Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq8824 127 9e-25 >seq8824 Length=455128 Score = 127 bits (140), Expect = 9e-25 Identities = 244/358 (68%), Gaps = 4/358 (1%) Strand=Plus/Plus Query 58452 CGGATGTAGTACAGAGACTTCAGGCCCTTCTTGTGAGCGTAGATCTGCGCTCGGTTAATG 58511 ||||||||||| | | ||| | ||||||||| |||||||||||||| ||||| || Sbjct 417021 CGGATGTAGTAGATGGTCTTGATGCCCTTCTTCCAGGCGTAGATCTGCGCCCGGTTGATA 417080 Query 58512 TCTCGCGTTGTCGCTGTATCTGGGAAGAACAGCGTGAGAGACATGCCCTGGTCTACCCAA 58571 || ||||| || || ||||| ||||||||||||| || |||| |||||| || || Sbjct 417081 TCGCGCGTCGTGGCGGTATCGCGGAAGAACAGCGTCAGCGACAGGCCCTGATCGACATGC 417140 Query 58572 GGAGATGCTACAGCGTACATATCAATGATCGGGTTAGGTCCGATAGCGTAAGCG--CTAT 58629 | | || | || || |||| |||||| | ||| ||||| | || ||| || Sbjct 417141 TGGGTGGCCGCCGCATAGGTATCGATGATCTTTTCAGGGCCGATCTCATAGGCGTCCTGA 417200 Query 58630 CAATTGATTCTACATTCTCATTGGTCACTCCGTACTGAGGGTAATAGACTCGACCAAGCT 58689 ||| |||| | ||| || || | | | | |||||||| || || || | || Sbjct 417201 TAAT--ATTCGAGATTGTCGTTCGAGAGATAGGAAGCCGGGTAATAAACGCGGCCGATCT 417258 Query 58690 TACCCTCCTTGCGAACCTCAACAGGAGAGGTCACAGGGTGAATCGAGGCCGTGGCATGGT 58749 | ||||| || || | || | ||| | || ||||| || | |||| |||| Sbjct 417259 TTCCCTCTTTACGGATTTCGATCTTCGAGACGATCGGATGAATGGAAGAGGTGGAGTGGT 417318 Query 58750 TAATGTACGAGATAGAGCCGGTTGGTGGGATCGCCTGGAGGTTCTGGTTGTAAATACC 58807 | || || ||||| ||||| || || || | ||||| ||||||||||| || | ||| Sbjct 417319 TGATATAGGAGATCGAGCCAGTGGGGGGCACGGCCTGTAGGTTCTGGTTATAGAGACC 417376 Score = 86.0 bits (94), Expect = 3e-12 Identities = 109/148 (74%), Gaps = 8/148 (5%) Strand=Plus/Plus Query 57382 CTGGAATTTATATCCCAAGTAATAGCCATGCACACCCTCGTCTCTCATGATAAGGCGGAT 57441 |||||| || || || | ||||||||| ||||| ||||||| | ||||| || ||||| Sbjct 416317 CTGGAACTTGTAGCCGATGTAATAGCCGTGCACGGCCTCGTCGCGGATGATCAGACGGAT 416376 Query 57442 AAGGTCCGCTGTGTTGGTGAGTTTACCTTGAGAGGC--GAAGTGAAGA--GGGAGATAGA 57497 | ||||| ||||||||||| | | | | ||| || ||| | || ||||||| Sbjct 416377 CAAATCCGCCGTGTTGGTGAG----CTTGGCGCGGCTTGACCAGAACATCGGCAGATAGA 416432 Query 57498 AGCCGGTATAGAACAAGAATGATTCCAG 57525 |||||| |||||||| ||| |||||| Sbjct 416433 AGCCGGAATAGAACAGGAAGCTTTCCAG 416460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225686571787460