Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_010116.1 Length=58663 Score E Sequences producing significant alignments: (Bits) Value seq7053 87.8 7e-13 seq1061 87.8 7e-13 >seq7053 Length=464797 Score = 87.8 bits (96), Expect = 7e-13 Identities = 106/144 (74%), Gaps = 8/144 (6%) Strand=Plus/Minus Query 5615 GAGGAGTTCGACTATGGCTATGCGCTCACCGTCCACAAGTCGCAGGGCTCCCAGTGGAAC 5674 || || ||||| | ||||||||||| ||||| |||||| |||||||||| ||||||||| Sbjct 49321 GACGAATTCGATTTCGGCTATGCGCTGACCGTGCACAAGGCGCAGGGCTCGCAGTGGAAC 49262 Query 5675 AACGTCCTGCTGTTTGACGAGTGGTA-------CGGGAAGGACCGGAAGGAATGGCTGTA 5727 ||||| | || || || ||| | || ||||| | ||| | |||||| || Sbjct 49261 AACGTGGTTCTCTTCGATGAGAGCTACGCTTTCCGGGATTCTCGCGAAAG-ATGGCTTTA 49203 Query 5728 CACCGCCATTACCCGGGCCGCGGA 5751 ||||||||||| || || || || Sbjct 49202 TACCGCCATTACGCGTGCGGCAGA 49179 >seq1061 Length=1113 Score = 87.8 bits (96), Expect = 7e-13 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 5615 GAGGAGTTCGACTATGGCTATGCGCTCACCGTCCACAAGTCGCAGGGCTCCCAGTGGAAC 5674 || ||||||||||| ||||| | || ||||| ||||||||||||||||| |||||| || Sbjct 1012 GACGAGTTCGACTACGGCTACGTCCTGACCGTGCACAAGTCGCAGGGCTCGCAGTGGGAC 1071 Query 5675 AACGTCCTGCTGTTTGACGAG 5695 | ||| ||||||| |||||| Sbjct 1072 GATGTCGTGCTGTTCGACGAG 1092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187566452312750