Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq6415 244 3e-60 seq8898 223 1e-53 seq6714 188 2e-43 seq2330 168 2e-37 seq7041 145 2e-30 >seq6415 Length=247467 Score = 244 bits (270), Expect = 3e-60 Identities = 352/492 (72%), Gaps = 21/492 (4%) Strand=Plus/Minus Query 42649 CACGCCCACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACGGT 42708 || |||||| || |||||||||||| ||| | | ||| | | ||| ||| Sbjct 227228 CAGGCCCACGCACATGGCGTTGACCAGGATGTTGCCGTTGTAGCCCTTGTGGAAGTTGGT 227169 Query 42709 CTCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGAC 42768 ||||||| ||| | | |||| || | ||||||||||||| | ||||||| | || Sbjct 227168 CTCGCCGGCGACGGTAGGCACGCCCACGCAGTTGCCGTAGCCGGCGATGCCGGCGACCAC 227109 Query 42769 GCCGTGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCAT 42828 |||| ||||| ||| || | || | |||| |||| ||||||||||||| || Sbjct 227108 CCCGTCCACGAGGCGCTTGGTCTTCGGATGCTCGGGATCGCCAAAGCGCAGGGCGTTCAA 227049 Query 42829 GACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGT 42888 || |||| ||| || |||||||| | || || |||||| | |||||||||||| ||||| Sbjct 227048 GAGGGCGATCGGCCGCGCGCCCATCGTGAAGACGTCGCGCATGATGCCGCCCACGCCCGT 226989 Query 42889 CGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGT 42948 |||||||||||| ||||||||||| ||||||||||||| || |||||| |||||| | Sbjct 226988 CGCCGCGCCCTGATAGGGCTCGATGTACGAGGGGTGGTTATGGCTCTCCATCTTGAAGAT 226929 Query 42949 GACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCTGCCCCATCCCGACCATGAG 43008 || ||| || ||||||| |||||||||||| ||||||| | || ||| Sbjct 226928 GATCGCGTCGCCATCGCCGATGTCGATGACGCCGGCGTTCT----CGCCCGGAC------ 226879 Query 43009 GCGCTCGCGCATCTCGTCCGAGACCTTCTG--CCCGAACCTCTTGAGGTAGAGCTTGCTC 43066 ||| ||| || || |||| ||| | |||| |||| || | | |||| Sbjct 226878 -----CGCAGATCACGCGCG-GACC-GCTGATCGGGAACTTCTTCAGCTGGTTCTTGGAG 226826 Query 43067 GACTTGTAGGAGCAGTGCTCCGACCACATCACCGAGTACATCGCCAGCTCGCCCGAGGTG 43126 |||||||| ||||||||||| |||||||| |||||| ||| |||| || | | |||| Sbjct 226825 GACTTGTACGAGCAGTGCTCGGACCACATGACCGAGAACACGCCCAGTTC-CACCAGGTT 226767 Query 43127 GGGC-GGCGGCC 43137 |||| |||||| Sbjct 226766 GGGCTCGCGGCC 226755 Score = 118 bits (130), Expect = 3e-22 Identities = 234/344 (68%), Gaps = 7/344 (2%) Strand=Plus/Minus Query 41538 CGCCCACGAGAGGAGTGGGGTGGATCGGCACGTCGCCGGTCTGGTTGTAGAACGAGACGT 41597 |||| ||| || ||||| | || | ||| || ||||| |||||||| ||| |||| Sbjct 228509 CGCCGACGGTCGGGGTGGGCGGAATGGCGACGCCGTTGGTCTCGTTGTAGAGCGACACGT 228450 Query 41598 TCCCGCCCGTGACCGGGGTGCCCAGGGCGTAGCAGCCGTCGGCGAGCCCGTCCACCGTCT 41657 |||| | ||||||| | |||| || |||| | ||||| | || || | Sbjct 228449 TCCCCGACACGACCGGGAAGTCCAGCGCCCGGCAGGCCTCGGCCATGCCATCGGTGGCGC 228390 Query 41658 GACCGAACTGCCACATGACCTCGGGATTCTCCGGGGAGCCGAAGTTCAGGCAGTCGGTGA 41717 | ||| ||| | |||| |||||| || || ||| ||||||||||||| |||||||| Sbjct 228389 GGACGATCTGGCCCATGGTCTCGGGCTTTTCGGGGCTGCCGAAGTTCAGGTTGTCGGTGA 228330 Query 41718 CCGCAGTGGGCACGGCGCCGGTGACCGCGACGTTGCGGTAGGCCTCGGCGAGGGCGAGCT 41777 || | |||| ||||||| | ||| |||||| ||||||| |||| || ||| Sbjct 228329 TGGCGATCGGCAGAGCGCCGGCGGCCG----GTTGCGCCAGGCCTCCGCGACCGCCTGCT 228274 Query 41778 GTGCGCCCGCGTACGGGTCGAGCTGGCAGTAGCGGCCGTTCGCGTCGGTCGCGATCGCGA 41837 ||||| |||| |||||| |||| ||||||| | | |||| | | || |||| Sbjct 228273 TGCCGCCCTCGTAAGGGTCGGCCTGGACGTAGCGGGGGGTGCAGTCGCTGGTGACGGCGA 228214 Query 41838 ACCCGAGGCCCGACTCCTCATCGACGCGGATCATGCCGGCGTCG 41881 | | ||||| | | | | || ||||| |||||||||||| Sbjct 228213 TCGCCTTGCCCG--TGC-CGTGGATGCGGACGATGCCGGCGTCG 228173 >seq8898 Length=71796 Score = 223 bits (246), Expect = 1e-53 Identities = 254/341 (74%), Gaps = 0/341 (0%) Strand=Plus/Minus Query 42649 CACGCCCACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACGGT 42708 || |||||| || |||||||||||| ||| | | ||| ||| | |||| |||| Sbjct 40568 CAGGCCCACGCACATGGCGTTGACCAGGATGTTGCCGTTGTAGCCGGGGTGGAACTCGGT 40509 Query 42709 CTCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGAC 42768 ||||||| | | |||||| |||| ||||||||||||| || ||||||| | ||| Sbjct 40508 CTCGCCGGCCACCGTCGGCACGCCGACGCAGTTGCCGTAGCCGCCGATGCCGGCGACGAC 40449 Query 42769 GCCGTGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCAT 42828 |||| || | ||| || | ||| | | || |||||||||||||||||| || Sbjct 40448 GCCGGCCAGCAGGCGCTTGGTCTTGGGATGGCTGGGATCGCCGAAGCGCAGGGCGTTCAG 40389 Query 42829 GACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGT 42888 || ||||| || |||||||||| || | |||||| | ||||||||| || ||||| Sbjct 40388 CGGGGCCACCGGCCGCGCGCCCATGGTGAACACGTCGCGCATGATGCCGCCGACGCCCGT 40329 Query 42889 CGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGT 42948 ||||||||||||| ||||||||||| | || ||||||||||| |||||| |||||| | Sbjct 40328 CGCCGCGCCCTGGTAGGGCTCGATGTAGGACGGGTGGTTGTGGCTCTCCATCTTGAAGAT 40269 Query 42949 GACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCT 42989 | ||| || ||||||| |||||| ||||| ||||||| Sbjct 40268 GCAGGCCTGGCCGTCGCCGATGTCGATCACGCCGGCGTTCT 40228 Score = 98.7 bits (108), Expect = 3e-16 Identities = 192/281 (68%), Gaps = 2/281 (1%) Strand=Plus/Minus Query 41518 GTCGTCGATGAGGCCGAGCACGCCCACGAGAGGAGTGGGGTGGATCGGCACGTCGCCGGT 41577 |||| ||| ||||||| |||| ||| || || || | || | ||| || ||| Sbjct 41681 GTCGGGGATCAGGCCGACGGCGCCGACGGTCGGGGTCGGCGGAATGGCGACGCCGTTGGT 41622 Query 41578 CTGGTTGTAGAACGAGACGTTCCCGCCCGTGACCGGGGTGCCCAGGGCGTAGCAGCCGTC 41637 || |||||||| ||||||||| |||| | ||||||| | | || | | |||| | || Sbjct 41621 CTCGTTGTAGAGCGAGACGTTGCCGCTCACGACCGGGAAGTCGAGCGTGCGGCAGGCCTC 41562 Query 41638 GGCGAGCCCGTCCACCGT-CTGACCGAACTGCCACATGACCTCGGGATTCTCCGGGGAGC 41696 ||| | || || | | | ||| || ||| | ||||| |||||| ||| || || Sbjct 41561 GGCCATGCCTTCGATGGCGCCGAC-GATCTGGCCCATGATCTCGGGCCGCTCGGGATTGC 41503 Query 41697 CGAAGTTCAGGCAGTCGGTGACCGCAGTGGGCACGGCGCCGGTGACCGCGACGTTGCGGT 41756 ||||||| ||| |||||||| || | || | |||||| | | | | |||||| Sbjct 41502 CGAAGTTGAGGTTGTCGGTGATGGCGATCGGGTCTGCGCCGACGGCGGTCAGGTTGCGCC 41443 Query 41757 AGGCCTCGGCGAGGGCGAGCTGTGCGCCCGCGTACGGGTCG 41797 |||||||||| | | ||| ||||| ||||||||||| Sbjct 41442 AGGCCTCGGCCACCACCTGCTTGCCGCCCTCGTACGGGTCG 41402 >seq6714 Length=1758414 Score = 188 bits (208), Expect = 2e-43 Identities = 241/331 (73%), Gaps = 1/331 (0%) Strand=Plus/Minus Query 42664 GGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACGGTCTCGCCGCCGATGTT 42723 |||||||||||| ||| | | ||| || ||||| | ||||||||| | | Sbjct 475518 GGCGTTGACCAGGATGTTGCCATTGTAGCGCGCGTCGAAATTGACCTCGCCGCCAACCGT 475459 Query 42724 CGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGACGCCGTGCACGACCCG 42783 ||||| |||| | | ||||||||| || || ||||||| |||||| ||| | | Sbjct 475458 CGGCACGCCGAAGGATTTGCCGTAGCCGCCGACGCCGCTGACCACGCCGGCCACCAGATG 475399 Query 42784 CGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCATGACCGCGACCGGGCG 42843 || | || | |||| || ||||| ||||| |||| |||| |||||| ||| | Sbjct 475398 GCGGGTTTTCGGATGATCGGGCGAACCGAAACGCAGCGCGTTCATGGCCGCGATCGGCCT 475339 Query 42844 AGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGTCGCCGCGCCCTGGAA 42903 |||||||||| || || |||||| | ||||||||| || || ||||| |||||||| | Sbjct 475338 GGCGCCCATGGTGAAGACGTCGCGCAGGATGCCGCCGACCCCGGTCGCAGCGCCCTGATA 475279 Query 42904 GGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGTGACCGCCCATCCCTC 42963 |||||||||||| |||||||||||||| |||||| |||||| ||| | || || Sbjct 475278 GGGCTCGATGAAGGAGGGGTGGTTGTGGCTCTCCATCTTGAAGACGACGACGTCGCCGTC 475219 Query 42964 GCCGACGTCGATGACGCCCGCGTTCT-GCCC 42993 ||||| ||||| ||||| ||||||| |||| Sbjct 475218 GCCGATGTCGACCACGCCGGCGTTCTCGCCC 475188 >seq2330 Length=42672 Score = 168 bits (186), Expect = 2e-37 Identities = 311/454 (69%), Gaps = 23/454 (5%) Strand=Plus/Minus Query 42652 GCCCACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAA---CACGGT 42708 ||| || | || || |||||||| |||| | | |||| ||| | ||| ||| Sbjct 881 GCCGACGGTCATCGCATTGACCAGGATATTGCCGTCATAGGCGGGGTGGAAATTCAC--- 825 Query 42709 CTCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGAC 42768 ||||||||| | | |||| | |||| ||| ||||| ||| || |||||| | || Sbjct 824 CTCGCCGCCCACGGTCGGGACGCCGACGCAATTGCCATAGCCGCCAATGCCGTGGACCAC 765 Query 42769 GCCGTGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCAT 42828 |||| | || || | | | ||| | ||||| |||||||||||| |||| ||| Sbjct 764 GCCGCTGATGAGATGCTTCATCTTGGGATGGTCGGGACGGCCGAAGCGCAGCGCGTTCAT 705 Query 42829 GACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGT 42888 | || |||||||| |||||||||| || | |||||| | ||| ||||| || || || Sbjct 704 GTTGGCCACCGGGCGGGCGCCCATGGTGAACACGTCGCGCAGGATACCGCCGACGCCGGT 645 Query 42889 CGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGT 42948 ||| |||||||| |||| |||||| | |||||||||||| || ||| |||||| | Sbjct 644 CGCGGCGCCCTGATAGGGTTCGATGTAGCTGGGGTGGTTGTGGCTTTCCATCTTGAAGAT 585 Query 42949 GACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCTGCCCCATCCCGACCATGAG 43008 | | ||| || ||||||| ||||| ||||| || |||| || | | Sbjct 584 GGCGGCCTGGCCATCGCCGATGTCGACCACGCCGGCATTCTCGCC------------GGG 537 Query 43009 GCGCTCGCGCATCTCGTCCGAGACCTT-CTGCCCGAACCTCTTGAGGTAGAGCTTGCTCG 43067 || | | ||| | | || | |||| || | | | || | |||| || |||| | Sbjct 536 GC---CACAGATCACCTGCGGGCCCTTGGTGGGC-AGCTTCATCAGGTGGATCTTGGAGG 481 Query 43068 ACTTGTAGGAGCAGTGCTCCGACCACATCACCGA 43101 | ||||| |||||||||||||||||||| ||||| Sbjct 480 ATTTGTAAGAGCAGTGCTCCGACCACATGACCGA 447 >seq7041 Length=191181 Score = 145 bits (160), Expect = 2e-30 Identities = 176/238 (74%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 42710 TCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGACG 42769 |||||||| | |||||| |||| | | |||||||| || || ||| | ||| Sbjct 87114 TCGCCGCCAACCGTCGGCACGCCGAAGGAATTGCCGTATCCGCCGACACCGGCGACGACA 87055 Query 42770 CCGTGCACGACCCGCGCCGTGTCG--GGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCA 42827 ||| ||||| | | || ||| |||| ||| | ||||||||| ||||| |||| || Sbjct 87054 CCGGCCACGAG--GTGGCGGGTCTTCGGGTGGTCAGGCGCGCCGAAACGCAGCGCGTTCA 86997 Query 42828 TGACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCG 42887 || |||||| |||||| || ||||||| || || ||| || | |||||||| || || | Sbjct 86996 TGGCCGCGATCGGGCGCGCACCCATGGTGAAGACGTCACGCAGAATGCCGCCGACGCCGG 86937 Query 42888 TCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAA 42945 | ||||| ||||| |||||||||| | || ||||||||||| |||||| |||||| Sbjct 86936 TTGCCGCACCCTGATAGGGCTCGATATAGGACGGGTGGTTGTGGCTCTCCATCTTGAA 86879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148219889744866