Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_009235.2 Length=48674 Score E Sequences producing significant alignments: (Bits) Value seq7304 102 3e-17 >seq7304 Length=19908 Score = 102 bits (112), Expect = 3e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 1160 GACGAGTATCACGAGCACGATACGAACGCGCAGTACGAAACCATGCTCACGGGGATGGGC 1219 || || ||||||||||| | || || || |||||||| || |||| ||||| ||||| Sbjct 13951 GATGAATATCACGAGCATCAAACAAATGCACAGTACGACACTATGCAAACGGGTATGGGG 13892 Query 1220 GCGCGCCGGCAGCCGTTGATGTTCGTCATCACGACGGCGGGCGCCAACATTGAAGGGCCG 1279 ||||| || ||||| |||||||| || || || || | || ||| ||||| || || Sbjct 13891 GCGCGTCGTCAGCCATTGATGTTTGTTATTACAACATCAGGTTTCAATATTGATGGTCCT 13832 Query 1280 TGCTACGACAAGCGCCGGCAGGTGATC--GAAATGCTCGAAGGGACGGTGCCCGACGACG 1337 || ||||| ||| | || || || ||| | || || ||||| || || | Sbjct 13831 TGTCACGACTTGCG--TTTACGTATTCAAGACATGTTGCTTGGTACAGTGCCAGATGATG 13774 Query 1338 AGCTTTTCGGGTGGATCTGGACCATCGACGAAGACGACGATTGGACCGATCC 1389 |||| || || | ||||||||||| || || | || || ||||| ||||| Sbjct 13773 AGCTGTTTGGATATATCTGGACCATTGATGAGGGTGATGAGTGGACAGATCC 13722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155607368438088