Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq10097 114 2e-20 seq9639 100 3e-16 seq8301 98.7 1e-15 >seq10097 Length=214583 Score = 114 bits (126), Expect = 2e-20 Identities = 280/413 (68%), Gaps = 10/413 (2%) Strand=Plus/Plus Query 10774 CACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAAT 10833 |||| || || ||| || ||||| || || || || || ||| |||||| | |||| Sbjct 47674 CACGACGACCTGACGGTCGAAGCGGCCGGGACGCAGAAGTGCGGGGTCAAGAACATCAGG 47733 Query 10834 GCGGTTCGTCGCCGCGATGACAACGATGCCCGTC--TCGTTATCAAAGCCATCCATCTCA 10891 ||||| || || || |||| | ||||||| || ||| || ||||| ||||| || Sbjct 47734 ACGGTTGGTGGCGGCAATGAGGATGATGCCC-TCATTCGCC-TCGAAGCCGTCCATTTCG 47791 Query 10892 GTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGG-GCATACCACCCGCACT 10950 || || || || | || ||||| ||||| || || || || | ||| || | Sbjct 47792 ACCAGCAGCTGGTTCAGCGTCTGTTCACGTTCGTCGTTACCGCCGCCGAG-ACCGGCGCC 47850 Query 10951 GCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATT-TTCAC 11009 || || |||||||| || ||||| |||||||| | ||| | || ||| ||| Sbjct 47851 ACGATGGCGGCCGACGGCATCGATTTCGTCGATGAAGATGATGGAGGGCGCATTCTTCTT 47910 Query 11010 GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAA 11069 || | || | || || || || || | | || ||||| || || ||||||||||| | Sbjct 47911 GGCCTGCT-CGAACATGTCACGCACACGGCTTGCGCCGACGCCGACGAACATTTCCACGA 47969 Query 11070 AATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCG 11128 ||| | ||||| || | || |||||| ||||||| ||| || |||| || || || Sbjct 47970 AATCCGAACCGGAA-ATGGTGAAGAAGGGCACGTTGGCTTCGCCAGCGACGGAACGCGCC 48028 Query 11129 AGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGAT 11181 || || ||||| ||||| || || || |||| || ||||||| || || Sbjct 48029 AGCAGCGTCTTACCCGTGCCCGGAGGGCCAACGAGCAGCACACCACGCGGAAT 48081 >seq9639 Length=103419 Score = 100 bits (110), Expect = 3e-16 Identities = 348/538 (65%), Gaps = 10/538 (2%) Strand=Plus/Minus Query 10742 ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCT 10801 |||| |||||| ||||| | | ||| || | ||| | || || || || || || Sbjct 60855 ATCTGCTCGCGGCCGCGGATATCGGGCAGCGTCACATACACCTGGCGGTCGAAACGGCCG 60796 Query 10802 GGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATG 10861 ||||| || || || | || ||||| || ||||| ||||| || | ||| | | | Sbjct 60795 GGGCGCAGCAGCGCCGCATCCAGGATGTCGGGACGGTTGGTCGCAGCCACGACGATCACG 60736 Query 10862 CCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGT 10921 || | | | || ||||| |||||||| || | || || | ||| ||||| || Sbjct 60735 CCGAGGTTGGTCTCGAAGCCGTCCATCTCGACCAGCATCTGGTTCAGGGTCTGTTCACGC 60676 Query 10922 TCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCAT 10979 ||||| || | | ||| || || | ||| || || |||||||| ||||||| Sbjct 60675 TCATCGTTGCCA--CCGCCCAGGCCTGCGCCGCGCTGGCGGCCCACGGCGTCGATTTCAT 60618 Query 10980 CGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCT 11039 ||||||| | ||| || ||| ||| | ||| || || || || || || | Sbjct 60617 CGATGAAGATGATGCAGGGTGCATTCTTCTTGGCGTTCTCGAACATGTCGCGCACGCGGG 60558 Query 11040 TGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGA 11099 || || || || || ||||||||||| || | || | | || || ||| |||| Sbjct 60557 CCGCGCCCACGCCGACGAACATTTCCACGAAGTCGGAGCCCGAGATGCTGAAGAACGGGA 60498 Query 11100 CGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTG 11159 | |||| |||||| ||||||| ||| || || ||||| || || || || || Sbjct 60497 CCTTGGCTTCACCAGCGATGGACTTGGCCAGCAGCGTCTTGCCGGTACCCGGAGGACCGA 60438 Query 11160 CGAGAAGGGCACCACGTGGGATCCTGGCACC--ACTTC-CAAAGTAGCGCTCAGGTTGTT 11216 | || || |||||| || || | | | || |||| || | | | || | | Sbjct 60437 CCAGCAGCAGACCACGCGGAATACGGCCGCCGAGCTTCTGGAACTTG---TTGGGGTCCT 60381 Query 11217 TAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCAGCGTCGATGCCTTCAACGTC 11274 | ||||||||||||| ||| | | || ||||| || ||||| |||| ||||||| Sbjct 60380 TCAGGAAGTCCACGACTTCCTTGACCTCTTCCTTGGCTTCGTCGCAGCCTGCAACGTC 60323 >seq8301 Length=73398 Score = 98.7 bits (108), Expect = 1e-15 Identities = 278/417 (67%), Gaps = 14/417 (3%) Strand=Plus/Minus Query 10742 ATCTTCTCGCGACCGCGCAC-ACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACC 10800 |||||||||||||||| ||| | |||| || ||| || || || || ||||| || Sbjct 66876 ATCTTCTCGCGACCGCCCACGTCCGGGTTCGG-CACCACGACCTGGCGGTCGAAGCGGCC 66818 Query 10801 TGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGAT 10860 || || || ||||| ||| || | || ||||| || || ||||| | | ||| Sbjct 66817 CGGACGCAGCAGGGCCGGGTCCAGAACGTCCGGACGGTTGGTGGCGGCGATCAGGATGAT 66758 Query 10861 GCCCGTCTCGTT---ATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTC 10917 ||| ||||| || ||||| |||||||| || || || || | ||| || || Sbjct 66757 GCC---TTCGTTGGCCTCGAAGCCGTCCATCTCGACCAGCAGCTGGTTCAGGGTCTGCTC 66701 Query 10918 GCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATT 10975 ||| || ||||| || || ||| ||||| | || || ||||| ||||| ||| Sbjct 66700 GCGCTCGTCATT-GC-CGCCGCCCAGGCCCGCGCCACGATGGCGGCCGACCGCGTCGATT 66643 Query 10976 TCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACT 11035 || |||||||| | ||| || || || | ||| ||| || || || || || Sbjct 66642 TCGTCGATGAAGATGATGCAGGGGGCGTTATTCTTGGCCTGTTCGAACATGTCGCGCACG 66583 Query 11036 CTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAA 11094 | |||| ||||| || || ||||| || || |||| | ||| | || | || ||| Sbjct 66582 CGGCTGGCGCCGACGCCGACGAACATCTCGACGAAATCCGAACCGG-AGATCGTGAAGAA 66524 Query 11095 GGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 || ||| | || || |||| ||| ||||||| |||||||| || || || || Sbjct 66523 CGGCACGCCCGCCTCGCCGGCGACGGCGCGGGCGATCAGGGTCTTACCGGTGCCGGG 66467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597241155651720