Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3764 116 9e-21 seq6889 114 3e-20 seq504 114 3e-20 seq9853 107 5e-18 seq8560 105 2e-17 seq9216 91.5 3e-13 >seq3764 Length=1885950 Score = 116 bits (128), Expect = 9e-21 Identities = 164/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 1780319 TCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 1780260 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATC 288362 | || ||||| ||||| | ||| || || | |||||||| | |||| | || | Sbjct 1780259 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGA-- 1780202 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || |||||||| ||||||||||| || || || || ||| |||| | ||| | || Sbjct 1780201 -GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTCCTATTGTATCCGAGGGCTC 1780143 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGC 288471 || || || ||||| |||||||| |||| ||||| ||||| |||||| Sbjct 1780142 GACCTCAAGAGTGATGGTCTTCCCCCTCAGGGTCTTCACGAAAATCTGC 1780094 >seq6889 Length=11136585 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| | ||||| | || || || || ||| Sbjct 1034045 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCAATCTTCCAGCTGCTTGCCGGCAAAG 1034104 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||| ||||||||||| || || |||||||| Sbjct 1034105 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 1034164 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | ||||| || || ||||| ||||| |||||||| ||||| ||| Sbjct 1034165 TCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 1034224 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1034225 AAGATCTGCAT 1034235 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || || || | || ||||| || ||||| | || || || || ||| Sbjct 1033817 TCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 1033876 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||| ||||||||||| || || |||||||| Sbjct 1033877 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 1033936 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || | | || || | ||| | || || ||||| | ||| |||||||| ||||| ||| Sbjct 1033937 TCGGTGGTGTCACTGGGCTCTTCCTCCAGGGTGATGGCCTTGCCGGTCAGGGTCTTCACG 1033996 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1033997 AAGATCTGCAT 1034007 Score = 100 bits (110), Expect = 7e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || | || ||||| || ||||| | || || || || ||| Sbjct 1034273 TCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 1034332 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||| ||||||||||| || || ||||| || Sbjct 1034333 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTC 1034392 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| || || ||| Sbjct 1034393 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACG 1034452 Query 288463 AATATCTGCATTATG 288477 || || |||||| || Sbjct 1034453 AAGATTTGCATTTTG 1034467 >seq504 Length=1076656 Score = 114 bits (126), Expect = 3e-20 Identities = 163/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 288249 ACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAG 288308 ||| || ||||| | || ||| ||| ||| || ||||| || || ||||| | | Sbjct 268502 ACCACGAAGTCTCAACACTAGACGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAA 268443 Query 288309 CGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCTGG 288365 || | ||| ||||| | ||| || || || |||||||| | |||| | || | || Sbjct 268442 AGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA---GG 268386 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||| ||||||||||| || | || ||||||||| | | ||| | || || Sbjct 268385 AATTCCTTCCTTATCCTGGATCTTGGGCTTTACGTTTTCTGTTGTATCCGAGGGCTCGAC 268326 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 268325 GTCAAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 268278 >seq9853 Length=4041771 Score = 107 bits (118), Expect = 5e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || || || | ||| ||||| |||||||| ||||| | Sbjct 359783 CCGCCTCGCAGACGAAGCACCAGGTGCAGGGTGAACTCTTTCTGGATATTGTAGTCTGAC 359842 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || | | ||||| || | ||||||||||||||| || |||| Sbjct 359843 AGAGTGCGGCCATCCTGCAGCTGTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGGG 359902 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || | || |||||||| ||||| || |||| || | || || | || || Sbjct 359903 ATGCCCTCCTCGTCTTGGATTTTGGCTTTGACACTTTCAATGGTGTCACTGGGCTCGACC 359962 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || |||| ||||| || || |||||||| Sbjct 359963 TCAAGAGTGATGGTCTTGCCCATCAGCGTCTTCACAAAGATCTGCAT 360009 >seq8560 Length=3069389 Score = 105 bits (116), Expect = 2e-17 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | || | ||||| ||| || ||||| || || ||||| | Sbjct 2390301 CCACCACAAAGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 2390242 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTG--AGAATCTG 288364 | || ||||| ||||| | ||| ||||| || |||||||| | || || || | | Sbjct 2390241 AAAGTACGTCCATCTTCCACTTGCTTTCCAGCAAAGATCAGTCTTTGCTGTCAGGA---G 2390185 Query 288365 GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 | |||||||| ||||||||||| || | | || | |||||| | ||| | || | Sbjct 2390184 GAATTCCTTCCTTATCCTGGATCTTGACCATTACATCTTCTATTGTATCAGAGGGCTCGA 2390125 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTC-AGAGTCTTGACGAATATCTGCAT 288473 | | ||| ||||| |||||||| ||| |||||||| || || |||||||| Sbjct 2390124 CCTTGAGAGTGATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCAT 2390075 >seq9216 Length=6899875 Score = 91.5 bits (100), Expect = 3e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 288249 ACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAG 288308 ||| | |||||| || ||| ||| ||| || ||||| || || ||||| | | Sbjct 1291547 ACCACAGAGTCTCGACACAAGAGGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGACAA 1291488 Query 288309 CGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGAT 288368 || | ||| ||||| | ||| || || || |||||||| | || || | | || Sbjct 1291487 AGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGGTGGTCAGGAAGAAT 1291428 Query 288369 TCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTC 288428 |||||| ||||||||||| || || || || ||| |||| | ||| | | || || Sbjct 1291427 TCCTTCCTTATCCTGGATCTTGGCCTTTACATTTACTATTGTATCCGAGGGCTTGACCTC 1291368 Query 288429 GAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| |||||| | ||||| ||||| | ||| |||||||| Sbjct 1291367 AAGAGTGATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCAT 1291323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179426793425002