Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_010355.1
Length=62337
Score E
Sequences producing significant alignments: (Bits) Value
seq6145 134 5e-27
seq6602 102 3e-17
seq1205 93.3 2e-14
seq9425 87.8 7e-13
seq8453 87.8 7e-13
>seq6145
Length=2096
Score = 134 bits (148), Expect = 5e-27
Identities = 230/329 (70%), Gaps = 6/329 (2%)
Strand=Plus/Plus
Query 22291 CGCTTCGTGGCTGATGCGCCGCGCGACGGTCGGCGCGGTCATGCTGCTGAAGGACGGCGA 22350
||||||||| ||| |||||| |||||| ||||||| | | ||||||| |
Sbjct 236 CGCTTCGTGA-TGAACCGCCGC---ACGGTCAGCGCGGTGCGCAAGTTCAAGGACGCGCA 291
Query 22351 CGGCCAGTACATCTGGCGTCCGGGCCTGGAGGCTGGCAAGCCGTCCACCCTGCTCGGCTC 22410
||| | ||||||||| ||| ||| || | ||| || || | | |||||| ||||
Sbjct 292 AGGCAACTACATCTGGAACGCGGCGCTGCAGCCGGGCCAGTCGGCGAGCCTGCTGGGCTT 351
Query 22411 CCCGGTCTATCAGGCTGCGGACATGCCGGCGGTTGGCGCGGGCGCCCTGCCC-ATCGCCT 22469
||||||| || | || |||||| | || | ||| |||| ||||| ||||| |
Sbjct 352 CCCGGTCACCGAGATCGAGGCCATGCCCGATGTCGCCGCCAACGCC-TGCCCGATCGCGT 410
Query 22470 TCGGCAACTTCCGCGCCGGCTACACCGTCGTGGATCGCCTGGGCATCACCGTCCTGCGCG 22529
||||| ||||| ||||| |||| || ||| ||| | || |||||||
Sbjct 411 TCGGCGACTTCGAGAAGGGCTATCTGATCGTCGACCGCGCCGGCGTGCGGGTGCTGCGCG 470
Query 22530 ACCCCTACTCGGCCAAGCCCTTCGTGGAGTTCTACAGCCGGAAGCGCGTCGGCGGCGACG 22589
|||| |||||||||||||| |||| |||||||| |||||||||||||||| ||
Sbjct 471 ACCCGTACTCGGCCAAGCCGCACGTGCTGTTCTACACGACCAAGCGCGTCGGCGGCGGCG 530
Query 22590 TGGTGAACTTCGAAGCCTTCAAGCTGATG 22618
|| ||||||||| || |||||||| ||
Sbjct 531 TGCAGAACTTCGACGCGATCAAGCTGCTG 559
>seq6602
Length=331455
Score = 102 bits (112), Expect = 3e-17
Identities = 116/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 22463 ATCGCCTTCGGCAACTTCCGCGCCGGCTACACCGTCGTGGATCGCCTGGGCATCACCGTC 22522
|||||||||||| | |||||| |||| || |||||| || ||| || | | ||
Sbjct 294975 ATCGCCTTCGGCGATTTCCGCTCCGGTTATCTCGTCGTCGACCGCACCGGTGTGCGCATC 295034
Query 22523 CTGCGCGACCCCTACTCGGCCAAGCCCTTCGTGGAGTTCTACAGCCGGAAGCGCGTCGGC 22582
|||||||| ||||| |||||||| |||| ||| |||||||| | |||||||| ||
Sbjct 295035 CTGCGCGATCCCTATTCGGCCAAACCCTATGTGCTGTTCTACACCACCAAGCGCGTGGGT 295094
Query 22583 GGCGACGTGGTGAACTTCGAAGCCTTCAAGCTGATG 22618
|||| ||| ||| ||||| || |||||||| ||
Sbjct 295095 GGCGGCGTACAGAATTTCGAGGCGATCAAGCTGGTG 295130
>seq1205
Length=48877
Score = 93.3 bits (102), Expect = 2e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 6473 TCGAAAGAATAGAACGACTTGAGGAGGAAAAGAGCGGTCTCCAGGAGGACATCAAGGAAG 6532
|||| | || || || || ||||| || |||| || || || ||||||||||| |
Sbjct 31540 TCGAGCGCATCGAGCGGCTGGAGGAAGAGAAGAAGGGGATCAGCGACGACATCAAGGACG 31599
Query 6533 TCTACTCGGAAGCCAAGGGCACCGGGTTCGACGTCAAGATCATTCGGCAGATCATCCGCT 6592
|||| ||||||||||| ||||| | |||| ||||||||| || ||||||||||||
Sbjct 31600 TCTATCTGGAAGCCAAGGCGACCGGTTACGACCCCAAGATCATGCGCCAGATCATCCGCC 31659
Query 6593 TGCGGAAGATG 6603
|||| || |||
Sbjct 31660 TGCGCAAAATG 31670
>seq9425
Length=520298
Score = 87.8 bits (96), Expect = 7e-13
Identities = 140/199 (70%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 6470 TCGTCGAAAGAATAGAACGACTTGAGGAGGAAAAGAG--CGGTCTCCAGGAGGACATCAA 6527
|| |||| | || || || || ||||| || |||| || || || || ||||||||
Sbjct 45871 TCATCGAGCGCATCGAGCGGCTCGAGGAAGAGAAGAAGACGATCGCC--GACGACATCAA 45814
Query 6528 GGAAGTCTACTCGGAAGCCAAGGGCACCGGGTTCGACGTCAAGATCATTCGGCAGATCAT 6587
||| ||||| ||||||||||||| || || |||||| |||| || || | | |
Sbjct 45813 GGACGTCTATGCGGAAGCCAAGGGTACGGGCTTCGACACCAAGGCGATCCGCGCGCTGGT 45754
Query 6588 CCGCTTGCGGAAGATGGACAAGGCCGACCGGCAGGAACAGCGCGCCATCCTCGAAATGTA 6647
||| |||| ||| |||| |||| || ||||||||| | | |||||||| | ||
Sbjct 45753 GCGCCTGCGCAAGCAGGACCAGGCGGAGCGGCAGGAAGAAGAAACGATCCTCGATCTCTA 45694
Query 6648 CGAGGAAGCGCTCGGGATG 6666
| | | |||||||| |||
Sbjct 45693 CAAAGCCGCGCTCGGCATG 45675
>seq8453
Length=106269
Score = 87.8 bits (96), Expect = 7e-13
Identities = 120/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 6456 CCGCCTGAAATCCTTCGTCGAAAGAATAGAACGACTTGAGGAGGAAAAGAGCGGTCTCCA 6515
||||||||| || || |||| | | || || || || ||||| ||| || ||
Sbjct 48711 CCGCCTGAAGACCATCATCGAGCGCGTCGAGCGCCTCGAAGAGGAGAAGGCCGAGGTCAT 48652
Query 6516 GGAGGACATCAAGGAAGTCTACTCGGAAGCCAAGGGCACCGGGTTCGACGTCAAGATCAT 6575
|| |||||||||| || | | | || ||||||||| || |||||||||||| | |
Sbjct 48651 GGCCCACATCAAGGACGTGTTCGCCGAGGCCAAGGGCGAAGGCTTCGACGTCAAGGTGCT 48592
Query 6576 TCGGCAGATCATCCGCTTGCGGAAGATGGACAAGGCCGACCGGCAGGA 6623
|| || |||||||| |||| ||| |||||||||| | || |||||
Sbjct 48591 GCGCAAGGTCATCCGCATGCGCAAGCAGGACAAGGCCAAGCGCCAGGA 48544
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 199317012322302
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |