Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq7053 86.0 6e-12 >seq7053 Length=464797 Score = 86.0 bits (94), Expect = 6e-12 Identities = 188/280 (67%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 20147 GGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCT 20206 || ||||| |||| ||||||||| |||| | ||| | ||||| || || || Sbjct 70227 GGCGTGCGGGTCATCTGCAGCCGCGCCTGCTCGAAATGATTGGCATAGATATGCGCGTCA 70286 Query 20207 CCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATATAAGTT 20266 |||| ||| |||| || || || || | || || || || || || | ||| || Sbjct 70287 CCCAGCGTATGAACGAAATCACCCGGCTTCAGGCCCGTGACCTGCGCCACCATCAGTGTC 70346 Query 20267 AAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGA 20326 | || | |||| ||| ||||| || || || || | || || | || | |||| Sbjct 70347 AGCAGCGCATAGGAGGCGATGTTGAACGGCACGCCGAGGAAGATATCGGCAGAGCGCTGA 70406 Query 20327 TACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGC 20386 || ||||| ||||| |||| || || | ||||| || || | | ||||||||||| Sbjct 70407 TAGAGCTGGCAGGACAGCTTTCCATCGGAAACATAGAACTGGAACAGGCAGTGACAGGGC 70466 Query 20387 GGAAGCGCCA--TCAACGACAAGTCCGCCGGGTTCCACGC 20424 || | ||||| || | || || ||||||||||||||| Sbjct 70467 GGCAACGCCATTTCGTCCACCAG--CGCCGGGTTCCACGC 70504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441289717087560