Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_009603.1
Length=46365
Score E
Sequences producing significant alignments: (Bits) Value
seq6415 244 3e-60
seq8898 223 1e-53
seq6714 188 2e-43
seq2330 168 2e-37
seq7041 145 2e-30
>seq6415
Length=247467
Score = 244 bits (270), Expect = 3e-60
Identities = 352/492 (72%), Gaps = 21/492 (4%)
Strand=Plus/Minus
Query 42649 CACGCCCACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACGGT 42708
|| |||||| || |||||||||||| ||| | | ||| | | ||| |||
Sbjct 227228 CAGGCCCACGCACATGGCGTTGACCAGGATGTTGCCGTTGTAGCCCTTGTGGAAGTTGGT 227169
Query 42709 CTCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGAC 42768
||||||| ||| | | |||| || | ||||||||||||| | ||||||| | ||
Sbjct 227168 CTCGCCGGCGACGGTAGGCACGCCCACGCAGTTGCCGTAGCCGGCGATGCCGGCGACCAC 227109
Query 42769 GCCGTGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCAT 42828
|||| ||||| ||| || | || | |||| |||| ||||||||||||| ||
Sbjct 227108 CCCGTCCACGAGGCGCTTGGTCTTCGGATGCTCGGGATCGCCAAAGCGCAGGGCGTTCAA 227049
Query 42829 GACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGT 42888
|| |||| ||| || |||||||| | || || |||||| | |||||||||||| |||||
Sbjct 227048 GAGGGCGATCGGCCGCGCGCCCATCGTGAAGACGTCGCGCATGATGCCGCCCACGCCCGT 226989
Query 42889 CGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGT 42948
|||||||||||| ||||||||||| ||||||||||||| || |||||| |||||| |
Sbjct 226988 CGCCGCGCCCTGATAGGGCTCGATGTACGAGGGGTGGTTATGGCTCTCCATCTTGAAGAT 226929
Query 42949 GACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCTGCCCCATCCCGACCATGAG 43008
|| ||| || ||||||| |||||||||||| ||||||| | || |||
Sbjct 226928 GATCGCGTCGCCATCGCCGATGTCGATGACGCCGGCGTTCT----CGCCCGGAC------ 226879
Query 43009 GCGCTCGCGCATCTCGTCCGAGACCTTCTG--CCCGAACCTCTTGAGGTAGAGCTTGCTC 43066
||| ||| || || |||| ||| | |||| |||| || | | ||||
Sbjct 226878 -----CGCAGATCACGCGCG-GACC-GCTGATCGGGAACTTCTTCAGCTGGTTCTTGGAG 226826
Query 43067 GACTTGTAGGAGCAGTGCTCCGACCACATCACCGAGTACATCGCCAGCTCGCCCGAGGTG 43126
|||||||| ||||||||||| |||||||| |||||| ||| |||| || | | ||||
Sbjct 226825 GACTTGTACGAGCAGTGCTCGGACCACATGACCGAGAACACGCCCAGTTC-CACCAGGTT 226767
Query 43127 GGGC-GGCGGCC 43137
|||| ||||||
Sbjct 226766 GGGCTCGCGGCC 226755
Score = 118 bits (130), Expect = 3e-22
Identities = 234/344 (68%), Gaps = 7/344 (2%)
Strand=Plus/Minus
Query 41538 CGCCCACGAGAGGAGTGGGGTGGATCGGCACGTCGCCGGTCTGGTTGTAGAACGAGACGT 41597
|||| ||| || ||||| | || | ||| || ||||| |||||||| ||| ||||
Sbjct 228509 CGCCGACGGTCGGGGTGGGCGGAATGGCGACGCCGTTGGTCTCGTTGTAGAGCGACACGT 228450
Query 41598 TCCCGCCCGTGACCGGGGTGCCCAGGGCGTAGCAGCCGTCGGCGAGCCCGTCCACCGTCT 41657
|||| | ||||||| | |||| || |||| | ||||| | || || |
Sbjct 228449 TCCCCGACACGACCGGGAAGTCCAGCGCCCGGCAGGCCTCGGCCATGCCATCGGTGGCGC 228390
Query 41658 GACCGAACTGCCACATGACCTCGGGATTCTCCGGGGAGCCGAAGTTCAGGCAGTCGGTGA 41717
| ||| ||| | |||| |||||| || || ||| ||||||||||||| ||||||||
Sbjct 228389 GGACGATCTGGCCCATGGTCTCGGGCTTTTCGGGGCTGCCGAAGTTCAGGTTGTCGGTGA 228330
Query 41718 CCGCAGTGGGCACGGCGCCGGTGACCGCGACGTTGCGGTAGGCCTCGGCGAGGGCGAGCT 41777
|| | |||| ||||||| | ||| |||||| ||||||| |||| || |||
Sbjct 228329 TGGCGATCGGCAGAGCGCCGGCGGCCG----GTTGCGCCAGGCCTCCGCGACCGCCTGCT 228274
Query 41778 GTGCGCCCGCGTACGGGTCGAGCTGGCAGTAGCGGCCGTTCGCGTCGGTCGCGATCGCGA 41837
||||| |||| |||||| |||| ||||||| | | |||| | | || ||||
Sbjct 228273 TGCCGCCCTCGTAAGGGTCGGCCTGGACGTAGCGGGGGGTGCAGTCGCTGGTGACGGCGA 228214
Query 41838 ACCCGAGGCCCGACTCCTCATCGACGCGGATCATGCCGGCGTCG 41881
| | ||||| | | | | || ||||| ||||||||||||
Sbjct 228213 TCGCCTTGCCCG--TGC-CGTGGATGCGGACGATGCCGGCGTCG 228173
>seq8898
Length=71796
Score = 223 bits (246), Expect = 1e-53
Identities = 254/341 (74%), Gaps = 0/341 (0%)
Strand=Plus/Minus
Query 42649 CACGCCCACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACGGT 42708
|| |||||| || |||||||||||| ||| | | ||| ||| | |||| ||||
Sbjct 40568 CAGGCCCACGCACATGGCGTTGACCAGGATGTTGCCGTTGTAGCCGGGGTGGAACTCGGT 40509
Query 42709 CTCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGAC 42768
||||||| | | |||||| |||| ||||||||||||| || ||||||| | |||
Sbjct 40508 CTCGCCGGCCACCGTCGGCACGCCGACGCAGTTGCCGTAGCCGCCGATGCCGGCGACGAC 40449
Query 42769 GCCGTGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCAT 42828
|||| || | ||| || | ||| | | || |||||||||||||||||| ||
Sbjct 40448 GCCGGCCAGCAGGCGCTTGGTCTTGGGATGGCTGGGATCGCCGAAGCGCAGGGCGTTCAG 40389
Query 42829 GACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGT 42888
|| ||||| || |||||||||| || | |||||| | ||||||||| || |||||
Sbjct 40388 CGGGGCCACCGGCCGCGCGCCCATGGTGAACACGTCGCGCATGATGCCGCCGACGCCCGT 40329
Query 42889 CGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGT 42948
||||||||||||| ||||||||||| | || ||||||||||| |||||| |||||| |
Sbjct 40328 CGCCGCGCCCTGGTAGGGCTCGATGTAGGACGGGTGGTTGTGGCTCTCCATCTTGAAGAT 40269
Query 42949 GACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCT 42989
| ||| || ||||||| |||||| ||||| |||||||
Sbjct 40268 GCAGGCCTGGCCGTCGCCGATGTCGATCACGCCGGCGTTCT 40228
Score = 98.7 bits (108), Expect = 3e-16
Identities = 192/281 (68%), Gaps = 2/281 (1%)
Strand=Plus/Minus
Query 41518 GTCGTCGATGAGGCCGAGCACGCCCACGAGAGGAGTGGGGTGGATCGGCACGTCGCCGGT 41577
|||| ||| ||||||| |||| ||| || || || | || | ||| || |||
Sbjct 41681 GTCGGGGATCAGGCCGACGGCGCCGACGGTCGGGGTCGGCGGAATGGCGACGCCGTTGGT 41622
Query 41578 CTGGTTGTAGAACGAGACGTTCCCGCCCGTGACCGGGGTGCCCAGGGCGTAGCAGCCGTC 41637
|| |||||||| ||||||||| |||| | ||||||| | | || | | |||| | ||
Sbjct 41621 CTCGTTGTAGAGCGAGACGTTGCCGCTCACGACCGGGAAGTCGAGCGTGCGGCAGGCCTC 41562
Query 41638 GGCGAGCCCGTCCACCGT-CTGACCGAACTGCCACATGACCTCGGGATTCTCCGGGGAGC 41696
||| | || || | | | ||| || ||| | ||||| |||||| ||| || ||
Sbjct 41561 GGCCATGCCTTCGATGGCGCCGAC-GATCTGGCCCATGATCTCGGGCCGCTCGGGATTGC 41503
Query 41697 CGAAGTTCAGGCAGTCGGTGACCGCAGTGGGCACGGCGCCGGTGACCGCGACGTTGCGGT 41756
||||||| ||| |||||||| || | || | |||||| | | | | ||||||
Sbjct 41502 CGAAGTTGAGGTTGTCGGTGATGGCGATCGGGTCTGCGCCGACGGCGGTCAGGTTGCGCC 41443
Query 41757 AGGCCTCGGCGAGGGCGAGCTGTGCGCCCGCGTACGGGTCG 41797
|||||||||| | | ||| ||||| |||||||||||
Sbjct 41442 AGGCCTCGGCCACCACCTGCTTGCCGCCCTCGTACGGGTCG 41402
>seq6714
Length=1758414
Score = 188 bits (208), Expect = 2e-43
Identities = 241/331 (73%), Gaps = 1/331 (0%)
Strand=Plus/Minus
Query 42664 GGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACGGTCTCGCCGCCGATGTT 42723
|||||||||||| ||| | | ||| || ||||| | ||||||||| | |
Sbjct 475518 GGCGTTGACCAGGATGTTGCCATTGTAGCGCGCGTCGAAATTGACCTCGCCGCCAACCGT 475459
Query 42724 CGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGACGCCGTGCACGACCCG 42783
||||| |||| | | ||||||||| || || ||||||| |||||| ||| | |
Sbjct 475458 CGGCACGCCGAAGGATTTGCCGTAGCCGCCGACGCCGCTGACCACGCCGGCCACCAGATG 475399
Query 42784 CGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCATGACCGCGACCGGGCG 42843
|| | || | |||| || ||||| ||||| |||| |||| |||||| ||| |
Sbjct 475398 GCGGGTTTTCGGATGATCGGGCGAACCGAAACGCAGCGCGTTCATGGCCGCGATCGGCCT 475339
Query 42844 AGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGTCGCCGCGCCCTGGAA 42903
|||||||||| || || |||||| | ||||||||| || || ||||| |||||||| |
Sbjct 475338 GGCGCCCATGGTGAAGACGTCGCGCAGGATGCCGCCGACCCCGGTCGCAGCGCCCTGATA 475279
Query 42904 GGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGTGACCGCCCATCCCTC 42963
|||||||||||| |||||||||||||| |||||| |||||| ||| | || ||
Sbjct 475278 GGGCTCGATGAAGGAGGGGTGGTTGTGGCTCTCCATCTTGAAGACGACGACGTCGCCGTC 475219
Query 42964 GCCGACGTCGATGACGCCCGCGTTCT-GCCC 42993
||||| ||||| ||||| ||||||| ||||
Sbjct 475218 GCCGATGTCGACCACGCCGGCGTTCTCGCCC 475188
>seq2330
Length=42672
Score = 168 bits (186), Expect = 2e-37
Identities = 311/454 (69%), Gaps = 23/454 (5%)
Strand=Plus/Minus
Query 42652 GCCCACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAA---CACGGT 42708
||| || | || || |||||||| |||| | | |||| ||| | ||| |||
Sbjct 881 GCCGACGGTCATCGCATTGACCAGGATATTGCCGTCATAGGCGGGGTGGAAATTCAC--- 825
Query 42709 CTCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGAC 42768
||||||||| | | |||| | |||| ||| ||||| ||| || |||||| | ||
Sbjct 824 CTCGCCGCCCACGGTCGGGACGCCGACGCAATTGCCATAGCCGCCAATGCCGTGGACCAC 765
Query 42769 GCCGTGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCAT 42828
|||| | || || | | | ||| | ||||| |||||||||||| |||| |||
Sbjct 764 GCCGCTGATGAGATGCTTCATCTTGGGATGGTCGGGACGGCCGAAGCGCAGCGCGTTCAT 705
Query 42829 GACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGT 42888
| || |||||||| |||||||||| || | |||||| | ||| ||||| || || ||
Sbjct 704 GTTGGCCACCGGGCGGGCGCCCATGGTGAACACGTCGCGCAGGATACCGCCGACGCCGGT 645
Query 42889 CGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGT 42948
||| |||||||| |||| |||||| | |||||||||||| || ||| |||||| |
Sbjct 644 CGCGGCGCCCTGATAGGGTTCGATGTAGCTGGGGTGGTTGTGGCTTTCCATCTTGAAGAT 585
Query 42949 GACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCTGCCCCATCCCGACCATGAG 43008
| | ||| || ||||||| ||||| ||||| || |||| || | |
Sbjct 584 GGCGGCCTGGCCATCGCCGATGTCGACCACGCCGGCATTCTCGCC------------GGG 537
Query 43009 GCGCTCGCGCATCTCGTCCGAGACCTT-CTGCCCGAACCTCTTGAGGTAGAGCTTGCTCG 43067
|| | | ||| | | || | |||| || | | | || | |||| || |||| |
Sbjct 536 GC---CACAGATCACCTGCGGGCCCTTGGTGGGC-AGCTTCATCAGGTGGATCTTGGAGG 481
Query 43068 ACTTGTAGGAGCAGTGCTCCGACCACATCACCGA 43101
| ||||| |||||||||||||||||||| |||||
Sbjct 480 ATTTGTAAGAGCAGTGCTCCGACCACATGACCGA 447
>seq7041
Length=191181
Score = 145 bits (160), Expect = 2e-30
Identities = 176/238 (74%), Gaps = 4/238 (2%)
Strand=Plus/Minus
Query 42710 TCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGACG 42769
|||||||| | |||||| |||| | | |||||||| || || ||| | |||
Sbjct 87114 TCGCCGCCAACCGTCGGCACGCCGAAGGAATTGCCGTATCCGCCGACACCGGCGACGACA 87055
Query 42770 CCGTGCACGACCCGCGCCGTGTCG--GGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCA 42827
||| ||||| | | || ||| |||| ||| | ||||||||| ||||| |||| ||
Sbjct 87054 CCGGCCACGAG--GTGGCGGGTCTTCGGGTGGTCAGGCGCGCCGAAACGCAGCGCGTTCA 86997
Query 42828 TGACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCG 42887
|| |||||| |||||| || ||||||| || || ||| || | |||||||| || || |
Sbjct 86996 TGGCCGCGATCGGGCGCGCACCCATGGTGAAGACGTCACGCAGAATGCCGCCGACGCCGG 86937
Query 42888 TCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAA 42945
| ||||| ||||| |||||||||| | || ||||||||||| |||||| ||||||
Sbjct 86936 TTGCCGCACCCTGATAGGGCTCGATATAGGACGGGTGGTTGTGGCTCTCCATCTTGAA 86879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148219889744866
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