Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_009235.2
Length=48674
Score E
Sequences producing significant alignments: (Bits) Value
seq7304 102 3e-17
>seq7304
Length=19908
Score = 102 bits (112), Expect = 3e-17
Identities = 163/232 (70%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 1160 GACGAGTATCACGAGCACGATACGAACGCGCAGTACGAAACCATGCTCACGGGGATGGGC 1219
|| || ||||||||||| | || || || |||||||| || |||| ||||| |||||
Sbjct 13951 GATGAATATCACGAGCATCAAACAAATGCACAGTACGACACTATGCAAACGGGTATGGGG 13892
Query 1220 GCGCGCCGGCAGCCGTTGATGTTCGTCATCACGACGGCGGGCGCCAACATTGAAGGGCCG 1279
||||| || ||||| |||||||| || || || || | || ||| ||||| || ||
Sbjct 13891 GCGCGTCGTCAGCCATTGATGTTTGTTATTACAACATCAGGTTTCAATATTGATGGTCCT 13832
Query 1280 TGCTACGACAAGCGCCGGCAGGTGATC--GAAATGCTCGAAGGGACGGTGCCCGACGACG 1337
|| ||||| ||| | || || || ||| | || || ||||| || || |
Sbjct 13831 TGTCACGACTTGCG--TTTACGTATTCAAGACATGTTGCTTGGTACAGTGCCAGATGATG 13774
Query 1338 AGCTTTTCGGGTGGATCTGGACCATCGACGAAGACGACGATTGGACCGATCC 1389
|||| || || | ||||||||||| || || | || || ||||| |||||
Sbjct 13773 AGCTGTTTGGATATATCTGGACCATTGATGAGGGTGATGAGTGGACAGATCC 13722
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 155607368438088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |