Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_010116.1
Length=58663
Score E
Sequences producing significant alignments: (Bits) Value
seq7053 87.8 7e-13
seq1061 87.8 7e-13
>seq7053
Length=464797
Score = 87.8 bits (96), Expect = 7e-13
Identities = 106/144 (74%), Gaps = 8/144 (6%)
Strand=Plus/Minus
Query 5615 GAGGAGTTCGACTATGGCTATGCGCTCACCGTCCACAAGTCGCAGGGCTCCCAGTGGAAC 5674
|| || ||||| | ||||||||||| ||||| |||||| |||||||||| |||||||||
Sbjct 49321 GACGAATTCGATTTCGGCTATGCGCTGACCGTGCACAAGGCGCAGGGCTCGCAGTGGAAC 49262
Query 5675 AACGTCCTGCTGTTTGACGAGTGGTA-------CGGGAAGGACCGGAAGGAATGGCTGTA 5727
||||| | || || || ||| | || ||||| | ||| | |||||| ||
Sbjct 49261 AACGTGGTTCTCTTCGATGAGAGCTACGCTTTCCGGGATTCTCGCGAAAG-ATGGCTTTA 49203
Query 5728 CACCGCCATTACCCGGGCCGCGGA 5751
||||||||||| || || || ||
Sbjct 49202 TACCGCCATTACGCGTGCGGCAGA 49179
>seq1061
Length=1113
Score = 87.8 bits (96), Expect = 7e-13
Identities = 68/81 (84%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 5615 GAGGAGTTCGACTATGGCTATGCGCTCACCGTCCACAAGTCGCAGGGCTCCCAGTGGAAC 5674
|| ||||||||||| ||||| | || ||||| ||||||||||||||||| |||||| ||
Sbjct 1012 GACGAGTTCGACTACGGCTACGTCCTGACCGTGCACAAGTCGCAGGGCTCGCAGTGGGAC 1071
Query 5675 AACGTCCTGCTGTTTGACGAG 5695
| ||| ||||||| ||||||
Sbjct 1072 GATGTCGTGCTGTTCGACGAG 1092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 187566452312750
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |