Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq7272 381 1e-101 seq5906 84.2 5e-12 >seq7272 Length=98981 Score = 381 bits (422), Expect = 1e-101 Identities = 677/975 (69%), Gaps = 22/975 (2%) Strand=Plus/Plus Query 2930 GCCCGTCGAGCGCATCGAGGCATCGCTCGAAGTACGCCTGATGGTGTTGATCGCGAAGGA 2989 |||||| ||||| |||||| |||||| ||| | |||||| | | ||| ||||| Sbjct 40776 GCCCGTGGAGCGTGTCGAGGGATCGCTGGAAATGCGCCTGTGCACGCTCATCAACAAGGA 40835 Query 2990 GAAGAAGGACGGCGCGGACTACAAGGAAATCGACCTGCTCGGCCG--CCAAGTCGAGCGG 3047 | |||| | || |||||||||||||||||| ||| || || ||| | ||||| Sbjct 40836 GGGCAAGGGCAACGGCGACTACAAGGAAATCGACGCGCTGGGGCGTGCCATG--GAGCGC 40893 Query 3048 CTCGCGCGCGTGCGCAAGTACGACGAGACGGGGAAGGAATCGGACCTGAACCCGAAGATT 3107 | |||||||||| ||| ||||| ||||| |||||||| ||||| |||| ||| Sbjct 40894 TTGGCGCGCGTGCACAAATACGAGCGCACGGGCCGAGAATCGGATCTGAATCCGACCATT 40953 Query 3108 GCGTCGCGCAACGCCGGCCCGAA-ACGCCGTGCGCCGCGCAACGAAATCAGCGACGAGCA 3166 | |||||| ||||| || || | || | || |||||| | ||| |||| | Sbjct 40954 GAAAAGCGCAATGCCGGACCTAAGAAGCAGCCCGA-GCGCAATCACTTCACGTCCGAGGA 41012 Query 3167 ---GCACAAGCGCATCATCGAAGCGTTCCGCGATTCGCTGTTCGACTATCAGAAAGTCTG 3223 | ||||| || || | || || | |||||||| ||| |||| || || || Sbjct 41013 CGTGGACAAGATCA-CACGG--GCATTTCTGGATTCGCTTTTCAACTACCAAAACACATG 41069 Query 3224 GTATCGGAACGG--CGATCAGCGCACGCGCAACATCCTGAAATCGCGGCAGATCGGTGCG 3281 || ||| | | | | |||||||||||| ||| || |||||||| |||||||| || Sbjct 41070 GTG--GGAGCAGATCCAGCAGCGCACGCGCGCCATTCTCAAATCGCGCCAGATCGGGGCA 41127 Query 3282 ACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCCCTCGACACCGACCGTAATCAAATC 3341 ||||||||||||| |||||||| || | || ||||| | || | ||| ||||| || Sbjct 41128 ACGTGGTACTTCGGCCGCGAGGCCCTGATTGATGCCCTGAAGACGGGCCGCAATCAGATT 41187 Query 3342 TTCCTGTCGGCGAGCAAGGCTCAGGCGCACGTCTTCAAGCAGTACATCA-CGCAGTTCGC 3400 || || ||||| ||| || ||||| || || ||| ||||||||||| ||| ||| || Sbjct 41188 TTTCTTTCGGCCAGCCGTGCGCAGGCCCATGTTTTCCGGCAGTACATCATCGC-GTTTGC 41246 Query 3401 GCGCGCGGCGGCCGACATCGAGCTCACGGGCGATCCGATCATCTTGCCGAGCGGCGCGAC 3460 | | ||| ||||| | | |||||| || ||| || || | ||||| || Sbjct 41247 CAAGGAGCATTGCGATATCGATTTGAAGGGCGACCCCATCGTCCTGAGCAATGGCGCCAC 41306 Query 3461 GCTGTACTTCCTGGGGACGAACGCGCGCACCGCGCAGTCGTACCACGGCAACTTCTACTT 3520 |||||| |||||||| |||| ||| |||||||||||||||||||||||||| |||| || Sbjct 41307 GCTGTATTTCCTGGGCACGAGCGCCCGCACCGCGCAGTCGTACCACGGCAATCTCTATTT 41366 Query 3521 CGACGAATACTTTTGGGTTCCGAAGTTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGC 3580 ||| |||| ||||||||| || ||| |||||| ||||| ||| ||| ||||| Sbjct 41367 CGATGAATTCTTTTGGGTCAACAACTTCACGGAGCTGTGGAAGGTGGCCAGCGGTATGGC 41426 Query 3581 GATGCACAAGCGCTGGCGCAAGACTTACTTCAGCACGCCGTCCAGCGTCACGCACGAGGC 3640 || ||||||| ||||||||||| || |||||| |||| | |||| |||| Sbjct 41427 CATCCACAAGCATTGGCGCAAGACGCTGTTTTCCACGCCCAGCAGCCTGCAGCACCAGGC 41486 Query 3641 GTACGCGTTCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCGCGGGCGAGCGCATCCA 3700 || ||| | ||||||| || | | ||| |||||| || ||||| | Sbjct 41487 CTATGCGCTGTGGAGCGCCGAACGCATCAACAAGAAGCGCGCCAAAAAGGACCGCATAGA 41546 Query 3701 GATCGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGACGCGCAGTGGCG 3760 | | ||| |||||| | || | | ||| | |||||||| | ||||| Sbjct 41547 GCTGGACCTGAGCCATTCGCACCTGGCTGGAGGCTTCACCGGCGAGGACAAGATATGGCG 41606 Query 3761 GCAGATCGTGACCGTGCTCGATGCGATGGCGGGCGGCTGCGACCTGTTCGACATCGACGA 3820 |||||| || || ||||| |||||| | ||||||||| | ||||||||| | ||||| Sbjct 41607 GCAGATTGTCACGGTGCTGGATGCGCAGCGCGGCGGCTGCAATCTGTTCGACCTTGACGA 41666 Query 3821 GCTGCGCCGCGAGTACAGCGCCGAGGAATTCGCGAATCTGCTCATGTGCCAGTTCATCGA 3880 |||||| |||||| | |||||||| | || |||||||||||| ||| |||| Sbjct 41667 ACTGCGCTTCGAGTATTCGGACGAGGAATGGGACAACCTGCTCATGTGCGGGTTTGTCGA 41726 Query 3881 CGA----TTCGCTGT 3891 || |||||||| Sbjct 41727 TGACACCTTCGCTGT 41741 Score = 181 bits (200), Expect = 2e-41 Identities = 525/788 (67%), Gaps = 30/788 (4%) Strand=Plus/Plus Query 912 AGTAGATCGACAGATTTGACAGCTTCGTGACCATCAGCGCGCGCTTCGG-GAAGAACGGC 970 ||||||| ||||| ||| ||| ||||| | ||| | | | ||| |||||| ||| Sbjct 38614 AGTAGATGGACAGGTTTTTCAGAGGCGTGATGAGCAGGCCAC-CGTCGATGAAGAAAGGC 38672 Query 971 ACGCGCACGGCC-GGCAGATTGCCGATGCGCTTCTGGCTCACGATCAGATCGGCCGCGAG 1029 ||| ||||||| ||| | ||| | |||| |||||||||| | || |||||||| || Sbjct 38673 ACGGTCACGGCCTGGCTGCC-GCCCAGGCGCATCTGGCTCACCACCATGTCGGCCGCCAG 38731 Query 1030 CCGCTCGGTCGGCGCCTGCGTCGC-GTTGACGATCGGGAAATACTTGTCGTGCAGCAGCT 1088 |||||| | ||| | ||| | ||| ||||| ||||| |||||| |||| ||| | Sbjct 38732 GCGCTCGCTGGGCAGAT-CGTTGTTGTTCACGATGGGGAACAGCTTGTCATGCATCAGGT 38790 Query 1089 CGCGGCCGCAGATCACGACGAGGCCCGTGT-CTTCCTGGAACCACGGGTCGATCATCGAC 1147 | || |||||| || || ||| || ||| | || ||||| || |||| ||| Sbjct 38791 CATCGCTGCAGATGGCGCGCAGATCCGGGTGCTTGC-GGTGCCACGAATCAATCAGCGAG 38849 Query 1148 GACACGATATCCATCACGAGCGCGTCGAGGTTCTCGTAATCGCCCGCCTTGCCGATGAGC 1207 | | |||||| | || ||||||||||||| ||| ||||| || || | Sbjct 38850 TGCTTGGCATCCATGGCCAGGGCGTCGAGGTTCTTGTAGTCGCCACCCGGTCCCACAGTG 38909 Query 1208 ACCTTGCCGGCCTGCTTCGCGCCTTCGTGCAGCACGCGCTGCGCTGCGCGCTCGCGGTAC 1267 |||||||| ||| ||| ||| || ||||||| | || ||||| Sbjct 38910 ACCTTGCCCGCCACCTT---GCCAGAAGACATGACGCGCTCGGGCGCCTCTTCGCGCAGG 38966 Query 1268 TGTTGCAGCCAGCCGATGTTCACGTCCTGCAACAGCGGGTTTGCCTGACGGTCGGTCGTC 1327 | |||||||| || || ||| ||||||| || ||||| || || ||| || Sbjct 38967 CGCTGCAGCCACCCCTTGGTCAGATCCTGCAGCAAAGGGTTGGCGGTCAAGTTGGTGGTG 39026 Query 1328 GC---GGCCGCCTTCACGCCGTTCCAGCCGATCATGATGCGATCGAGCGCCCCCTGGTTG 1384 || ||| |||| ||||||||| || | ||||||||| || ||||| | | | Sbjct 39027 GCCTTGGCTTCCTT---GCCGTTCCATCCCACCATGATGCGGTCCAGCGCATTGCGTTCG 39083 Query 1385 AGGATCACGTCGCGGATGCGCTGCTGGAAGTCGGCGAACTTCGCCCACATGTCGAGCTT- 1443 |||| ||||| ||| ||| ||| ||||||| ||| | |||||| |||||| | Sbjct 39084 GCAATCAGGTCGCTGATACGCACCTGAAAGTCGGGGAAGTGCGCCCAGGCATCGAGCATC 39143 Query 1444 GCGATACGGAATCGCCGTGTCGTAGTCGGTCTTCTCGCAGCGGTAGCGGTTGCTGTCGAG 1503 ||| ||| || || ||| | || ||| | |||| |||| | | | |||| Sbjct 39144 GCG-TACTTGATGTGGGTATCGGAATCAATCTGCAGGCAGTGGTATCCGGTCTTGTCCTT 39202 Query 1504 CGCCGTCGGGTCGATCGGTTGGCGCGCGGCCTTC----GTCGTGTCGGTGCGGCTCGCGA 1559 | ||||| || | | | ||| | |||| || || ||||| |||||||| |||| Sbjct 39203 GCCTGTCGGATCTTTGGTCTTGCGGG-GGCCGTCAGCGGTGGTGTCCGTGCGGCTGGCGA 39261 Query 1560 TCGGGCCGGACACGGACAGGCCGAGCTTTTCGCCTTCGAGCT-CGGT--CACGGGCAGCA 1616 || | || || | ||| || | ||||||||| | ||| ||| ||||||||| | Sbjct 39262 CGGGACGGGTCAGGCTCAGACCCACCTTTTCGCCCT---GCTGCGGCACCACGGGCAGGA 39318 Query 1617 CGTTGATGCGCTTGAGAAACTCGCTCGATTCCTGCATCTTCGTTTCGAGCCGCTGTTGCA 1676 ||||||| ||| || || |||||||||||||| ||||| ||| ||| |||| Sbjct 39319 TGTTGATGGACTTCAGGAATGAACTCGATTCCTGCATGCGGGTTTCCAGCTTCTGCTGCA 39378 Query 1677 CGGTCGGC 1684 |||||||| Sbjct 39379 CGGTCGGC 39386 Score = 167 bits (184), Expect = 5e-37 Identities = 565/864 (65%), Gaps = 32/864 (4%) Strand=Plus/Plus Query 24330 CCACGCGCGCCGGGAAATCGGCGAGGAAGCGGTCGGTGATGCGCTGGCGCAGCACCAGAT 24389 |||||||| | ||| ||| ||| |||||||||||||||||||||| | |||| | Sbjct 24766 CCACGCGCATGGCGAAGTCGCCGAAATAGCGGTCGGTGATGCGCTGGCGGAATCCCAGGT 24825 Query 24390 TTTCGAGAGGCGGAACCGGCGTGTAGTCGTAATCGATGTACGCCTTGCCGGACGCGAGAA 24449 ||| || ||||| || |||||||||||||| || | | |||||||| | ||| Sbjct 24826 CTTCCAGCGGCGGCACGGGCGTGTAGTCGTAGTCAAGCACCAGCTTGCCGGCCTTGAGCG 24885 Query 24450 TGTCGGCCGTGTTCGGCTCCGGATCGATCCACGCGCTACCGCCGATCAGGTAGCCGTTCG 24509 || | ||||| ||| | || | ||| |||| ||| ||| | |||||| | Sbjct 24886 CTTCTGTGGTGTTGACCTCGGCGTCAAACCAGGCGCGGCCGTCGAGGATGTAGCC---CA 24942 Query 24510 CGACCT---GCTGCCGAAACCAGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACG 24566 | ||| | | || ||| | | ||||||| |||||||||||| | | | | Sbjct 24943 GGGCCTTGAGTTCGCGGAACTTGGCATTGATGCCTTCCACGATGTCTTTCACCATGCTGG 25002 Query 24567 GATTCAGCGGGCCGTCGACGACGGGCATCTGCGCTTCGGCGATCGAATCGCCGGCCACCT 24626 | | || || |||||| | || | || | || || || | ||| | ||||| Sbjct 25003 GGTGCATGGGCTTGTCGACAAAGGCGAAATGACCCTCTGCCATGGTGTCGGCCAGCACCT 25062 Query 24627 GAGCGGTGCGCGTGTAGTTCTCGAACGCGAAC--TTCGGATCGTCCGAGCACGTGCGCTC 24684 | || |||||| | | |||||| |||| |||| ||| ||| |||||| Sbjct 25063 GGGCAGTGCGCACGCTGGACTCGAATCGGAACAGTTCG--TCGGTGCTGCAGGTGCGCGA 25120 Query 24685 GCCCCAGAACCGGAAGCCGTTGCGGTTCACGAGCGTCGTCACTTCGTGCTCGTTCAGGTA 24744 |||||||| || |||| | | ||| | |||||| || || | | ||| || || Sbjct 25121 TCCCCAGAAGCGATAGCCCTGGTAGTTGATGAGCGTGGTGACGTTGCCCTCATTGAGCAG 25180 Query 24745 GCCCGCATCGGTCGCCGGGTCCTGCAAATCCCACGACACGTCGGCGCTGATGCCGGACAC 24804 | || || ||| ||| | |||| || | |||||| ||||||||| | Sbjct 25181 GTTTGCGTCCGTCTCCGAGCTTTGCAGGTCGAAATGCACGTCCTTGCTGATGCCCACCGG 25240 Query 24805 GCCGTTCA-CGACGACATTCGAAATCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCG 24863 ||| || | || | || || || | ||||||||||| || || |||||| | Sbjct 25241 GCCATTTAGCGGC-ACGTTTGACAGGGTCTTGTGCCAACCTTGCTCCACGTCGATGCGGG 25299 Query 24864 CGCGCAAGCCG---GCG---GCGATCGCCGGCGCCGGGATGACAGCCGTCGAGTTCGTCG 24917 |||||| || ||| || | |||||||| |||| ||| | ||| | || Sbjct 25300 CGCGCAGCCCCATCGCGTAGGCCACAGCCGGCGCATTGATG---GCCTT---GTTTGCCG 25353 Query 24918 TGTCGTCCCAGCCGAGCCAGTCCGGCCAGATCACCATGATTTCGCGTTGGCCG-AACTGC 24976 || || |||| | | || ||||||||||||||| ||||||| |||| |||| | Sbjct 25354 TGGTGTTCCAGGCTTTGAAATCGGGCCAGATCACCATGGTTTCGCGGGCGCCGAAACTCC 25413 Query 24977 TTGCGGTACGCGGCGGCTT--CTTCCTTCGTTTTGCAGCCGGACGCCGACACATAGGCCA 25034 ||| ||||| ||| | || | ||| | | |||| | || ||| ||||||| Sbjct 25414 CTGC-ATACGCCAGGGCCTCGCTCACATCG--TCGGCGCCGTGCCCCTGCACGTAGGCCA 25470 Query 25035 TCGCGCGCAGC-GACTGCGCGGTCGCCGCGAGCGCGGCCGCCACCGGCTGCGTATCGAGG 25093 | ||||||||| | || |||| |||| ||| || ||||||| |||| || || || Sbjct 25471 TGGCGCGCAGCTGGATG-GCGGCGGCCGTGAGGGCATCCGCCACGGGCTTGGTGTCCAGC 25529 Query 25094 CCGGGCGCCGCGAGAATGCGCGGCTTCACGCCGAGCGCACCCTGCGCGGCGAGCAGCGCC 25153 ||||| || | || ||||| || |||||||| ||| |||||||| || ||||||| Sbjct 25530 CCGGGGGCGCCCAGGATGCGGGGTTTCACGCCCAGCTGCTGCTGCGCGGTGATCAGCGCC 25589 Query 25154 TTGATGCCCGTGTACTTGCCGTCC 25177 | ||||| | | ||||||| || Sbjct 25590 TGAATGCCGGAGCGCTTGCCGGCC 25613 Score = 150 bits (166), Expect = 4e-32 Identities = 169/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 5283 GCGGGAAGAAGGACGGCATCCAGCTCATTCCCGTGTCCGAGGTCGCCGCGAAGGACGAGT 5342 |||| || || | | |||||| || | ||| | ||||| || || ||||| || | Sbjct 43102 GCGGCAAAGAGAAAGCCATCCAACTGCTGCCCATCGGCGAGGCGGCGGCCAAGGATGAAT 43161 Query 5343 TCTTCAACATCAAGAACGTGACGCGCGATGACCTGCTCGCCGCACACCGCGTGCCGCCGC 5402 | ||||||||||||||||||| |||||||||| | ||||| ||||||||||| |||| Sbjct 43162 TTTTCAACATCAAGAACGTGAGCCGCGATGACCAATTGGCCGCCCACCGCGTGCCTCCGC 43221 Query 5403 AGTTGCTCGGCATCGTGCCGAGCAATTCGGGCGGGTTCGGCACGCCGGATACCGCTGCAC 5462 || | | ||| | |||||| |||| | || || |||||| || | |||||||| Sbjct 43222 AGCTCATGGGCGTGGTGCCGGCCAATGCAGGTGGCTTCGGCGATGTGGTCAACGCTGCAC 43281 Query 5463 GCGTGTTCGGGCGCAACGAAATCAGGCCGCTACAGGCACGCTTCGC 5508 | ||||||| ||||||||||||| ||| || ||| | |||||||| Sbjct 43282 GGGTGTTCGCGCGCAACGAAATCCAGCCCCTGCAGACGCGCTTCGC 43327 Score = 102 bits (112), Expect = 2e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 2187 GCTTCGCGGCGAATTGCAGCGCTTCGGTGCCGAGGCTCGCCGGGTCGTCGGTCGCCGCGA 2246 ||| |||||| || |||||| |||||||| ||||| ||||| |||||| | || | Sbjct 39967 GCTGCGCGGCAAACTGCAGCATCTCGGTGCCCAGGCTGGCCGGCGTGTCGGTGACGGCCA 40026 Query 2247 GCCCGACGAGATACGCCTCGCCGATGTCGGCGAAGTCGGGGTTGATTTCGATCGACGTGA 2306 | ||||| | ||| ||||| ||| | | ||||| ||||||| | ||||| || || Sbjct 40027 GGCCGACCATATAGGCCTCTCCGGAGCCCGCGAAATCGGGGTCCACCTCGATGGAGGTAT 40086 Query 2307 AGAGCTTCTGGCGCTTCTTCGACAGCGCGACGAGCTCGTCGGTCGGATCGATCTGCGCAT 2366 |||||||||||| ||||| | |||| || ||| || | |||||||||| Sbjct 40087 AGAGCTTCTGGCCCTTCTGGTTGATGGCGATCAGAGAGTCCAGGGGCTGAATCTGCGCAT 40146 Query 2367 ACAGCGCCATCTTCCC 2382 ||||||| | ||| || Sbjct 40147 ACAGCGCGAGCTTGCC 40162 >seq5906 Length=1255 Score = 84.2 bits (92), Expect = 5e-12 Identities = 223/334 (67%), Gaps = 10/334 (3%) Strand=Plus/Plus Query 25064 AGCGCGGCCGCCACCGGCTGCGTATCGAGGCCGGGCGCCGCGAGAATGCGCGGCTTCACG 25123 ||||| | || ||||| |||||| || |||||||| | |||| || ||||| || Sbjct 293 AGCGCCGTCGTCACCGCCTGCGTTTCAAGGCCGGGGGTGACGAGGATCTTTGGCTTGACC 352 Query 25124 CCGAGCGCACCCTGCGCGGCGAGCAGCGCCTTGATGCCCGTGTACTTGCCGTCCGGCGTC 25183 || ||| ||||||| || |||||||||| || || || | | ||||| |||||| Sbjct 353 CCCAGCTGCGCCTGCGCCGCCAGCAGCGCCTGCATACCTGTCTTTTGGCCGTT-GGCGTC 411 Query 25184 ACG-GTGCCGATGACGTTCGAGGTCGTCTCGTCGGCGTCCTTGCCTTCGGCGACGCGCAC 25242 || |||||||| || || || || | || || | |||||||| ||||| || Sbjct 412 GGTCGTACCGATGACATTGCTGGCGGTTTCCGCCGCATCGTCCCCTTCGGCCACGCGGAC 471 Query 25243 GACGACGGTCAGCGGCTTCGTCTGCTTGCCGATCGCGTCGAGCGTGCGGCGCAGCGTGCC 25302 ||||| | | ||| | || | | |||| ||| |||| || ||||||||| Sbjct 472 CACGACAATGATCGGGCGAGCATGATCGGCGATGGCGCGCAGCGACAGGGCCAGCGTGCC 531 Query 25303 TTTCTTGCCGGCCTTGCCGAGCGCCGCGACGACGTTCGTCAGCAGCAC-GGGCGTATTGA 25361 | | | ||||| ||||| || | | || | || | ||| | ||||| || || Sbjct 532 GTCCGTCCCGGCGGCGCCGATGGCGGTTTCAACATCGGTGATGAGCGCCGGGCG-ATCGA 590 Query 25362 GCGGAAACGCGCTCGCG---TCAGCGTCGGCCGC 25392 |||| || | | ||| |||||||||||||| Sbjct 591 GCGGGAA---GATAGCGGGATCAGCGTCGGCCGC 621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117265426186216