Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq9463 199 6e-46 seq8424 109 8e-19 seq6602 100 4e-16 seq8939 93.3 6e-14 seq12126 87.8 3e-12 seq7041 86.0 9e-12 seq9538 84.2 3e-11 >seq9463 Length=63583 Score = 199 bits (220), Expect = 6e-46 Identities = 480/717 (67%), Gaps = 12/717 (2%) Strand=Plus/Minus Query 41381 CAGCTTGGCACGCTGGGTTCCGGCAACCACTTCATTGAACTGTGCGTGGACCAGTCGCAA 41440 || || ||||| ||||| |||||||||||||||| || || ||| |||| | | | Sbjct 40571 CACCTGGGCACCCTGGGGACCGGCAACCACTTCATCGAGCTTTGCCTGGATGAA--GAAG 40514 Query 41441 GACG--TGTGGATCATGCTGCATAGCGGTTCGCGCGGTGTGGGCAACATCATCGGCCGTC 41498 | || | ||| | |||||||| ||| |||||||| ||||||||| ||||| Sbjct 40513 GCCGCCTTTGGGTGATGCTGCACTCCGGCTCGCGCGGGGTGGGCAACCGGTTCGGCTCCT 40454 Query 41499 ACTACATCGAGCGTGCGCAGAAGGAG-TGCGGCATGTGGCACAGCAGCCTGCCGCACAAC 41557 ||| | |||| | || || || |||||| ||| || || ||||||| || | Sbjct 40453 ACTTCGTCGAACTGGCCAAGCGCGACATGCGGCGC-TGGTTCATCAACCTGCCGGACCAA 40395 Query 41558 GATCTCGCGTTCTTCCCTGAGGACACTCCGGGCTTCAATCACTACGTCCTGTCCATGCTG 41617 || ||||| | | | || ||| || |||||||| ||||| || | | || Sbjct 40394 GACCTCGCCTACCTGCCGCAGGGCAGCGAGGGCTTCACCGACTACATCGAGGCGGTGAAC 40335 Query 41618 TGGGCGCAGGACTTCGC--TCGGCAGAATCGTGCGGTGATGTTGCAGATCGTGATCCAAG 41675 ||||||||| || ||| ||| || | || | ||||||| || | ||| | | Sbjct 40334 TGGGCGCAGACCTACGCCCTCGCCA--ACCGCGAGGTGATGATGGACCAGGTGCTGGGCG 40277 Query 41676 CGCTGCGTC-GTCATCTGCCGGCCTTCGAGCTGACGGAAGAGGCGGTGAACTGCCACCAC 41734 |||||||| | | | | |||| | | | | |||||| ||||||||||||||||||| Sbjct 40276 TGCTGCGTCAGGCGT-TCCCGGACCTGGCGACGACGGAGACGGCGGTGAACTGCCACCAC 40218 Query 41735 AACTATTGTGAGCAGGAGAACCACTTCGGGCGCAACGTGTGGGTCACGCGCAAGGGTGCG 41794 ||||| | || |||| | |||||||| | |||| ||||| |||||||| ||| Sbjct 40217 AACTACGTCGCGCGGGAGCATCACTTCGGCAAGACGGTGTTCGTCACCCGCAAGGGGGCG 40158 Query 41795 GTTCGTGCACGTGAAGACGATCTGGGGATCATTCCGGGATCCATGGGTACGAAGTCGTAC 41854 || || || | || | ||| ||||| ||||| || || || ||||| | |||| | Sbjct 40157 GTGCGGGCCGGCGAGGGCGAACTGGGCATCATCCCCGGCTCGATGGGCGCCCGCTCGTTC 40098 Query 41855 ATCGTCAAGGGCAAGGGCAATCCGCATTCGTACTGCTCGTGCAGTCACGGGGCAGGACGC 41914 ||||| |||||||| || || | |||| |||| | ||| ||||| || || || Sbjct 40097 ATCGTGCGCGGCAAGGGGAACGCGGACTCGTTCTGCACCTGCTCGCACGGCGCCGGCCGG 40038 Query 41915 CGTATGTCGCGCACCGAGGCCGTCAAGCGATTCACCGTCGAAGACCTCGTGCAGCAGACG 41974 ||| |||| ||||||| ||| ||||| || || |||| ||| | || Sbjct 40037 GCGATGAGCCGCAACGAGGCCAAGCGGCGCTTCACGGTGGAGGACCACGTCCGCGCCACC 39978 Query 41975 CAGGGTGTTGAATGCCCGAAGACCAAGGAAGTGCTGGATGAAATCCCGGCCGCGTACAAG 42034 |||| || ||||||| ||| | || ||| | || |||| ||| || |||||| Sbjct 39977 GAGGGCGTCGAATGCCGCAAGGACGCCGAGGTGATCGACGAAACGCCGATGGCCTACAAG 39918 Query 42035 GACATCGATCAGGTGATGCTTGACCAAAGCGATCTGGTGGAAGTCGTTCATACGCTG 42091 |||||||| |||||| | ||| || |||||||| |||| || || ||| Sbjct 39917 GACATCGACGCCGTGATGGCCGCCCAGGCGGACCTGGTGGATATCGTCCACACCCTG 39861 Score = 116 bits (128), Expect = 5e-21 Identities = 121/158 (77%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 40955 AACATCACCCGACTGCCCTTCATCCATCCGCACGGCGTCGCGTTGATGCCGGACGCGCAC 41014 ||| || || | ||||| |||||||| ||||| | ||| ||||||| |||| |||| Sbjct 40955 AACGTCGCCAGCCTGCCGTTCATCCACAAGCACG---TGGCGGTGATGCCCGACGTGCAC 40899 Query 41015 GCAGGCATCGGCAGCACGGTAGGATCGGTGATCGCTACGCAAGGTGCCATCATTCCGGCG 41074 ||||| ||| ||| || || ||||| ||| | || || || ||||| |||||| Sbjct 40898 TGGGGCATGGGCGCCACCGTCGGCTCGGTCATCCCGACCGTCGGGGCGATCATCCCGGCG 40839 Query 41075 GCGGTGGGCGTGGACATCGGCTGCGGCATGGTGGCGGT 41112 ||||| ||||| |||||||||||||||||| ||||||| Sbjct 40838 GCGGTCGGCGTCGACATCGGCTGCGGCATGATGGCGGT 40801 >seq8424 Length=263062 Score = 109 bits (120), Expect = 8e-19 Identities = 77/86 (90%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 186519 GGCTTGCAGATGGTCCGAGTGAGAGGATTCGAACCTCCGACCCCCTGATCCCAAATCAGG 186578 |||||| | ||||| ||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 49801 GGCTTG--GTTGGTCGGAGTGGCAGGATTCGAACCTGCGACCCCCTGATCCCAAATCAGG 49858 Query 186579 TGCGCTAACCAGACTGCGCTACACTC 186604 |||||| ||||| ||||||||||||| Sbjct 49859 TGCGCT-ACCAGGCTGCGCTACACTC 49883 >seq6602 Length=331455 Score = 100 bits (110), Expect = 4e-16 Identities = 80/95 (84%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 186519 GGCTTGCAGATGGTCCGAGTGAGAGGATTCGAACCTCCGACCCCCTGATCCCAAATCAGG 186578 ||||| || ||||| ||||||||||||||||||||||||||||| |||| || || Sbjct 164848 GGCTTCAAGCTGGTCGGAGTGAGAGGATTCGAACCTCCGACCCCCACGTCCCGAACGTGG 164789 Query 186579 TGCGCTAACCAGACTGCGCTACACTCGGTAAACAG 186613 |||||| ||||||||||||||||||| || | ||| Sbjct 164788 TGCGCT-ACCAGACTGCGCTACACTCCGTGACCAG 164755 >seq8939 Length=223461 Score = 93.3 bits (102), Expect = 6e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 186301 TGGAGCGGGCGACGAGACTCGAACTCGCGACATCTTGCTTGGAAGGCAAGAACTCTACCA 186360 ||||||||| |||||| ||||||||||||||| | ||||||||||| | |||||||| Sbjct 268 TGGAGCGGGAGACGAGGGTCGAACTCGCGACATGTAGCTTGGAAGGCTACCGCTCTACCA 327 Query 186361 ACTGAGCTACGCCCGC 186376 |||||||||| ||||| Sbjct 328 ACTGAGCTACTCCCGC 343 >seq12126 Length=13531 Score = 87.8 bits (96), Expect = 3e-12 Identities = 119/161 (74%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 41716 GGCGGTGAACTGCCACCACAACTATTGTG-AGCAGGAGAACCACTTCGGGC-GCAACGTG 41773 ||||| ||||||||| |||||||| ||| || |||||| ||| ||| | | ||| || Sbjct 5630 GGCGGAGAACTGCCATCACAACTAC-GTGCAGAAGGAGACGCACCACGGCCAGGAAC-TG 5573 Query 41774 TGGGTCACGCGCAAGGGTGCGGTTCGTGCACGTGAAGACGATCTGGGGATCATTCCGGGA 41833 ||| ||||||||||| ||||| | || || || | ||| ||||| |||||||| || Sbjct 5572 CTGGTGACGCGCAAGGGCGCGGTCAGCGCGCGCGAGGGCGAGCTGGGCATCATTCCCGGC 5513 Query 41834 TCCATGGGTACGAAGTCGTACATCGTCAAGGGCAAGGGCAA 41874 |||||| ||| |||||||| ||||||||||| Sbjct 5512 AGCATGGGCACGCGCAGCTACATCGTGCGTGGCAAGGGCAA 5472 >seq7041 Length=191181 Score = 86.0 bits (94), Expect = 9e-12 Identities = 73/86 (85%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 186520 GCTTGCAGATGGTCCGAGTGAGAG-GATTCGAACCTCCGACCCCCTGATCCCAAATCAGG 186578 |||| | |||||| ||||| ||| ||||||||| ||||||| ||| ||||||| ||| Sbjct 50060 GCTTTAAAATGGTCGGAGTG-GAGAGATTCGAACTCCCGACCCTCTGGTCCCAAACCAGA 50118 Query 186579 TGCGCTAACCAGACTGCGCTACACTC 186604 ||||||| |||||||||||||||||| Sbjct 50119 TGCGCTA-CCAGACTGCGCTACACTC 50143 >seq9538 Length=646221 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/124 (76%), Gaps = 9/124 (7%) Strand=Plus/Minus Query 200996 CGCGGCCTTGCCGGTGAACGCGGCGAATTGCACGGTGCCACCAATGTCCGCCACGCGCGC 201055 ||| |||||||||||||| || ||||||||||| ||| ||| | || | || Sbjct 517817 CGCCGCCTTGCCGGTGAAAGCCGCGAATTGCACCTGGCC------GTC-GACATGTTCGG 517765 Query 201056 CGCAATCTCTTGCGCCAGCGTGCTCTTGCCGGTACCTGCGTACCCAAACAGGCGGAAGAT 201115 || ||| | ||||||||||| |||||||||| || ||||| || ||||||||||| | Sbjct 517764 CGAAATAGC--GCGCCAGCGTGGTCTTGCCGGTGCCGGCGTAACCGAACAGGCGGAAAAC 517707 Query 201116 CTGC 201119 |||| Sbjct 517706 CTGC 517703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739748725332600