Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_010811.2
Length=231255
Score E
Sequences producing significant alignments: (Bits) Value
seq9463 199 6e-46
seq8424 109 8e-19
seq6602 100 4e-16
seq8939 93.3 6e-14
seq12126 87.8 3e-12
seq7041 86.0 9e-12
seq9538 84.2 3e-11
>seq9463
Length=63583
Score = 199 bits (220), Expect = 6e-46
Identities = 480/717 (67%), Gaps = 12/717 (2%)
Strand=Plus/Minus
Query 41381 CAGCTTGGCACGCTGGGTTCCGGCAACCACTTCATTGAACTGTGCGTGGACCAGTCGCAA 41440
|| || ||||| ||||| |||||||||||||||| || || ||| |||| | | |
Sbjct 40571 CACCTGGGCACCCTGGGGACCGGCAACCACTTCATCGAGCTTTGCCTGGATGAA--GAAG 40514
Query 41441 GACG--TGTGGATCATGCTGCATAGCGGTTCGCGCGGTGTGGGCAACATCATCGGCCGTC 41498
| || | ||| | |||||||| ||| |||||||| ||||||||| |||||
Sbjct 40513 GCCGCCTTTGGGTGATGCTGCACTCCGGCTCGCGCGGGGTGGGCAACCGGTTCGGCTCCT 40454
Query 41499 ACTACATCGAGCGTGCGCAGAAGGAG-TGCGGCATGTGGCACAGCAGCCTGCCGCACAAC 41557
||| | |||| | || || || |||||| ||| || || ||||||| || |
Sbjct 40453 ACTTCGTCGAACTGGCCAAGCGCGACATGCGGCGC-TGGTTCATCAACCTGCCGGACCAA 40395
Query 41558 GATCTCGCGTTCTTCCCTGAGGACACTCCGGGCTTCAATCACTACGTCCTGTCCATGCTG 41617
|| ||||| | | | || ||| || |||||||| ||||| || | | ||
Sbjct 40394 GACCTCGCCTACCTGCCGCAGGGCAGCGAGGGCTTCACCGACTACATCGAGGCGGTGAAC 40335
Query 41618 TGGGCGCAGGACTTCGC--TCGGCAGAATCGTGCGGTGATGTTGCAGATCGTGATCCAAG 41675
||||||||| || ||| ||| || | || | ||||||| || | ||| | |
Sbjct 40334 TGGGCGCAGACCTACGCCCTCGCCA--ACCGCGAGGTGATGATGGACCAGGTGCTGGGCG 40277
Query 41676 CGCTGCGTC-GTCATCTGCCGGCCTTCGAGCTGACGGAAGAGGCGGTGAACTGCCACCAC 41734
|||||||| | | | | |||| | | | | |||||| |||||||||||||||||||
Sbjct 40276 TGCTGCGTCAGGCGT-TCCCGGACCTGGCGACGACGGAGACGGCGGTGAACTGCCACCAC 40218
Query 41735 AACTATTGTGAGCAGGAGAACCACTTCGGGCGCAACGTGTGGGTCACGCGCAAGGGTGCG 41794
||||| | || |||| | |||||||| | |||| ||||| |||||||| |||
Sbjct 40217 AACTACGTCGCGCGGGAGCATCACTTCGGCAAGACGGTGTTCGTCACCCGCAAGGGGGCG 40158
Query 41795 GTTCGTGCACGTGAAGACGATCTGGGGATCATTCCGGGATCCATGGGTACGAAGTCGTAC 41854
|| || || | || | ||| ||||| ||||| || || || ||||| | |||| |
Sbjct 40157 GTGCGGGCCGGCGAGGGCGAACTGGGCATCATCCCCGGCTCGATGGGCGCCCGCTCGTTC 40098
Query 41855 ATCGTCAAGGGCAAGGGCAATCCGCATTCGTACTGCTCGTGCAGTCACGGGGCAGGACGC 41914
||||| |||||||| || || | |||| |||| | ||| ||||| || || ||
Sbjct 40097 ATCGTGCGCGGCAAGGGGAACGCGGACTCGTTCTGCACCTGCTCGCACGGCGCCGGCCGG 40038
Query 41915 CGTATGTCGCGCACCGAGGCCGTCAAGCGATTCACCGTCGAAGACCTCGTGCAGCAGACG 41974
||| |||| ||||||| ||| ||||| || || |||| ||| | ||
Sbjct 40037 GCGATGAGCCGCAACGAGGCCAAGCGGCGCTTCACGGTGGAGGACCACGTCCGCGCCACC 39978
Query 41975 CAGGGTGTTGAATGCCCGAAGACCAAGGAAGTGCTGGATGAAATCCCGGCCGCGTACAAG 42034
|||| || ||||||| ||| | || ||| | || |||| ||| || ||||||
Sbjct 39977 GAGGGCGTCGAATGCCGCAAGGACGCCGAGGTGATCGACGAAACGCCGATGGCCTACAAG 39918
Query 42035 GACATCGATCAGGTGATGCTTGACCAAAGCGATCTGGTGGAAGTCGTTCATACGCTG 42091
|||||||| |||||| | ||| || |||||||| |||| || || |||
Sbjct 39917 GACATCGACGCCGTGATGGCCGCCCAGGCGGACCTGGTGGATATCGTCCACACCCTG 39861
Score = 116 bits (128), Expect = 5e-21
Identities = 121/158 (77%), Gaps = 3/158 (2%)
Strand=Plus/Minus
Query 40955 AACATCACCCGACTGCCCTTCATCCATCCGCACGGCGTCGCGTTGATGCCGGACGCGCAC 41014
||| || || | ||||| |||||||| ||||| | ||| ||||||| |||| ||||
Sbjct 40955 AACGTCGCCAGCCTGCCGTTCATCCACAAGCACG---TGGCGGTGATGCCCGACGTGCAC 40899
Query 41015 GCAGGCATCGGCAGCACGGTAGGATCGGTGATCGCTACGCAAGGTGCCATCATTCCGGCG 41074
||||| ||| ||| || || ||||| ||| | || || || ||||| ||||||
Sbjct 40898 TGGGGCATGGGCGCCACCGTCGGCTCGGTCATCCCGACCGTCGGGGCGATCATCCCGGCG 40839
Query 41075 GCGGTGGGCGTGGACATCGGCTGCGGCATGGTGGCGGT 41112
||||| ||||| |||||||||||||||||| |||||||
Sbjct 40838 GCGGTCGGCGTCGACATCGGCTGCGGCATGATGGCGGT 40801
>seq8424
Length=263062
Score = 109 bits (120), Expect = 8e-19
Identities = 77/86 (90%), Gaps = 3/86 (3%)
Strand=Plus/Plus
Query 186519 GGCTTGCAGATGGTCCGAGTGAGAGGATTCGAACCTCCGACCCCCTGATCCCAAATCAGG 186578
|||||| | ||||| ||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 49801 GGCTTG--GTTGGTCGGAGTGGCAGGATTCGAACCTGCGACCCCCTGATCCCAAATCAGG 49858
Query 186579 TGCGCTAACCAGACTGCGCTACACTC 186604
|||||| ||||| |||||||||||||
Sbjct 49859 TGCGCT-ACCAGGCTGCGCTACACTC 49883
>seq6602
Length=331455
Score = 100 bits (110), Expect = 4e-16
Identities = 80/95 (84%), Gaps = 1/95 (1%)
Strand=Plus/Minus
Query 186519 GGCTTGCAGATGGTCCGAGTGAGAGGATTCGAACCTCCGACCCCCTGATCCCAAATCAGG 186578
||||| || ||||| ||||||||||||||||||||||||||||| |||| || ||
Sbjct 164848 GGCTTCAAGCTGGTCGGAGTGAGAGGATTCGAACCTCCGACCCCCACGTCCCGAACGTGG 164789
Query 186579 TGCGCTAACCAGACTGCGCTACACTCGGTAAACAG 186613
|||||| ||||||||||||||||||| || | |||
Sbjct 164788 TGCGCT-ACCAGACTGCGCTACACTCCGTGACCAG 164755
>seq8939
Length=223461
Score = 93.3 bits (102), Expect = 6e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 186301 TGGAGCGGGCGACGAGACTCGAACTCGCGACATCTTGCTTGGAAGGCAAGAACTCTACCA 186360
||||||||| |||||| ||||||||||||||| | ||||||||||| | ||||||||
Sbjct 268 TGGAGCGGGAGACGAGGGTCGAACTCGCGACATGTAGCTTGGAAGGCTACCGCTCTACCA 327
Query 186361 ACTGAGCTACGCCCGC 186376
|||||||||| |||||
Sbjct 328 ACTGAGCTACTCCCGC 343
>seq12126
Length=13531
Score = 87.8 bits (96), Expect = 3e-12
Identities = 119/161 (74%), Gaps = 4/161 (2%)
Strand=Plus/Minus
Query 41716 GGCGGTGAACTGCCACCACAACTATTGTG-AGCAGGAGAACCACTTCGGGC-GCAACGTG 41773
||||| ||||||||| |||||||| ||| || |||||| ||| ||| | | ||| ||
Sbjct 5630 GGCGGAGAACTGCCATCACAACTAC-GTGCAGAAGGAGACGCACCACGGCCAGGAAC-TG 5573
Query 41774 TGGGTCACGCGCAAGGGTGCGGTTCGTGCACGTGAAGACGATCTGGGGATCATTCCGGGA 41833
||| ||||||||||| ||||| | || || || | ||| ||||| |||||||| ||
Sbjct 5572 CTGGTGACGCGCAAGGGCGCGGTCAGCGCGCGCGAGGGCGAGCTGGGCATCATTCCCGGC 5513
Query 41834 TCCATGGGTACGAAGTCGTACATCGTCAAGGGCAAGGGCAA 41874
|||||| ||| |||||||| |||||||||||
Sbjct 5512 AGCATGGGCACGCGCAGCTACATCGTGCGTGGCAAGGGCAA 5472
>seq7041
Length=191181
Score = 86.0 bits (94), Expect = 9e-12
Identities = 73/86 (85%), Gaps = 3/86 (3%)
Strand=Plus/Plus
Query 186520 GCTTGCAGATGGTCCGAGTGAGAG-GATTCGAACCTCCGACCCCCTGATCCCAAATCAGG 186578
|||| | |||||| ||||| ||| ||||||||| ||||||| ||| ||||||| |||
Sbjct 50060 GCTTTAAAATGGTCGGAGTG-GAGAGATTCGAACTCCCGACCCTCTGGTCCCAAACCAGA 50118
Query 186579 TGCGCTAACCAGACTGCGCTACACTC 186604
||||||| ||||||||||||||||||
Sbjct 50119 TGCGCTA-CCAGACTGCGCTACACTC 50143
>seq9538
Length=646221
Score = 84.2 bits (92), Expect = 3e-11
Identities = 94/124 (76%), Gaps = 9/124 (7%)
Strand=Plus/Minus
Query 200996 CGCGGCCTTGCCGGTGAACGCGGCGAATTGCACGGTGCCACCAATGTCCGCCACGCGCGC 201055
||| |||||||||||||| || ||||||||||| ||| ||| | || | ||
Sbjct 517817 CGCCGCCTTGCCGGTGAAAGCCGCGAATTGCACCTGGCC------GTC-GACATGTTCGG 517765
Query 201056 CGCAATCTCTTGCGCCAGCGTGCTCTTGCCGGTACCTGCGTACCCAAACAGGCGGAAGAT 201115
|| ||| | ||||||||||| |||||||||| || ||||| || ||||||||||| |
Sbjct 517764 CGAAATAGC--GCGCCAGCGTGGTCTTGCCGGTGCCGGCGTAACCGAACAGGCGGAAAAC 517707
Query 201116 CTGC 201119
||||
Sbjct 517706 CTGC 517703
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 739748725332600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |