Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq10097 114 2e-20
seq9639 100 3e-16
seq8301 98.7 1e-15
>seq10097
Length=214583
Score = 114 bits (126), Expect = 2e-20
Identities = 280/413 (68%), Gaps = 10/413 (2%)
Strand=Plus/Plus
Query 10774 CACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAAT 10833
|||| || || ||| || ||||| || || || || || ||| |||||| | ||||
Sbjct 47674 CACGACGACCTGACGGTCGAAGCGGCCGGGACGCAGAAGTGCGGGGTCAAGAACATCAGG 47733
Query 10834 GCGGTTCGTCGCCGCGATGACAACGATGCCCGTC--TCGTTATCAAAGCCATCCATCTCA 10891
||||| || || || |||| | ||||||| || ||| || ||||| ||||| ||
Sbjct 47734 ACGGTTGGTGGCGGCAATGAGGATGATGCCC-TCATTCGCC-TCGAAGCCGTCCATTTCG 47791
Query 10892 GTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGG-GCATACCACCCGCACT 10950
|| || || || | || ||||| ||||| || || || || | ||| || |
Sbjct 47792 ACCAGCAGCTGGTTCAGCGTCTGTTCACGTTCGTCGTTACCGCCGCCGAG-ACCGGCGCC 47850
Query 10951 GCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATT-TTCAC 11009
|| || |||||||| || ||||| |||||||| | ||| | || ||| |||
Sbjct 47851 ACGATGGCGGCCGACGGCATCGATTTCGTCGATGAAGATGATGGAGGGCGCATTCTTCTT 47910
Query 11010 GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAA 11069
|| | || | || || || || || | | || ||||| || || ||||||||||| |
Sbjct 47911 GGCCTGCT-CGAACATGTCACGCACACGGCTTGCGCCGACGCCGACGAACATTTCCACGA 47969
Query 11070 AATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCG 11128
||| | ||||| || | || |||||| ||||||| ||| || |||| || || ||
Sbjct 47970 AATCCGAACCGGAA-ATGGTGAAGAAGGGCACGTTGGCTTCGCCAGCGACGGAACGCGCC 48028
Query 11129 AGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGAT 11181
|| || ||||| ||||| || || || |||| || ||||||| || ||
Sbjct 48029 AGCAGCGTCTTACCCGTGCCCGGAGGGCCAACGAGCAGCACACCACGCGGAAT 48081
>seq9639
Length=103419
Score = 100 bits (110), Expect = 3e-16
Identities = 348/538 (65%), Gaps = 10/538 (2%)
Strand=Plus/Minus
Query 10742 ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCT 10801
|||| |||||| ||||| | | ||| || | ||| | || || || || || ||
Sbjct 60855 ATCTGCTCGCGGCCGCGGATATCGGGCAGCGTCACATACACCTGGCGGTCGAAACGGCCG 60796
Query 10802 GGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATG 10861
||||| || || || | || ||||| || ||||| ||||| || | ||| | | |
Sbjct 60795 GGGCGCAGCAGCGCCGCATCCAGGATGTCGGGACGGTTGGTCGCAGCCACGACGATCACG 60736
Query 10862 CCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGT 10921
|| | | | || ||||| |||||||| || | || || | ||| ||||| ||
Sbjct 60735 CCGAGGTTGGTCTCGAAGCCGTCCATCTCGACCAGCATCTGGTTCAGGGTCTGTTCACGC 60676
Query 10922 TCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCAT 10979
||||| || | | ||| || || | ||| || || |||||||| |||||||
Sbjct 60675 TCATCGTTGCCA--CCGCCCAGGCCTGCGCCGCGCTGGCGGCCCACGGCGTCGATTTCAT 60618
Query 10980 CGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCT 11039
||||||| | ||| || ||| ||| | ||| || || || || || || |
Sbjct 60617 CGATGAAGATGATGCAGGGTGCATTCTTCTTGGCGTTCTCGAACATGTCGCGCACGCGGG 60558
Query 11040 TGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGA 11099
|| || || || || ||||||||||| || | || | | || || ||| ||||
Sbjct 60557 CCGCGCCCACGCCGACGAACATTTCCACGAAGTCGGAGCCCGAGATGCTGAAGAACGGGA 60498
Query 11100 CGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTG 11159
| |||| |||||| ||||||| ||| || || ||||| || || || || ||
Sbjct 60497 CCTTGGCTTCACCAGCGATGGACTTGGCCAGCAGCGTCTTGCCGGTACCCGGAGGACCGA 60438
Query 11160 CGAGAAGGGCACCACGTGGGATCCTGGCACC--ACTTC-CAAAGTAGCGCTCAGGTTGTT 11216
| || || |||||| || || | | | || |||| || | | | || | |
Sbjct 60437 CCAGCAGCAGACCACGCGGAATACGGCCGCCGAGCTTCTGGAACTTG---TTGGGGTCCT 60381
Query 11217 TAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCAGCGTCGATGCCTTCAACGTC 11274
| ||||||||||||| ||| | | || ||||| || ||||| |||| |||||||
Sbjct 60380 TCAGGAAGTCCACGACTTCCTTGACCTCTTCCTTGGCTTCGTCGCAGCCTGCAACGTC 60323
>seq8301
Length=73398
Score = 98.7 bits (108), Expect = 1e-15
Identities = 278/417 (67%), Gaps = 14/417 (3%)
Strand=Plus/Minus
Query 10742 ATCTTCTCGCGACCGCGCAC-ACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACC 10800
|||||||||||||||| ||| | |||| || ||| || || || || ||||| ||
Sbjct 66876 ATCTTCTCGCGACCGCCCACGTCCGGGTTCGG-CACCACGACCTGGCGGTCGAAGCGGCC 66818
Query 10801 TGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGAT 10860
|| || || ||||| ||| || | || ||||| || || ||||| | | |||
Sbjct 66817 CGGACGCAGCAGGGCCGGGTCCAGAACGTCCGGACGGTTGGTGGCGGCGATCAGGATGAT 66758
Query 10861 GCCCGTCTCGTT---ATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTC 10917
||| ||||| || ||||| |||||||| || || || || | ||| || ||
Sbjct 66757 GCC---TTCGTTGGCCTCGAAGCCGTCCATCTCGACCAGCAGCTGGTTCAGGGTCTGCTC 66701
Query 10918 GCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATT 10975
||| || ||||| || || ||| ||||| | || || ||||| ||||| |||
Sbjct 66700 GCGCTCGTCATT-GC-CGCCGCCCAGGCCCGCGCCACGATGGCGGCCGACCGCGTCGATT 66643
Query 10976 TCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACT 11035
|| |||||||| | ||| || || || | ||| ||| || || || || ||
Sbjct 66642 TCGTCGATGAAGATGATGCAGGGGGCGTTATTCTTGGCCTGTTCGAACATGTCGCGCACG 66583
Query 11036 CTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAA 11094
| |||| ||||| || || ||||| || || |||| | ||| | || | || |||
Sbjct 66582 CGGCTGGCGCCGACGCCGACGAACATCTCGACGAAATCCGAACCGG-AGATCGTGAAGAA 66524
Query 11095 GGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151
|| ||| | || || |||| ||| ||||||| |||||||| || || || ||
Sbjct 66523 CGGCACGCCCGCCTCGCCGGCGACGGCGCGGGCGATCAGGGTCTTACCGGTGCCGGG 66467
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597241155651720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |