Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_009236.1
Length=36690
Score E
Sequences producing significant alignments: (Bits) Value
seq7272 381 1e-101
seq5906 84.2 5e-12
>seq7272
Length=98981
Score = 381 bits (422), Expect = 1e-101
Identities = 677/975 (69%), Gaps = 22/975 (2%)
Strand=Plus/Plus
Query 2930 GCCCGTCGAGCGCATCGAGGCATCGCTCGAAGTACGCCTGATGGTGTTGATCGCGAAGGA 2989
|||||| ||||| |||||| |||||| ||| | |||||| | | ||| |||||
Sbjct 40776 GCCCGTGGAGCGTGTCGAGGGATCGCTGGAAATGCGCCTGTGCACGCTCATCAACAAGGA 40835
Query 2990 GAAGAAGGACGGCGCGGACTACAAGGAAATCGACCTGCTCGGCCG--CCAAGTCGAGCGG 3047
| |||| | || |||||||||||||||||| ||| || || ||| | |||||
Sbjct 40836 GGGCAAGGGCAACGGCGACTACAAGGAAATCGACGCGCTGGGGCGTGCCATG--GAGCGC 40893
Query 3048 CTCGCGCGCGTGCGCAAGTACGACGAGACGGGGAAGGAATCGGACCTGAACCCGAAGATT 3107
| |||||||||| ||| ||||| ||||| |||||||| ||||| |||| |||
Sbjct 40894 TTGGCGCGCGTGCACAAATACGAGCGCACGGGCCGAGAATCGGATCTGAATCCGACCATT 40953
Query 3108 GCGTCGCGCAACGCCGGCCCGAA-ACGCCGTGCGCCGCGCAACGAAATCAGCGACGAGCA 3166
| |||||| ||||| || || | || | || |||||| | ||| |||| |
Sbjct 40954 GAAAAGCGCAATGCCGGACCTAAGAAGCAGCCCGA-GCGCAATCACTTCACGTCCGAGGA 41012
Query 3167 ---GCACAAGCGCATCATCGAAGCGTTCCGCGATTCGCTGTTCGACTATCAGAAAGTCTG 3223
| ||||| || || | || || | |||||||| ||| |||| || || ||
Sbjct 41013 CGTGGACAAGATCA-CACGG--GCATTTCTGGATTCGCTTTTCAACTACCAAAACACATG 41069
Query 3224 GTATCGGAACGG--CGATCAGCGCACGCGCAACATCCTGAAATCGCGGCAGATCGGTGCG 3281
|| ||| | | | | |||||||||||| ||| || |||||||| |||||||| ||
Sbjct 41070 GTG--GGAGCAGATCCAGCAGCGCACGCGCGCCATTCTCAAATCGCGCCAGATCGGGGCA 41127
Query 3282 ACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCCCTCGACACCGACCGTAATCAAATC 3341
||||||||||||| |||||||| || | || ||||| | || | ||| ||||| ||
Sbjct 41128 ACGTGGTACTTCGGCCGCGAGGCCCTGATTGATGCCCTGAAGACGGGCCGCAATCAGATT 41187
Query 3342 TTCCTGTCGGCGAGCAAGGCTCAGGCGCACGTCTTCAAGCAGTACATCA-CGCAGTTCGC 3400
|| || ||||| ||| || ||||| || || ||| ||||||||||| ||| ||| ||
Sbjct 41188 TTTCTTTCGGCCAGCCGTGCGCAGGCCCATGTTTTCCGGCAGTACATCATCGC-GTTTGC 41246
Query 3401 GCGCGCGGCGGCCGACATCGAGCTCACGGGCGATCCGATCATCTTGCCGAGCGGCGCGAC 3460
| | ||| ||||| | | |||||| || ||| || || | ||||| ||
Sbjct 41247 CAAGGAGCATTGCGATATCGATTTGAAGGGCGACCCCATCGTCCTGAGCAATGGCGCCAC 41306
Query 3461 GCTGTACTTCCTGGGGACGAACGCGCGCACCGCGCAGTCGTACCACGGCAACTTCTACTT 3520
|||||| |||||||| |||| ||| |||||||||||||||||||||||||| |||| ||
Sbjct 41307 GCTGTATTTCCTGGGCACGAGCGCCCGCACCGCGCAGTCGTACCACGGCAATCTCTATTT 41366
Query 3521 CGACGAATACTTTTGGGTTCCGAAGTTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGC 3580
||| |||| ||||||||| || ||| |||||| ||||| ||| ||| |||||
Sbjct 41367 CGATGAATTCTTTTGGGTCAACAACTTCACGGAGCTGTGGAAGGTGGCCAGCGGTATGGC 41426
Query 3581 GATGCACAAGCGCTGGCGCAAGACTTACTTCAGCACGCCGTCCAGCGTCACGCACGAGGC 3640
|| ||||||| ||||||||||| || |||||| |||| | |||| ||||
Sbjct 41427 CATCCACAAGCATTGGCGCAAGACGCTGTTTTCCACGCCCAGCAGCCTGCAGCACCAGGC 41486
Query 3641 GTACGCGTTCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCGCGGGCGAGCGCATCCA 3700
|| ||| | ||||||| || | | ||| |||||| || ||||| |
Sbjct 41487 CTATGCGCTGTGGAGCGCCGAACGCATCAACAAGAAGCGCGCCAAAAAGGACCGCATAGA 41546
Query 3701 GATCGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGACGCGCAGTGGCG 3760
| | ||| |||||| | || | | ||| | |||||||| | |||||
Sbjct 41547 GCTGGACCTGAGCCATTCGCACCTGGCTGGAGGCTTCACCGGCGAGGACAAGATATGGCG 41606
Query 3761 GCAGATCGTGACCGTGCTCGATGCGATGGCGGGCGGCTGCGACCTGTTCGACATCGACGA 3820
|||||| || || ||||| |||||| | ||||||||| | ||||||||| | |||||
Sbjct 41607 GCAGATTGTCACGGTGCTGGATGCGCAGCGCGGCGGCTGCAATCTGTTCGACCTTGACGA 41666
Query 3821 GCTGCGCCGCGAGTACAGCGCCGAGGAATTCGCGAATCTGCTCATGTGCCAGTTCATCGA 3880
|||||| |||||| | |||||||| | || |||||||||||| ||| ||||
Sbjct 41667 ACTGCGCTTCGAGTATTCGGACGAGGAATGGGACAACCTGCTCATGTGCGGGTTTGTCGA 41726
Query 3881 CGA----TTCGCTGT 3891
|| ||||||||
Sbjct 41727 TGACACCTTCGCTGT 41741
Score = 181 bits (200), Expect = 2e-41
Identities = 525/788 (67%), Gaps = 30/788 (4%)
Strand=Plus/Plus
Query 912 AGTAGATCGACAGATTTGACAGCTTCGTGACCATCAGCGCGCGCTTCGG-GAAGAACGGC 970
||||||| ||||| ||| ||| ||||| | ||| | | | ||| |||||| |||
Sbjct 38614 AGTAGATGGACAGGTTTTTCAGAGGCGTGATGAGCAGGCCAC-CGTCGATGAAGAAAGGC 38672
Query 971 ACGCGCACGGCC-GGCAGATTGCCGATGCGCTTCTGGCTCACGATCAGATCGGCCGCGAG 1029
||| ||||||| ||| | ||| | |||| |||||||||| | || |||||||| ||
Sbjct 38673 ACGGTCACGGCCTGGCTGCC-GCCCAGGCGCATCTGGCTCACCACCATGTCGGCCGCCAG 38731
Query 1030 CCGCTCGGTCGGCGCCTGCGTCGC-GTTGACGATCGGGAAATACTTGTCGTGCAGCAGCT 1088
|||||| | ||| | ||| | ||| ||||| ||||| |||||| |||| ||| |
Sbjct 38732 GCGCTCGCTGGGCAGAT-CGTTGTTGTTCACGATGGGGAACAGCTTGTCATGCATCAGGT 38790
Query 1089 CGCGGCCGCAGATCACGACGAGGCCCGTGT-CTTCCTGGAACCACGGGTCGATCATCGAC 1147
| || |||||| || || ||| || ||| | || ||||| || |||| |||
Sbjct 38791 CATCGCTGCAGATGGCGCGCAGATCCGGGTGCTTGC-GGTGCCACGAATCAATCAGCGAG 38849
Query 1148 GACACGATATCCATCACGAGCGCGTCGAGGTTCTCGTAATCGCCCGCCTTGCCGATGAGC 1207
| | |||||| | || ||||||||||||| ||| ||||| || || |
Sbjct 38850 TGCTTGGCATCCATGGCCAGGGCGTCGAGGTTCTTGTAGTCGCCACCCGGTCCCACAGTG 38909
Query 1208 ACCTTGCCGGCCTGCTTCGCGCCTTCGTGCAGCACGCGCTGCGCTGCGCGCTCGCGGTAC 1267
|||||||| ||| ||| ||| || ||||||| | || |||||
Sbjct 38910 ACCTTGCCCGCCACCTT---GCCAGAAGACATGACGCGCTCGGGCGCCTCTTCGCGCAGG 38966
Query 1268 TGTTGCAGCCAGCCGATGTTCACGTCCTGCAACAGCGGGTTTGCCTGACGGTCGGTCGTC 1327
| |||||||| || || ||| ||||||| || ||||| || || ||| ||
Sbjct 38967 CGCTGCAGCCACCCCTTGGTCAGATCCTGCAGCAAAGGGTTGGCGGTCAAGTTGGTGGTG 39026
Query 1328 GC---GGCCGCCTTCACGCCGTTCCAGCCGATCATGATGCGATCGAGCGCCCCCTGGTTG 1384
|| ||| |||| ||||||||| || | ||||||||| || ||||| | | |
Sbjct 39027 GCCTTGGCTTCCTT---GCCGTTCCATCCCACCATGATGCGGTCCAGCGCATTGCGTTCG 39083
Query 1385 AGGATCACGTCGCGGATGCGCTGCTGGAAGTCGGCGAACTTCGCCCACATGTCGAGCTT- 1443
|||| ||||| ||| ||| ||| ||||||| ||| | |||||| |||||| |
Sbjct 39084 GCAATCAGGTCGCTGATACGCACCTGAAAGTCGGGGAAGTGCGCCCAGGCATCGAGCATC 39143
Query 1444 GCGATACGGAATCGCCGTGTCGTAGTCGGTCTTCTCGCAGCGGTAGCGGTTGCTGTCGAG 1503
||| ||| || || ||| | || ||| | |||| |||| | | | ||||
Sbjct 39144 GCG-TACTTGATGTGGGTATCGGAATCAATCTGCAGGCAGTGGTATCCGGTCTTGTCCTT 39202
Query 1504 CGCCGTCGGGTCGATCGGTTGGCGCGCGGCCTTC----GTCGTGTCGGTGCGGCTCGCGA 1559
| ||||| || | | | ||| | |||| || || ||||| |||||||| ||||
Sbjct 39203 GCCTGTCGGATCTTTGGTCTTGCGGG-GGCCGTCAGCGGTGGTGTCCGTGCGGCTGGCGA 39261
Query 1560 TCGGGCCGGACACGGACAGGCCGAGCTTTTCGCCTTCGAGCT-CGGT--CACGGGCAGCA 1616
|| | || || | ||| || | ||||||||| | ||| ||| ||||||||| |
Sbjct 39262 CGGGACGGGTCAGGCTCAGACCCACCTTTTCGCCCT---GCTGCGGCACCACGGGCAGGA 39318
Query 1617 CGTTGATGCGCTTGAGAAACTCGCTCGATTCCTGCATCTTCGTTTCGAGCCGCTGTTGCA 1676
||||||| ||| || || |||||||||||||| ||||| ||| ||| ||||
Sbjct 39319 TGTTGATGGACTTCAGGAATGAACTCGATTCCTGCATGCGGGTTTCCAGCTTCTGCTGCA 39378
Query 1677 CGGTCGGC 1684
||||||||
Sbjct 39379 CGGTCGGC 39386
Score = 167 bits (184), Expect = 5e-37
Identities = 565/864 (65%), Gaps = 32/864 (4%)
Strand=Plus/Plus
Query 24330 CCACGCGCGCCGGGAAATCGGCGAGGAAGCGGTCGGTGATGCGCTGGCGCAGCACCAGAT 24389
|||||||| | ||| ||| ||| |||||||||||||||||||||| | |||| |
Sbjct 24766 CCACGCGCATGGCGAAGTCGCCGAAATAGCGGTCGGTGATGCGCTGGCGGAATCCCAGGT 24825
Query 24390 TTTCGAGAGGCGGAACCGGCGTGTAGTCGTAATCGATGTACGCCTTGCCGGACGCGAGAA 24449
||| || ||||| || |||||||||||||| || | | |||||||| | |||
Sbjct 24826 CTTCCAGCGGCGGCACGGGCGTGTAGTCGTAGTCAAGCACCAGCTTGCCGGCCTTGAGCG 24885
Query 24450 TGTCGGCCGTGTTCGGCTCCGGATCGATCCACGCGCTACCGCCGATCAGGTAGCCGTTCG 24509
|| | ||||| ||| | || | ||| |||| ||| ||| | |||||| |
Sbjct 24886 CTTCTGTGGTGTTGACCTCGGCGTCAAACCAGGCGCGGCCGTCGAGGATGTAGCC---CA 24942
Query 24510 CGACCT---GCTGCCGAAACCAGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACG 24566
| ||| | | || ||| | | ||||||| |||||||||||| | | | |
Sbjct 24943 GGGCCTTGAGTTCGCGGAACTTGGCATTGATGCCTTCCACGATGTCTTTCACCATGCTGG 25002
Query 24567 GATTCAGCGGGCCGTCGACGACGGGCATCTGCGCTTCGGCGATCGAATCGCCGGCCACCT 24626
| | || || |||||| | || | || | || || || | ||| | |||||
Sbjct 25003 GGTGCATGGGCTTGTCGACAAAGGCGAAATGACCCTCTGCCATGGTGTCGGCCAGCACCT 25062
Query 24627 GAGCGGTGCGCGTGTAGTTCTCGAACGCGAAC--TTCGGATCGTCCGAGCACGTGCGCTC 24684
| || |||||| | | |||||| |||| |||| ||| ||| ||||||
Sbjct 25063 GGGCAGTGCGCACGCTGGACTCGAATCGGAACAGTTCG--TCGGTGCTGCAGGTGCGCGA 25120
Query 24685 GCCCCAGAACCGGAAGCCGTTGCGGTTCACGAGCGTCGTCACTTCGTGCTCGTTCAGGTA 24744
|||||||| || |||| | | ||| | |||||| || || | | ||| || ||
Sbjct 25121 TCCCCAGAAGCGATAGCCCTGGTAGTTGATGAGCGTGGTGACGTTGCCCTCATTGAGCAG 25180
Query 24745 GCCCGCATCGGTCGCCGGGTCCTGCAAATCCCACGACACGTCGGCGCTGATGCCGGACAC 24804
| || || ||| ||| | |||| || | |||||| ||||||||| |
Sbjct 25181 GTTTGCGTCCGTCTCCGAGCTTTGCAGGTCGAAATGCACGTCCTTGCTGATGCCCACCGG 25240
Query 24805 GCCGTTCA-CGACGACATTCGAAATCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCG 24863
||| || | || | || || || | ||||||||||| || || |||||| |
Sbjct 25241 GCCATTTAGCGGC-ACGTTTGACAGGGTCTTGTGCCAACCTTGCTCCACGTCGATGCGGG 25299
Query 24864 CGCGCAAGCCG---GCG---GCGATCGCCGGCGCCGGGATGACAGCCGTCGAGTTCGTCG 24917
|||||| || ||| || | |||||||| |||| ||| | ||| | ||
Sbjct 25300 CGCGCAGCCCCATCGCGTAGGCCACAGCCGGCGCATTGATG---GCCTT---GTTTGCCG 25353
Query 24918 TGTCGTCCCAGCCGAGCCAGTCCGGCCAGATCACCATGATTTCGCGTTGGCCG-AACTGC 24976
|| || |||| | | || ||||||||||||||| ||||||| |||| |||| |
Sbjct 25354 TGGTGTTCCAGGCTTTGAAATCGGGCCAGATCACCATGGTTTCGCGGGCGCCGAAACTCC 25413
Query 24977 TTGCGGTACGCGGCGGCTT--CTTCCTTCGTTTTGCAGCCGGACGCCGACACATAGGCCA 25034
||| ||||| ||| | || | ||| | | |||| | || ||| |||||||
Sbjct 25414 CTGC-ATACGCCAGGGCCTCGCTCACATCG--TCGGCGCCGTGCCCCTGCACGTAGGCCA 25470
Query 25035 TCGCGCGCAGC-GACTGCGCGGTCGCCGCGAGCGCGGCCGCCACCGGCTGCGTATCGAGG 25093
| ||||||||| | || |||| |||| ||| || ||||||| |||| || || ||
Sbjct 25471 TGGCGCGCAGCTGGATG-GCGGCGGCCGTGAGGGCATCCGCCACGGGCTTGGTGTCCAGC 25529
Query 25094 CCGGGCGCCGCGAGAATGCGCGGCTTCACGCCGAGCGCACCCTGCGCGGCGAGCAGCGCC 25153
||||| || | || ||||| || |||||||| ||| |||||||| || |||||||
Sbjct 25530 CCGGGGGCGCCCAGGATGCGGGGTTTCACGCCCAGCTGCTGCTGCGCGGTGATCAGCGCC 25589
Query 25154 TTGATGCCCGTGTACTTGCCGTCC 25177
| ||||| | | ||||||| ||
Sbjct 25590 TGAATGCCGGAGCGCTTGCCGGCC 25613
Score = 150 bits (166), Expect = 4e-32
Identities = 169/226 (75%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 5283 GCGGGAAGAAGGACGGCATCCAGCTCATTCCCGTGTCCGAGGTCGCCGCGAAGGACGAGT 5342
|||| || || | | |||||| || | ||| | ||||| || || ||||| || |
Sbjct 43102 GCGGCAAAGAGAAAGCCATCCAACTGCTGCCCATCGGCGAGGCGGCGGCCAAGGATGAAT 43161
Query 5343 TCTTCAACATCAAGAACGTGACGCGCGATGACCTGCTCGCCGCACACCGCGTGCCGCCGC 5402
| ||||||||||||||||||| |||||||||| | ||||| ||||||||||| ||||
Sbjct 43162 TTTTCAACATCAAGAACGTGAGCCGCGATGACCAATTGGCCGCCCACCGCGTGCCTCCGC 43221
Query 5403 AGTTGCTCGGCATCGTGCCGAGCAATTCGGGCGGGTTCGGCACGCCGGATACCGCTGCAC 5462
|| | | ||| | |||||| |||| | || || |||||| || | ||||||||
Sbjct 43222 AGCTCATGGGCGTGGTGCCGGCCAATGCAGGTGGCTTCGGCGATGTGGTCAACGCTGCAC 43281
Query 5463 GCGTGTTCGGGCGCAACGAAATCAGGCCGCTACAGGCACGCTTCGC 5508
| ||||||| ||||||||||||| ||| || ||| | ||||||||
Sbjct 43282 GGGTGTTCGCGCGCAACGAAATCCAGCCCCTGCAGACGCGCTTCGC 43327
Score = 102 bits (112), Expect = 2e-17
Identities = 140/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 2187 GCTTCGCGGCGAATTGCAGCGCTTCGGTGCCGAGGCTCGCCGGGTCGTCGGTCGCCGCGA 2246
||| |||||| || |||||| |||||||| ||||| ||||| |||||| | || |
Sbjct 39967 GCTGCGCGGCAAACTGCAGCATCTCGGTGCCCAGGCTGGCCGGCGTGTCGGTGACGGCCA 40026
Query 2247 GCCCGACGAGATACGCCTCGCCGATGTCGGCGAAGTCGGGGTTGATTTCGATCGACGTGA 2306
| ||||| | ||| ||||| ||| | | ||||| ||||||| | ||||| || ||
Sbjct 40027 GGCCGACCATATAGGCCTCTCCGGAGCCCGCGAAATCGGGGTCCACCTCGATGGAGGTAT 40086
Query 2307 AGAGCTTCTGGCGCTTCTTCGACAGCGCGACGAGCTCGTCGGTCGGATCGATCTGCGCAT 2366
|||||||||||| ||||| | |||| || ||| || | ||||||||||
Sbjct 40087 AGAGCTTCTGGCCCTTCTGGTTGATGGCGATCAGAGAGTCCAGGGGCTGAATCTGCGCAT 40146
Query 2367 ACAGCGCCATCTTCCC 2382
||||||| | ||| ||
Sbjct 40147 ACAGCGCGAGCTTGCC 40162
>seq5906
Length=1255
Score = 84.2 bits (92), Expect = 5e-12
Identities = 223/334 (67%), Gaps = 10/334 (3%)
Strand=Plus/Plus
Query 25064 AGCGCGGCCGCCACCGGCTGCGTATCGAGGCCGGGCGCCGCGAGAATGCGCGGCTTCACG 25123
||||| | || ||||| |||||| || |||||||| | |||| || ||||| ||
Sbjct 293 AGCGCCGTCGTCACCGCCTGCGTTTCAAGGCCGGGGGTGACGAGGATCTTTGGCTTGACC 352
Query 25124 CCGAGCGCACCCTGCGCGGCGAGCAGCGCCTTGATGCCCGTGTACTTGCCGTCCGGCGTC 25183
|| ||| ||||||| || |||||||||| || || || | | ||||| ||||||
Sbjct 353 CCCAGCTGCGCCTGCGCCGCCAGCAGCGCCTGCATACCTGTCTTTTGGCCGTT-GGCGTC 411
Query 25184 ACG-GTGCCGATGACGTTCGAGGTCGTCTCGTCGGCGTCCTTGCCTTCGGCGACGCGCAC 25242
|| |||||||| || || || || | || || | |||||||| ||||| ||
Sbjct 412 GGTCGTACCGATGACATTGCTGGCGGTTTCCGCCGCATCGTCCCCTTCGGCCACGCGGAC 471
Query 25243 GACGACGGTCAGCGGCTTCGTCTGCTTGCCGATCGCGTCGAGCGTGCGGCGCAGCGTGCC 25302
||||| | | ||| | || | | |||| ||| |||| || |||||||||
Sbjct 472 CACGACAATGATCGGGCGAGCATGATCGGCGATGGCGCGCAGCGACAGGGCCAGCGTGCC 531
Query 25303 TTTCTTGCCGGCCTTGCCGAGCGCCGCGACGACGTTCGTCAGCAGCAC-GGGCGTATTGA 25361
| | | ||||| ||||| || | | || | || | ||| | ||||| || ||
Sbjct 532 GTCCGTCCCGGCGGCGCCGATGGCGGTTTCAACATCGGTGATGAGCGCCGGGCG-ATCGA 590
Query 25362 GCGGAAACGCGCTCGCG---TCAGCGTCGGCCGC 25392
|||| || | | ||| ||||||||||||||
Sbjct 591 GCGGGAA---GATAGCGGGATCAGCGTCGGCCGC 621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 117265426186216
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