Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq6889 149 6e-31 seq899 114 1e-20 seq3764 113 5e-20 seq504 113 5e-20 seq8560 105 7e-18 seq9853 89.7 5e-13 seq9216 82.4 8e-11 >seq6889 Length=11136585 Score = 149 bits (164), Expect = 6e-31 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || ||||||||||| | | ||||| | ||||| |||||||||||| Sbjct 1034267 GTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 1034326 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || ||||| ||||| || || || || || ||| Sbjct 1034327 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 1034386 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | || | |||||||||||||| ||| Sbjct 1034387 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTT 1034446 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| ||||||||||| Sbjct 1034447 TTCACGAAGATTTGCATTTT 1034466 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || ||||||||||| | | ||||| ||||| |||||||||||| Sbjct 1034039 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCAATCTTCCAGCTGCTTGCCG 1034098 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || ||||| ||||| || || || || || ||| Sbjct 1034099 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 1034158 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || || || || | || | |||||||||||||| || Sbjct 1034159 ACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 1034218 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 1034219 TTCACGAAGATCTGCAT 1034235 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | ||||| ||||| |||||||||||||| | | ||||| | || Sbjct 1033795 AAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATC 1033854 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||||||| | ||||||| ||||||||| || ||||| ||||| || || Sbjct 1033855 TTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATC 1033914 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || ||| || |||| || || | || | || | || Sbjct 1033915 CTGGATCTTGGCCTTCACGTTCTCGGTGGTGTCACTGGGCTCTTCCTCCAGGGTGATGGC 1033974 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| || || ||||| || ||||| Sbjct 1033975 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034007 >seq899 Length=2520420 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | ||||||| | ||||| ||||| || ||| Sbjct 2265344 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 2265403 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || ||| ||||| || || || ||||||||||||||||| || ||| Sbjct 2265404 GCAAAGATCAACCTCTGTTGGTCTGGGGGGATGCCTTCTTTTTCTTGTATCTTCACCTTG 2265463 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| | ||||| || | ||| | ||| || || || | || Sbjct 2265464 ACATTCTCGATGGTGTCACTTGGCTCCACCTCCAGAGTAATGGTTTTACCAGTGAGGGTC 2265523 Query 64427 TTTACGAAAATTTGCATT 64444 ||||| || || |||||| Sbjct 2265524 TTTACAAAGATCTGCATT 2265541 >seq3764 Length=1885950 Score = 113 bits (124), Expect = 5e-20 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| | ||||||||||| || || || |||||||||||||| || | Sbjct 1780318 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 1780259 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | ||||| || |||||||| || | || || | |||||||| |||||| Sbjct 1780258 AAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGA 1780199 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || || || || || ||||||| | | |||||| || || || Sbjct 1780198 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTCCTATTGTATCCGAGGGCTCGACC 1780139 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGC 64441 || | ||| | |||||| || ||| || || |||||||| ||| Sbjct 1780138 TCAAGAGTGATGGTCTTCCCCCTCAGGGTCTTCACGAAAATCTGC 1780094 >seq504 Length=1076656 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64220 CCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACG 64279 || || | ||| | ||||||| ||| || | || |||||||||||||| || | | Sbjct 268501 CCACGAAGTCTCAACACTAGACGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAA 268442 Query 64280 GTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATT 64339 || | | ||||| || |||||||| ||| | || || | |||||||| ||||||||| Sbjct 268441 GTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATT 268382 Query 64340 CCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCT 64399 ||||| || || || || || ||||||| || |||||| || || || || Sbjct 268381 CCTTCCTTATCCTGGATCTTGGGCTTTACGTTTTCTGTTGTATCCGAGGGCTCGACGTCA 268322 Query 64400 ACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | ||| | |||||| || |||| || || |||||||| ||||| || Sbjct 268321 AGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATCTT 268275 >seq8560 Length=3069389 Score = 105 bits (116), Expect = 7e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||||| ||||| || || || |||||||||||||| || | | || || | Sbjct 2390290 TCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCC 2390231 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| | ||||| || ||| | || || | ||||| || |||||||||||||| || Sbjct 2390230 ATCTTCCACTTGCTTTCCAGCAAAGATCAGTCTTTGCTG-TCAGGAGGAATTCCTTCCTT 2390172 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || | ||||| | || | ||||||| || || || | | ||| | Sbjct 2390171 ATCCTGGATCTTGACCATTACATCTTCTATTGTATCAGAGGGCTCGACCTTGAGAGTGAT 2390112 Query 64408 GGTCTTGCCGGTCAA-AGTTTTTACGAAAATTTGCATTTT 64446 |||||| || ||||| ||| || || ||||| ||||| || Sbjct 2390111 GGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCATCTT 2390072 >seq9853 Length=4041771 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| | |||||| || || | || | ||||| || || ||||| |||| Sbjct 359783 CCGCCTCGCAGACGAAGCACCAGGTGCAGGGTGAACTCTTTCTGGATATTGTAGTCTGAC 359842 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || | ||||| ||||||| | || || ||||||||||| || || Sbjct 359843 AGAGTGCGGCCATCCTGCAGCTGTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGGG 359902 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || | ||||| | |||| ||||| ||| || | || |||| || || || Sbjct 359903 ATGCCCTCCTCGTCTTGGA-TTTTGGCTTTGACACTTTCAATGGTGTCACTGGGCTCGAC 359961 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | ||||||||| ||| || || || || || ||||| Sbjct 359962 CTCAAGAGTGATGGTCTTGCCCATCAGCGTCTTCACAAAGATCTGCAT 360009 >seq9216 Length=6899875 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| ||| ||| || | || |||||||||||||| || | | || | | ||||| Sbjct 1291532 CACAAGAGGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTC 1291473 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 || |||||||| ||| | || || | || ||||| ||| |||||||||| || || || Sbjct 1291472 CAGTTGCTTGCCAGCAAAGATCAGTCTTTGGTGGTCAGGAAGAATTCCTTCCTTATCCTG 1291413 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||||||| | | |||||| || | || || | ||| | |||||| Sbjct 1291412 GATCTTGGCCTTTACATTTACTATTGTATCCGAGGGCTTGACCTCAAGAGTGATGGTCTT 1291353 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | |||| || || | |||||| ||||| || Sbjct 1291352 CACTGTCAGGGTCTTCATGAAAATCTGCATCTT 1291320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499550748111960