGCGGCAGATCGG 3222
|||| ||| | | | | |||||||||||| ||| || |||||||| ||||||||
Sbjct 41066 CATGGTG--GGAGCAGATCCAGCAGCGCACGCGCGCCATTCTCAAATCGCGCCAGATCGG 41123
Query 3223 TGCGACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCGCTCGACACCGACCGCAATCA 3282
|| ||||||||||||| |||||||| || | || || || | || | |||||||||
Sbjct 41124 GGCAACGTGGTACTTCGGCCGCGAGGCCCTGATTGATGCCCTGAAGACGGGCCGCAATCA 41183
Query 3283 GATCTTCCTATCGGCCAGCAAGGCGCAGGCGCACGTCTTCAAGCAATACATCA-CGCAGT 3341
||| || || ||||||||| |||||||| || || ||| ||| ||||||| ||| ||
Sbjct 41184 GATTTTTCTTTCGGCCAGCCGTGCGCAGGCCCATGTTTTCCGGCAGTACATCATCGC-GT 41242
Query 3342 TCGC----GCGCGATGCCGCCGACGTCGAGCTCACGGGCGACCCGATCATCTTGCCGAGC 3397
| || | || ||| || |||| | | ||||||||| ||| || || |
Sbjct 41243 TTGCCAAGGAGCATTGC----GATATCGATTTGAAGGGCGACCCCATCGTCCTGAGCAAT 41298
Query 3398 GGTGCGACGCTGTACTTCCTGGGGACGAACGCGCGTACCGCGCAGTCGTATCACGGCAAC 3457
|| || |||||||| |||||||| |||| ||| || |||||||||||||| ||||||||
Sbjct 41299 GGCGCCACGCTGTATTTCCTGGGCACGAGCGCCCGCACCGCGCAGTCGTACCACGGCAAT 41358
Query 3458 TTCTATTTCGACGAATACTTTTGGGTTCCGAAGTTCCGCGAGTTGAACAAGGTTGCGTCG 3517
|||||||||| |||| ||||||||| || ||| ||| || ||||| ||
Sbjct 41359 CTCTATTTCGATGAATTCTTTTGGGTCAACAACTTCACGGAGCTGTGGAAGGTGGCCAGC 41418
Query 3518 GGCATGGCGATGCACAAGCGCTGGCGCAAGACCTACTTCAGCACGCCGTCGAGTGTCACG 3577
|| ||||| || ||||||| ||||||||||| || |||||| || | |
Sbjct 41419 GGTATGGCCATCCACAAGCATTGGCGCAAGACGCTGTTTTCCACGCCCAGCAGCCTGCAG 41478
Query 3578 CACGAGGCGTTCGCGTTCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCGCGGGCGAG 3637
||| |||| | ||| | ||||||| || | | ||| |||||| ||
Sbjct 41479 CACCAGGCCTATGCGCTGTGGAGCGCCGAACGCATCAACAAGAAGCGCGCCAAAAAGGAC 41538
Query 3638 CGCATCCAGATCGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGACGCG 3697
||||| || | ||| |||||| | || | | ||| | |||||||| |
Sbjct 41539 CGCATAGAGCTGGACCTGAGCCATTCGCACCTGGCTGGAGGCTTCACCGGCGAGGACAAG 41598
Query 3698 CAGTGGCGGCAGATCGTGACCGTGCTCGACGCGATGGCGGGCGGCTGCAACCTGTTCGAC 3757
||||||||||| || || ||||| || ||| | ||||||||||| |||||||||
Sbjct 41599 ATATGGCGGCAGATTGTCACGGTGCTGGATGCGCAGCGCGGCGGCTGCAATCTGTTCGAC 41658
Query 3758 ATCGACGAGCTGCGCCGCGAATACAGCGCCGAGGAATTCGCGAACCTGCTGATGTGCCAC 3817
| ||||| |||||| ||| || | |||||||| | |||||||| ||||||
Sbjct 41659 CTTGACGAACTGCGCTTCGAGTATTCGGACGAGGAATGGGACAACCTGCTCATGTGCGGG 41718
Query 3818 TTCATCGACGA----TTCGCTGTCGGTGTTCAAGCTGTCGGACCTGCAACGCTGCATGGT 3873
|| |||| || |||||| || ||| |||||| ||| |||||| |
Sbjct 41719 TTTGTCGATGACACCTTCGCT----GTTTTCCCGCTGTCCACGCTGATGCGCTGCCATGC 41774
Query 3874 CGACTCGTGGGAGGAATGGGCGGA-CGACTTTTCGCCGCTGCTGCTGCGTCCGTTCGGTC 3932
||| |||| ||| | ||| ||| || ||| | | |||| ||||| || |
Sbjct 41775 GGACAGCTGGG----ATGCGTGGAGCGATTTCAAGCCCTTCACGTTGCGGCCGTTTGGCC 41830
Query 3933 ATCGCGAGGTGTGGGTCGGCTACGATCCGGCGCTCACGGGCGACTCGGCGGGGCTCGNNN 3992
| || ||| | ||||| || || | ||||||||||||||||| || |
Sbjct 41831 AAAAGCCCGTCTGGATTGGCTATGACCCCAGCCATACGGGCGACTCGGCGGGCCTTGTAG 41890
Query 3993 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCGCGTGCTCGAACGTCACCAGTTCC 4052
|||||| |||| || || ||||||
Sbjct 41891 TGCTGGCCCCGCCAGAAAAGCCGGGCGGCAAGTTCCGCATGCTGGAGCGCATGCAGTTCA 41950
Query 4053 GCGGCAACGACTTTGAGGAACAGGCCGCGGCAATCGAGGCGATCACGCAGCGCTACAACG 4112
|| |||||||| | ||||||| | ||| ||| || || |||||||
Sbjct 41951 AGGGAGCGGACTTTGAAGCGCAGGCCGAAGTCATCCGCCAGATGACAGAGAAATACAACG 42010
Query 4113 TCGGCTACATCGCGATCGACACCACGGGCATGGGGCAAGGCGTCTACCAGCTCGTGCGCA 4172
| | ||||| || || |||| || |||| || |||||| ||| ||||| |
Sbjct 42011 TGGCACACATCTGCATTGATTCCACAGGTCTGGGCCAGGGCGTCCTGCAGATCGTGAAAA 42070
Query 4173 AGTTCTTCCCGGCCGCCGTCGCGCTGAACTACTCGCCCGAGGTGAAAACCCGCCTCGTGC 4232
||||||||||||| | | || | ||| ||||| ||||| ||||| |||
Sbjct 42071 AGTTCTTCCCGGCTGTGAAGTCATTGCAGTACAGCGTGGAGGTCAAAACGCGCCTGGTGA 42130
Query 4233 TCAAGGGCCAGTCCGTCGTCCGGAACGGCCGCCTGCAATTCGACGCGGGCTGGAC--CGA 4290
| |||| || | | | || ||||||| | | ||||| | ||| ||| ||
Sbjct 42131 TGAAGGCGCAAAGCCTTATGCGAGCCGGCCGCTTTGAGTTCGATTCTGGC--GACGTGGA 42188
Query 4291 TCTGGCGGCGGCG-TTCATGGCGATCAAACAGACGATGACGGCGAGCGGCCGCCAG-GCG 4348
|| || ||| | || ||||| | || | ||||||| | | | | || | |
Sbjct 42189 CCT-GCAGCGCAGTTTTATGGCCGTGAAGCGCGAAATGACGG-GCTCTGGCAAGAGCGTG 42246
Query 4349 ACCTACACCGCCGGCCGTACCGAGGAAACCGGCCACGCCGATCTGGCGTGGGCCTGCCTG 4408
||||| || |||||| | || || |||||||| |||||||| ||||||||| ||
Sbjct 42247 ACCTATGGGGCGGGCCGTGGTGGCGAGACAGGCCACGCGGATCTGGCCTGGGCCTGCATG 42306
Query 4409 CACGCAATCGACCGCGAGCCGC---------TCGCCGGCGGCGGCATT--CATTC-TTCT 4456
| || || ||| |||||||| |||||| |||||| || || || |
Sbjct 42307 AATGCGATGGACAACGAGCCGCTGGAGGCCGTCGCCGTGGGCGGCGTTCCCAGTCGCACG 42366
Query 4457 TCTTTCACGGAGTTTTACGCATGAGCAAgcgccgatcgcgcgcgccgcgcacgttcgcgg 4516
|||| |||| ||||| |||| || | || | |||| || ||||
Sbjct 42367 ACTTT---GGAGATTTACTGATGA-CAGACACC-ACAGCGC--------CA-----GCGG 42408
Query 4517 ccgcgcccaatccgagcgccggcagcgccgcgccggcgcgtgccgAGGTCTTCACGTTCG 4576
|| | || || | |||||||| |||||||| ||| | ||||
Sbjct 42409 ----GCACCAT--GA------------CGGCGCCGGCCACTGCCGAGGCTTTCTCTTTCG 42450
Query 4577 ACGATCCGACGCCCGTCATGAACCGGGCCGAGATTCTCGATTACGTCGAGTGCTGGTCGA 4636
|||||| | |||| || ||||| ||| || | |||||||| || |||||| |
Sbjct 42451 GCGATCCCGAGGCCGTGCTGGACCGGCGCGAAATCTTGGATTACGTGGAATGCTGGCTCA 42510
Query 4637 ACGGCGAATGGTTCGAGCCGCCGGTCAGCTTCGCCGGCCTGGCGAAATCGTTTCGCGCGA 4696
| || || |||| ||| | || ||||||||| || |||||| || | |||||
Sbjct 42511 ATGGGGATTGGTACGAAACCCCCATCAGCTTCGATGGTCTGGCGCGCACGCTGCGCGCTG 42570
Query 4697 GCACGCACCATAGCTCG---GCGCTGTTC--TTCAAGGCGAACGTGCTGGCGTCGACGTT 4751
||| ||||| || |||| | | |||||||| | ||||| || ||| |
Sbjct 42571 CCACCCACCA-----CGAAAGCGCCATCCAATTCAAGGCCCAGGTGCTCGCCAGCACGCT 42625
Query 4752 CCGCCCGCA-CCGCTGGCTG--TCGCGGCACGCGTTCGAGCGGTGGGC-GCTC--GATTT 4805
||||| || ||||| ||| |||| |||| | || |||||| |||| || ||
Sbjct 42626 GCGCCCTCATCCGCT-TCTGAACCGCGCCACG-----GTGCAGTGGGCTGCTCTGGACTT 42679
Query 4806 CCTGACGTTCGGCAACGGCTATCTGGAACGCCGCCGCAACATGGTC--GGCGGCACGCTG 4863
||| |||||||| ||||| | || |||| |||| || ||| || ||| | ||
Sbjct 42680 CCTTGTTTTCGGCAATGGCTACTTTGAGCGCCCGCGCA--ATCGTCTGGGTGGCTCATTG 42737
Query 4864 CGGCTCGAGCC-CGCGCTCGCGAAGTACGTCCGGC-GCAAGGCCGATTTCAGCGGCTTCG 4921
| || | ||| || || || |||||| ||| ||| | | | | | || |
Sbjct 42738 CCCCT-GCGCCACGTACTGGCCAAGTACACAAGGCGGCATCGTGGTCTGAAACTCTTTGG 42796
Query 4922 TGTACG-TGAACGGCTGGCAGGAGCGGCACGAGTTCGAGCCCGA---CAGCGTGTTCCAG 4977
| | || | || ||||||||| |||| ||| ||||| |||| | | |||
Sbjct 42797 TTTCCGCCGCAC--CTGGCAGGAAGAGCACACGTT---TCCCGAAGGCAGCATTTGCCAC 42851
Query 4978 CTCGTGCGGCCGGACATCAATCAGGAGGTCTATGGCCTGCCCGAGTATCTGAGCTCGCTG 5037
|| | | ||| || | | ||||| ||||||| ||||| |||| ||| | |||||
Sbjct 42852 ATCCTCCAGCCCGATGTGCACCAGGAAATCTATGGACTGCCGCAGTACCTGGCCGCGCTG 42911
Query 5038 CACTCGGCCTGGCTGAACGAATCGTCGACGCTGTTCCGGCGCAAGTATTACGAGAACGGC 5097
|| || |||||||| || || ||| | |||||||| |||||| ||||||| | || ||
Sbjct 42912 CAGTCCGCCTGGCTCAATGAGTCGGCCACGCTGTTTCGGCGCCGGTATTACAACAATGGG 42971
Query 5098 AGCCACGCCGGCTTCATCCTGTACATGACCGA 5129
||||| ||||| | |||||| || ||| |||
Sbjct 42972 AGCCATGCCGGATACATCCTCTATCTGAGCGA 43003
Score = 197 bits (218), Expect = 3e-46
Identities = 530/790 (67%), Gaps = 34/790 (4%)
Strand=Plus/Plus
Query 857 AGTAGATCGACAGATTTGACAGCTTCGTGACCATCAGCGCGCGCTTCGG-GAAGAACGGC 915
||||||| ||||| ||| ||| ||||| | ||| | | | ||| |||||| |||
Sbjct 38614 AGTAGATGGACAGGTTTTTCAGAGGCGTGATGAGCAGGCCAC-CGTCGATGAAGAAAGGC 38672
Query 916 ACGCGCACGGCC-GGCAGATTGCCGATGCGCTTCTGGCTCACGATCAGATCGGCCGCGAG 974
||| ||||||| ||| | ||| | |||| |||||||||| | || |||||||| ||
Sbjct 38673 ACGGTCACGGCCTGGCTGCC-GCCCAGGCGCATCTGGCTCACCACCATGTCGGCCGCCAG 38731
Query 975 CCGCTCGGTCGGCGCCTGCGTCGC-GTTGACGATCGGGAAATACTTGTCGTGCAGCAGCT 1033
|||||| | ||| | ||| | ||| ||||| ||||| |||||| |||| ||| |
Sbjct 38732 GCGCTCGCTGGGCAGAT-CGTTGTTGTTCACGATGGGGAACAGCTTGTCATGCATCAGGT 38790
Query 1034 CGCGGCCGCAGATCGCGACGAGGCCCGTGT-CTTCCTGGAACCACGGGTCGATCATCGAC 1092
| || |||||| ||| || ||| || ||| | || ||||| || |||| |||
Sbjct 38791 CATCGCTGCAGATGGCGCGCAGATCCGGGTGCTTGC-GGTGCCACGAATCAATCAGCGAG 38849
Query 1093 GACACGATATCCATCACGAGCGCGTCGAGGTTCTCGTAATCGCCCGCCTTGCCGACGAGC 1152
| | |||||| | || ||||||||||||| ||| ||||| || || ||
Sbjct 38850 TGCTTGGCATCCATGGCCAGGGCGTCGAGGTTCTTGTAGTCGCCACCCGGTCCCACAGTG 38909
Query 1153 ACCTTGCCGGCCTGCTTCGCGCCTTCGTGCAGCACGCGCTGTGCCGCGCGCTCGCGGTAC 1212
|||||||| ||| ||| ||| || ||||||| | ||| |||||
Sbjct 38910 ACCTTGCCCGCCACCTT---GCCAGAAGACATGACGCGCTCGGGCGCCTCTTCGCGCAGG 38966
Query 1213 TGTTGCAGCCAACCGATGTTCACGTCCTGCAACAGCGGGTTTGCCTGACGGTCAG--TCG 1270
| |||||||| || || ||| ||||||| || ||||| || ||||| | |
Sbjct 38967 CGCTGCAGCCACCCCTTGGTCAGATCCTGCAGCAAAGGGTTGGC-----GGTCAAGTTGG 39021
Query 1271 TCGCGGCC---GCCTTCACGCCGTTCCAGCCGATCATGATGCGATCGAGCGCCCCCTGGT 1327
| | |||| || | | ||||||||| || | ||||||||| || ||||| | |
Sbjct 39022 TGGTGGCCTTGGCTTCCTTGCCGTTCCATCCCACCATGATGCGGTCCAGCGCATTGCGTT 39081
Query 1328 TGAGGATCACGTCGCGGATGCGCTGTTGGAAGTCGGCGAACTTCGCCCATGCGTCGAGCT 1387
| |||| ||||| ||| ||| || ||||||| ||| | |||||| || ||||||
Sbjct 39082 CGGCAATCAGGTCGCTGATACGCACCTGAAAGTCGGGGAAGTGCGCCCAGGCATCGAGCA 39141
Query 1388 T-GCGATACGGAATCGCCGTGTCGTAGTCGGTCTTCTCGCAGCGGTAGCGGTTGCTGTCG 1446
| ||| ||| || || ||| | || ||| | |||| |||| | | | ||||
Sbjct 39142 TCGCG-TACTTGATGTGGGTATCGGAATCAATCTGCAGGCAGTGGTATCCGGTCTTGTCC 39200
Query 1447 AGCGCCGTCGGGTCGATCGGTTGGCGCGCGGCCTTC----GTCGTGTCGGTGCGGCTCGC 1502
| ||||| || | | | ||| | |||| || || ||||| |||||||| ||
Sbjct 39201 TTGCCTGTCGGATCTTTGGTCTTGCGGG-GGCCGTCAGCGGTGGTGTCCGTGCGGCTGGC 39259
Query 1503 GATCGGGCCGGACACGGACAGGCCGAGCTTTTCGCCTTCGAGCT-CGGT--CACGGGCAG 1559
|| || | || || | ||| || | ||||||||| | ||| ||| |||||||||
Sbjct 39260 GACGGGACGGGTCAGGCTCAGACCCACCTTTTCGCCCT---GCTGCGGCACCACGGGCAG 39316
Query 1560 CACGTTGATGCGCTTGAGAAACTCGCTCGATTCCTGCATCTTCGTTTCGAGCCGCTGTTG 1619
| ||||||| ||| || || |||||||||||||| ||||| ||| ||| ||
Sbjct 39317 GATGTTGATGGACTTCAGGAATGAACTCGATTCCTGCATGCGGGTTTCCAGCTTCTGCTG 39376
Query 1620 CACGGTCGGC 1629
||||||||||
Sbjct 39377 CACGGTCGGC 39386
Score = 176 bits (194), Expect = 1e-39
Identities = 566/864 (66%), Gaps = 32/864 (4%)
Strand=Plus/Plus
Query 23326 CCACGCGCGCCGGGAAATCGGCGAGGAAGCGGTCGGTGATGCGCTGGCGCAGCACCAGAT 23385
|||||||| | ||| ||| ||| |||||||||||||||||||||| | |||| |
Sbjct 24766 CCACGCGCATGGCGAAGTCGCCGAAATAGCGGTCGGTGATGCGCTGGCGGAATCCCAGGT 24825
Query 23386 TTTCGAGAGGCGGAACCGGCGTGTAGTCATAATCGATGTACGCCTTGCCGGACGCGAGAA 23445
||| || ||||| || ||||||||||| || || | | |||||||| | |||
Sbjct 24826 CTTCCAGCGGCGGCACGGGCGTGTAGTCGTAGTCAAGCACCAGCTTGCCGGCCTTGAGCG 24885
Query 23446 TGTCGGCCGTGTTCGGCTCCGGATCGATCCACGCGCTACCGCCGATCAGGTAGCCGTTCG 23505
|| | ||||| ||| | || | ||| |||| ||| ||| | |||||| |
Sbjct 24886 CTTCTGTGGTGTTGACCTCGGCGTCAAACCAGGCGCGGCCGTCGAGGATGTAGCC---CA 24942
Query 23506 CGACCT---GCTGCCGAAACCAGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACG 23562
| ||| | | || ||| | | ||||||| |||||||||||| | | | |
Sbjct 24943 GGGCCTTGAGTTCGCGGAACTTGGCATTGATGCCTTCCACGATGTCTTTCACCATGCTGG 25002
Query 23563 GATTCAGCGGGCCGTCGACGACGGGCATCTGCGCTTCGGCGATCGAATCGGCGGCCACCT 23622
| | || || |||||| | || | || | || || || | ||||| |||||
Sbjct 25003 GGTGCATGGGCTTGTCGACAAAGGCGAAATGACCCTCTGCCATGGTGTCGGCCAGCACCT 25062
Query 23623 GAGCGGTGCGCGTGTAGTTCTCGAACGCGAAC--TTCGGATCGTCCGAGCACGTGCGCTC 23680
| || |||||| | | |||||| |||| |||| ||| ||| ||||||
Sbjct 25063 GGGCAGTGCGCACGCTGGACTCGAATCGGAACAGTTCG--TCGGTGCTGCAGGTGCGCGA 25120
Query 23681 GCCCCAGAACCGGAAGCCGTTGCGGTTCACGAGCGTCGTCACTTCGTGCTCGTTCAGGTA 23740
|||||||| || |||| | | ||| | |||||| || || | | ||| || ||
Sbjct 25121 TCCCCAGAAGCGATAGCCCTGGTAGTTGATGAGCGTGGTGACGTTGCCCTCATTGAGCAG 25180
Query 23741 GCCCGCATCGGTCGCCGGGTCCTGCAAATCCCACGACACGTCGGCGCTGATGCCGGACAC 23800
| || || ||| ||| | |||| || | |||||| ||||||||| |
Sbjct 25181 GTTTGCGTCCGTCTCCGAGCTTTGCAGGTCGAAATGCACGTCCTTGCTGATGCCCACCGG 25240
Query 23801 GCCGTTCA-CGACGACATTCGAAATCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCG 23859
||| || | || | || || || | ||||||||||| || || |||||| |
Sbjct 25241 GCCATTTAGCGGC-ACGTTTGACAGGGTCTTGTGCCAACCTTGCTCCACGTCGATGCGGG 25299
Query 23860 CGCGCAAGC------CGGCGGCGATCGCCGGCGCCGGGATGACGGCCGTCGAGTTCGTCG 23913
|||||| | || ||| | |||||||| ||| |||| | ||| | ||
Sbjct 25300 CGCGCAGCCCCATCGCGTAGGCCACAGCCGGCGC---ATTGATGGCCTT---GTTTGCCG 25353
Query 23914 TGTCGTCCCAGCCGAGCCAGTCCGGCCAGATCACCATGATTTCGCGTTGGCCG-AACTGC 23972
|| || |||| | | || ||||||||||||||| ||||||| |||| |||| |
Sbjct 25354 TGGTGTTCCAGGCTTTGAAATCGGGCCAGATCACCATGGTTTCGCGGGCGCCGAAACTCC 25413
Query 23973 CTGCGGTACGCGGCGGCTT--CTTCCTTCGTCTTGCAGCCGGACGCCGACACATAGGCCA 24030
|||| ||||| ||| | || | ||||| | |||| | || ||| |||||||
Sbjct 25414 CTGC-ATACGCCAGGGCCTCGCTCACATCGTC--GGCGCCGTGCCCCTGCACGTAGGCCA 25470
Query 24031 TCGCGCGCAGC-GACTGCGCGGTCGCCGCGAGCGCGGCCGCGACCGGCTGCGTATCGAGG 24089
| ||||||||| | || |||| |||| ||| || |||| || |||| || || ||
Sbjct 25471 TGGCGCGCAGCTGGATG-GCGGCGGCCGTGAGGGCATCCGCCACGGGCTTGGTGTCCAGC 25529
Query 24090 CCGGGCGCGGCGAGAATGCGCGGCTTCACGCCGAGCGCACCCTGCGCGGCGAGCAGCGCC 24149
||||| ||| | || ||||| || |||||||| ||| |||||||| || |||||||
Sbjct 25530 CCGGGGGCGCCCAGGATGCGGGGTTTCACGCCCAGCTGCTGCTGCGCGGTGATCAGCGCC 25589
Query 24150 TTGATGCCCGTGTACTTGCCGTCC 24173
| ||||| | | ||||||| ||
Sbjct 25590 TGAATGCCGGAGCGCTTGCCGGCC 25613
Score = 138 bits (152), Expect = 3e-28
Identities = 166/226 (73%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 5228 GCGGGAAGAAGGACGGCATCCAGCTCATTCCCGTGTCCGAGGTCGCCGCGAAGGACGAGT 5287
|||| || || | | |||||| || | ||| | ||||| || || ||||| || |
Sbjct 43102 GCGGCAAAGAGAAAGCCATCCAACTGCTGCCCATCGGCGAGGCGGCGGCCAAGGATGAAT 43161
Query 5288 TCTTCAACATCAAGAACGTGACGCGCGACGATCTGCTCGCCGCGCACCGCGTGCCGCCGC 5347
| ||||||||||||||||||| ||||| || | | ||||| ||||||||||| ||||
Sbjct 43162 TTTTCAACATCAAGAACGTGAGCCGCGATGACCAATTGGCCGCCCACCGCGTGCCTCCGC 43221
Query 5348 AGTTGCTCGGCATCGTGCCGAGCAATTCGGGCGGGTTCGGCACGCCGGATACCGCCGCGC 5407
|| | | ||| | |||||| |||| | || || |||||| || | ||| || |
Sbjct 43222 AGCTCATGGGCGTGGTGCCGGCCAATGCAGGTGGCTTCGGCGATGTGGTCAACGCTGCAC 43281
Query 5408 GTGTGTTCGGGCGCAACGAAATCAGGCCGCTACAGGCGCGCTTCGC 5453
| ||||||| ||||||||||||| ||| || ||| ||||||||||
Sbjct 43282 GGGTGTTCGCGCGCAACGAAATCCAGCCCCTGCAGACGCGCTTCGC 43327
Score = 102 bits (112), Expect = 2e-17
Identities = 140/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 2132 GCTTCGCGGCGAATTGCAGCGCTTCGGTGCCGAGGCTCGCCGGGTCGTCGGTCGCCGCGA 2191
||| |||||| || |||||| |||||||| ||||| ||||| |||||| | || |
Sbjct 39967 GCTGCGCGGCAAACTGCAGCATCTCGGTGCCCAGGCTGGCCGGCGTGTCGGTGACGGCCA 40026
Query 2192 GCCCAACGAGATACGCCTCGCCGATGTCGGCGAAGTCGGGGTTGATCTCGATCGACGTGA 2251
| || || | ||| ||||| ||| | | ||||| ||||||| | |||||| || ||
Sbjct 40027 GGCCGACCATATAGGCCTCTCCGGAGCCCGCGAAATCGGGGTCCACCTCGATGGAGGTAT 40086
Query 2252 AGAGCTTCTGGCGCTTCTTCGACAGCGCGACGAGCTCGTCGGTCGGATCGATCTGCGCAT 2311
|||||||||||| ||||| | |||| || ||| || | ||||||||||
Sbjct 40087 AGAGCTTCTGGCCCTTCTGGTTGATGGCGATCAGAGAGTCCAGGGGCTGAATCTGCGCAT 40146
Query 2312 ACAGCGCCATCTTCCC 2327
||||||| | ||| ||
Sbjct 40147 ACAGCGCGAGCTTGCC 40162
>seq5906
Length=1255
Score = 89.7 bits (98), Expect = 1e-13
Identities = 224/334 (67%), Gaps = 10/334 (3%)
Strand=Plus/Plus
Query 24060 AGCGCGGCCGCGACCGGCTGCGTATCGAGGCCGGGCGCGGCGAGAATGCGCGGCTTCACG 24119
||||| | || |||| |||||| || |||||||| | | |||| || ||||| ||
Sbjct 293 AGCGCCGTCGTCACCGCCTGCGTTTCAAGGCCGGGGGTGACGAGGATCTTTGGCTTGACC 352
Query 24120 CCGAGCGCACCCTGCGCGGCGAGCAGCGCCTTGATGCCCGTGTACTTGCCGTCCGGCGTC 24179
|| ||| ||||||| || |||||||||| || || || | | ||||| ||||||
Sbjct 353 CCCAGCTGCGCCTGCGCCGCCAGCAGCGCCTGCATACCTGTCTTTTGGCCGTT-GGCGTC 411
Query 24180 ACG-GTGCCGATGACGTTCGAGGTCGTCTCGTCGGCGTCCTTGCCTTCGGCGACGCGCAC 24238
|| |||||||| || || || || | || || | |||||||| ||||| ||
Sbjct 412 GGTCGTACCGATGACATTGCTGGCGGTTTCCGCCGCATCGTCCCCTTCGGCCACGCGGAC 471
Query 24239 GACGACGGTCAGCGGCTTCGTCTGCTTGCCGATCGCGTCGAGCGTGCGGCGCAGCGTGCC 24298
||||| | | ||| | || | | |||| ||| |||| || |||||||||
Sbjct 472 CACGACAATGATCGGGCGAGCATGATCGGCGATGGCGCGCAGCGACAGGGCCAGCGTGCC 531
Query 24299 TTTCTTGCCGGCCTTGCCGAGCGCGGCGACGACGTTCGTCAGCAGCAC-GGGCGTATTGA 24357
| | | ||||| ||||| |||| | || | || | ||| | ||||| || ||
Sbjct 532 GTCCGTCCCGGCGGCGCCGATGGCGGTTTCAACATCGGTGATGAGCGCCGGGCG-ATCGA 590
Query 24358 GCGGAAACGCGCTCGCG---TCAGCGTCGGCCGC 24388
|||| || | | ||| ||||||||||||||
Sbjct 591 GCGGGAA---GATAGCGGGATCAGCGTCGGCCGC 621
>seq9683
Length=137075
Score = 82.4 bits (90), Expect = 2e-11
Identities = 106/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 8123 GCCACGTGGTCCCGCCCGAGGTGCGCGTAGCGCAGCACCATCTGATAGC-TGGCCCATCC 8181
|||| ||| ||| || | ||||| || || | |||||||| ||| | ||| ||
Sbjct 49437 GCCAAGTGCTCCGGCGCCAGGTGGGCATATTTCTTCACCATCTCC-AGCGTCTTCCAGCC 49495
Query 8182 TCCGAGCTGCTGAAGGATTGGCAGAGGCGTGCCGGCCTGAACGTGCCAGCTCGCCCACGT 8241
||| |||| || |||| ||| |||||||||| || || |||||||||||||| ||
Sbjct 49496 TCCCAGCTCCTTCAGGACGAACAGGGGCGTGCCGGATTGGACATGCCAGCTCGCCCAGGT 49555
Query 8242 GTGCCGCAGATCATGAAAGCGCAA 8265
||||||||| || || ||||| ||
Sbjct 49556 GTGCCGCAGGTCGTGGAAGCGGAA 49579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 114229169243874
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |