Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_010355.1 Length=62337 Score E Sequences producing significant alignments: (Bits) Value seq6145 134 5e-27 seq6602 102 3e-17 seq1205 93.3 2e-14 seq9425 87.8 7e-13 seq8453 87.8 7e-13 >seq6145 Length=2096 Score = 134 bits (148), Expect = 5e-27 Identities = 230/329 (70%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 22291 CGCTTCGTGGCTGATGCGCCGCGCGACGGTCGGCGCGGTCATGCTGCTGAAGGACGGCGA 22350 ||||||||| ||| |||||| |||||| ||||||| | | ||||||| | Sbjct 236 CGCTTCGTGA-TGAACCGCCGC---ACGGTCAGCGCGGTGCGCAAGTTCAAGGACGCGCA 291 Query 22351 CGGCCAGTACATCTGGCGTCCGGGCCTGGAGGCTGGCAAGCCGTCCACCCTGCTCGGCTC 22410 ||| | ||||||||| ||| ||| || | ||| || || | | |||||| |||| Sbjct 292 AGGCAACTACATCTGGAACGCGGCGCTGCAGCCGGGCCAGTCGGCGAGCCTGCTGGGCTT 351 Query 22411 CCCGGTCTATCAGGCTGCGGACATGCCGGCGGTTGGCGCGGGCGCCCTGCCC-ATCGCCT 22469 ||||||| || | || |||||| | || | ||| |||| ||||| ||||| | Sbjct 352 CCCGGTCACCGAGATCGAGGCCATGCCCGATGTCGCCGCCAACGCC-TGCCCGATCGCGT 410 Query 22470 TCGGCAACTTCCGCGCCGGCTACACCGTCGTGGATCGCCTGGGCATCACCGTCCTGCGCG 22529 ||||| ||||| ||||| |||| || ||| ||| | || ||||||| Sbjct 411 TCGGCGACTTCGAGAAGGGCTATCTGATCGTCGACCGCGCCGGCGTGCGGGTGCTGCGCG 470 Query 22530 ACCCCTACTCGGCCAAGCCCTTCGTGGAGTTCTACAGCCGGAAGCGCGTCGGCGGCGACG 22589 |||| |||||||||||||| |||| |||||||| |||||||||||||||| || Sbjct 471 ACCCGTACTCGGCCAAGCCGCACGTGCTGTTCTACACGACCAAGCGCGTCGGCGGCGGCG 530 Query 22590 TGGTGAACTTCGAAGCCTTCAAGCTGATG 22618 || ||||||||| || |||||||| || Sbjct 531 TGCAGAACTTCGACGCGATCAAGCTGCTG 559 >seq6602 Length=331455 Score = 102 bits (112), Expect = 3e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 22463 ATCGCCTTCGGCAACTTCCGCGCCGGCTACACCGTCGTGGATCGCCTGGGCATCACCGTC 22522 |||||||||||| | |||||| |||| || |||||| || ||| || | | || Sbjct 294975 ATCGCCTTCGGCGATTTCCGCTCCGGTTATCTCGTCGTCGACCGCACCGGTGTGCGCATC 295034 Query 22523 CTGCGCGACCCCTACTCGGCCAAGCCCTTCGTGGAGTTCTACAGCCGGAAGCGCGTCGGC 22582 |||||||| ||||| |||||||| |||| ||| |||||||| | |||||||| || Sbjct 295035 CTGCGCGATCCCTATTCGGCCAAACCCTATGTGCTGTTCTACACCACCAAGCGCGTGGGT 295094 Query 22583 GGCGACGTGGTGAACTTCGAAGCCTTCAAGCTGATG 22618 |||| ||| ||| ||||| || |||||||| || Sbjct 295095 GGCGGCGTACAGAATTTCGAGGCGATCAAGCTGGTG 295130 >seq1205 Length=48877 Score = 93.3 bits (102), Expect = 2e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 6473 TCGAAAGAATAGAACGACTTGAGGAGGAAAAGAGCGGTCTCCAGGAGGACATCAAGGAAG 6532 |||| | || || || || ||||| || |||| || || || ||||||||||| | Sbjct 31540 TCGAGCGCATCGAGCGGCTGGAGGAAGAGAAGAAGGGGATCAGCGACGACATCAAGGACG 31599 Query 6533 TCTACTCGGAAGCCAAGGGCACCGGGTTCGACGTCAAGATCATTCGGCAGATCATCCGCT 6592 |||| ||||||||||| ||||| | |||| ||||||||| || |||||||||||| Sbjct 31600 TCTATCTGGAAGCCAAGGCGACCGGTTACGACCCCAAGATCATGCGCCAGATCATCCGCC 31659 Query 6593 TGCGGAAGATG 6603 |||| || ||| Sbjct 31660 TGCGCAAAATG 31670 >seq9425 Length=520298 Score = 87.8 bits (96), Expect = 7e-13 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 6470 TCGTCGAAAGAATAGAACGACTTGAGGAGGAAAAGAG--CGGTCTCCAGGAGGACATCAA 6527 || |||| | || || || || ||||| || |||| || || || || |||||||| Sbjct 45871 TCATCGAGCGCATCGAGCGGCTCGAGGAAGAGAAGAAGACGATCGCC--GACGACATCAA 45814 Query 6528 GGAAGTCTACTCGGAAGCCAAGGGCACCGGGTTCGACGTCAAGATCATTCGGCAGATCAT 6587 ||| ||||| ||||||||||||| || || |||||| |||| || || | | | Sbjct 45813 GGACGTCTATGCGGAAGCCAAGGGTACGGGCTTCGACACCAAGGCGATCCGCGCGCTGGT 45754 Query 6588 CCGCTTGCGGAAGATGGACAAGGCCGACCGGCAGGAACAGCGCGCCATCCTCGAAATGTA 6647 ||| |||| ||| |||| |||| || ||||||||| | | |||||||| | || Sbjct 45753 GCGCCTGCGCAAGCAGGACCAGGCGGAGCGGCAGGAAGAAGAAACGATCCTCGATCTCTA 45694 Query 6648 CGAGGAAGCGCTCGGGATG 6666 | | | |||||||| ||| Sbjct 45693 CAAAGCCGCGCTCGGCATG 45675 >seq8453 Length=106269 Score = 87.8 bits (96), Expect = 7e-13 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 6456 CCGCCTGAAATCCTTCGTCGAAAGAATAGAACGACTTGAGGAGGAAAAGAGCGGTCTCCA 6515 ||||||||| || || |||| | | || || || || ||||| ||| || || Sbjct 48711 CCGCCTGAAGACCATCATCGAGCGCGTCGAGCGCCTCGAAGAGGAGAAGGCCGAGGTCAT 48652 Query 6516 GGAGGACATCAAGGAAGTCTACTCGGAAGCCAAGGGCACCGGGTTCGACGTCAAGATCAT 6575 || |||||||||| || | | | || ||||||||| || |||||||||||| | | Sbjct 48651 GGCCCACATCAAGGACGTGTTCGCCGAGGCCAAGGGCGAAGGCTTCGACGTCAAGGTGCT 48592 Query 6576 TCGGCAGATCATCCGCTTGCGGAAGATGGACAAGGCCGACCGGCAGGA 6623 || || |||||||| |||| ||| |||||||||| | || ||||| Sbjct 48591 GCGCAAGGTCATCCGCATGCGCAAGCAGGACAAGGCCAAGCGCCAGGA 48544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 199317012322302