Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_009816.1
Length=70579
Score E
Sequences producing significant alignments: (Bits) Value
seq8824 127 9e-25
>seq8824
Length=455128
Score = 127 bits (140), Expect = 9e-25
Identities = 244/358 (68%), Gaps = 4/358 (1%)
Strand=Plus/Plus
Query 58452 CGGATGTAGTACAGAGACTTCAGGCCCTTCTTGTGAGCGTAGATCTGCGCTCGGTTAATG 58511
||||||||||| | | ||| | ||||||||| |||||||||||||| ||||| ||
Sbjct 417021 CGGATGTAGTAGATGGTCTTGATGCCCTTCTTCCAGGCGTAGATCTGCGCCCGGTTGATA 417080
Query 58512 TCTCGCGTTGTCGCTGTATCTGGGAAGAACAGCGTGAGAGACATGCCCTGGTCTACCCAA 58571
|| ||||| || || ||||| ||||||||||||| || |||| |||||| || ||
Sbjct 417081 TCGCGCGTCGTGGCGGTATCGCGGAAGAACAGCGTCAGCGACAGGCCCTGATCGACATGC 417140
Query 58572 GGAGATGCTACAGCGTACATATCAATGATCGGGTTAGGTCCGATAGCGTAAGCG--CTAT 58629
| | || | || || |||| |||||| | ||| ||||| | || ||| ||
Sbjct 417141 TGGGTGGCCGCCGCATAGGTATCGATGATCTTTTCAGGGCCGATCTCATAGGCGTCCTGA 417200
Query 58630 CAATTGATTCTACATTCTCATTGGTCACTCCGTACTGAGGGTAATAGACTCGACCAAGCT 58689
||| |||| | ||| || || | | | | |||||||| || || || | ||
Sbjct 417201 TAAT--ATTCGAGATTGTCGTTCGAGAGATAGGAAGCCGGGTAATAAACGCGGCCGATCT 417258
Query 58690 TACCCTCCTTGCGAACCTCAACAGGAGAGGTCACAGGGTGAATCGAGGCCGTGGCATGGT 58749
| ||||| || || | || | ||| | || ||||| || | |||| ||||
Sbjct 417259 TTCCCTCTTTACGGATTTCGATCTTCGAGACGATCGGATGAATGGAAGAGGTGGAGTGGT 417318
Query 58750 TAATGTACGAGATAGAGCCGGTTGGTGGGATCGCCTGGAGGTTCTGGTTGTAAATACC 58807
| || || ||||| ||||| || || || | ||||| ||||||||||| || | |||
Sbjct 417319 TGATATAGGAGATCGAGCCAGTGGGGGGCACGGCCTGTAGGTTCTGGTTATAGAGACC 417376
Score = 86.0 bits (94), Expect = 3e-12
Identities = 109/148 (74%), Gaps = 8/148 (5%)
Strand=Plus/Plus
Query 57382 CTGGAATTTATATCCCAAGTAATAGCCATGCACACCCTCGTCTCTCATGATAAGGCGGAT 57441
|||||| || || || | ||||||||| ||||| ||||||| | ||||| || |||||
Sbjct 416317 CTGGAACTTGTAGCCGATGTAATAGCCGTGCACGGCCTCGTCGCGGATGATCAGACGGAT 416376
Query 57442 AAGGTCCGCTGTGTTGGTGAGTTTACCTTGAGAGGC--GAAGTGAAGA--GGGAGATAGA 57497
| ||||| ||||||||||| | | | | ||| || ||| | || |||||||
Sbjct 416377 CAAATCCGCCGTGTTGGTGAG----CTTGGCGCGGCTTGACCAGAACATCGGCAGATAGA 416432
Query 57498 AGCCGGTATAGAACAAGAATGATTCCAG 57525
|||||| |||||||| ||| ||||||
Sbjct 416433 AGCCGGAATAGAACAGGAAGCTTTCCAG 416460
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 225686571787460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |