Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_011103.1 Length=60195 Score E Sequences producing significant alignments: (Bits) Value seq10686 275 2e-69 seq6714 145 3e-30 seq9638 96.9 1e-15 seq8824 91.5 6e-14 >seq10686 Length=31112 Score = 275 bits (304), Expect = 2e-69 Identities = 359/497 (72%), Gaps = 0/497 (0%) Strand=Plus/Minus Query 1519 ATCTGGCACGTAAAGCCGACGTTTTGGCTGCCAGGTGACGCGCTGCGCGAGAAGGCCAAG 1578 |||||| | || || |||||||| ||||| |||||||||| || |||||| || || Sbjct 4338 ATCTGGAATGTGAACCCGACGTTCTGGCTTCCAGGTGACGGATTGAACGAGAAAGCAAAA 4279 Query 1579 GCCGACCGCGTGCCGTATGACGTTTGGCATGGCAACGGCCAGCTTGAAACAACGCCAGGA 1638 || || ||||| || |||||| | ||| | | || || | || | | |||| || Sbjct 4278 GCGGATCGCGTACCCTATGACCTGTGGAAGGCGAATGGGGATCTGGTCGCCGCGCCCGGC 4219 Query 1639 CCGACGGTCGATTATGAGTTCGTCGCGCACCATTTGCGCGGCCTGTTCGATACGCTGGAC 1698 |||||| || ||||| | ||||| | ||||||||| | || |||||| || || Sbjct 4218 AAGACGGTTGACTATGAATATGTCGCTCTGCATTTGCGCAGTCTCTTCGATGACCTAAAC 4159 Query 1699 ATCCGCAAGATTGCCTTCGACCGATGGAACTGGCGGCACCTGAAACCGTGGCTGCAGAAA 1758 ||||||||||||||||| ||||| ||||| ||||| || ||||| || ||||||| || Sbjct 4158 ATCCGCAAGATTGCCTTTGACCGTTGGAATTGGCGCCATCTGAAGCCTTGGCTGCTCAAG 4099 Query 1759 GCGGGTTTCACCGAAGAGCAGCTGGATGGCGATGCTGCGGTATTTGAGCAGTTCGGTCAG 1818 ||||| | | ||||| || |||| |||||| ||||| || |||| | | || ||| Sbjct 4098 GCGGGGGTTGCGGAAGACCAATTGGAGGGCGATAAAGCGGTTTTCGAGCCGATGGGGCAG 4039 Query 1819 GGCTTCGCGTCAATGTCTCCGGCACTTCGGGATCTGGAAAGCCTGATCCTGAACCGGAAG 1878 || ||| ||| ||||||||||| ||||| || || |||||| | | || ||||| ||| Sbjct 4038 GGTTTCCAGTCCATGTCTCCGGCGCTTCGTGACCTCGAAAGCACGCTGCTCAACCGCAAG 3979 Query 1879 ATCGCTCACGGCGGCCATCCGGTTCTCACCATGTGCATGATGAATGCCACCGTGAAGCCG 1938 || || ||||| |||||| | ||| |||| || |||||||| || || Sbjct 3978 ATTGCGCACGGTTCCCATCCTATCCTCGAATGGTGCGCGAGAAATGCCACTGTTCAGAGT 3919 Query 1939 GATCCGAGCGGGAACCGAAAGCTCGACAAGCAAAAATCGCGTGGTCGCATCGATGGCGCC 1998 |||||| ||| ||||||||||| ||| | ||||| | ||| |||||||| ||| Sbjct 3918 GATCCGGCCGGAAACCGAAAGCTTAGCAAACTGAAATCACATGGCCGCATCGACGGCATG 3859 Query 1999 GTTGCTCTTGCGATGGC 2015 ||||| || || ||||| Sbjct 3858 GTTGCCCTGGCTATGGC 3842 >seq6714 Length=1758414 Score = 145 bits (160), Expect = 3e-30 Identities = 378/563 (67%), Gaps = 34/563 (6%) Strand=Plus/Plus Query 43053 GTTCGCGATCTCGACGGAAGAGACTAGATTTTACCTAAACGGCATCTTCCTGCACCTGCA 43112 |||||| ||||| ||||||||||| | | || || |||||||||||||||||| ||| Sbjct 1051800 GTTCGCTATCTCCACGGAAGAGACGCGCTACTATCTCAACGGCATCTTCCTGCACACGCA 1051859 Query 43113 TGAAGACGGCGACTACTTCA---TCCGTGCGGTAGCCACCGACGGACACCGCCTGTCACG 43169 ||| | |||| | | | | | ||| |||| ||||||||||| || |||||| | || Sbjct 1051860 TGAGGTTGGCGGCAAGCTGAAGCTGCGTTCGGTCGCCACCGACGGCCATCGCCTGGCGCG 1051919 Query 43170 -GCATCA--GGCTGCCTATCCCGG--CGAAGATGCATTCAAGGGCGTGATCGTGCCGCGA 43224 || | || || | || || | | |||| | |||| | ||| | ||||| Sbjct 1051920 CGCCGAAATGGACGCGCCGGCGGGTTCGGA-AGGCATGCC-GGGCATCATCATCCCGCGC 1051977 Query 43225 AAAACGGTCGGCCTGCTTCCGAAA--GG--GACTGTGCG--CGTC---------AGCG-- 43267 || || ||| ||| | ||| || ||| | || |||| | || Sbjct 1051978 AAGACCGTCTCGGAGCTGCAGAAGCTGGTCGACGATCCGGACGTCGCGGTGACCACCGAG 1052037 Query 43268 -TCTCAGAAACGAAGATCCGCATTGCGTCTGGTGAATTTGTTCTCACCAGCAAGCTGATC 43326 | || || || ||||||||| | | || | | |||||| |||||||||| Sbjct 1052038 CTGTCCGACACCAAGATCCGCCTCACCATCGGCAGCGTGATCCTCACCTCCAAGCTGATC 1052097 Query 43327 GACGGCACTTTCCCTGACTATCAGCGCGTCATCCCCACCCAGAACGACAAGAAGATCGTC 43386 |||||||| ||||| |||||||||||||||||||| ||| ||||||||| || | || Sbjct 1052098 GACGGCACCTTCCCCGACTATCAGCGCGTCATCCCGACCGGCAACGACAAGCAGCTGGTG 1052157 Query 43387 TTCGGCAGCGATGACATGCGCCAGGCAGC-CTCG--CGCGTCTCTGTGATCTCGTCTGAG 43443 ||| | | | || | ||| ||| || ||| || ||||| ||||| || || Sbjct 1052158 ATCGACCG-GCAGAGCTTCGC--GGCCGCGGTCGACCGTGTCTCCACCATCTCCTCGGAA 1052214 Query 43444 CGTGGCCGCGCGGTGAAGTTATCCTTCGCGGAGGGGGAAGCGAAGCTGGCCGTGAGCAGT 43503 || ||||||||||||||| | || || | ||||| | | || |||| || | || Sbjct 1052215 CGCGGCCGCGCGGTGAAGCTCTCGATCACCGAGGGCCAGGTGACATTGGCGGTCAACAAC 1052274 Query 43504 CCGGAAACCGGAAGCGCCACCGACGAAATCTTCGTGAACTACGATGGCGACCCGATCGAT 43563 || || |||| ||||||||||| ||| | || |||| | |||||||||||| Sbjct 1052275 CCCGATTCCGGCAGCGCCACCGAAGAACTGGCCGCCGACTATGCCTCCGACCCGATCGAG 1052334 Query 43564 ATCGGATTCAACGCGGCCTATCT 43586 || || ||||||||| ||||| Sbjct 1052335 ATAGGCTTCAACGCGCGTTATCT 1052357 >seq9638 Length=13360 Score = 96.9 bits (106), Expect = 1e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 15092 GATCTGCGCAACATGCGCATTTCGTTCTCCGGCATTATCGTGTCA-CCGAGCCTGTACGC 15150 || || ||||||||||| | |||||||| ||||| | || || |||| | | | || Sbjct 6023 GACCTCCGCAACATGCGGGTGTCGTTCTCGGGCATCGTGGTCTCGTCCGATC-TCTTTGC 5965 Query 15151 CTTCAACGCCGCAACGGAGGAGGGCGAGCCTGGCGAGTCCGTCGAGCCA-TTGCCCGATG 15209 ||||||||| || |||||||| ||| || ||| | | ||| |||| |||||| | Sbjct 5964 CTTCAACGCGGCGACGGAGGAAGGCTCACCGGGCAACACGGTCACGCCAGTTGCCCCCGG 5905 Query 15210 AGGGCGTCCCGGTCCCGACGGGCTTCGTTCCGACGATCCAAACGGAAGTCGTTTCTGGCG 15269 || |||||| | || ||||||||||| | | | ||||||||||| ||||| |||| Sbjct 5904 TGG-CGTCCCCATGCCCTCGGGCTTCGTTGCATCCGTGCAAACGGAAGTGGTTTCCGGCG 5846 Query 15270 GCGCCACGGCGGCATTCAT 15288 | || | ||||| |||| Sbjct 5845 GTGCATCTGCGGCTCTCAT 5827 >seq8824 Length=455128 Score = 91.5 bits (100), Expect = 6e-14 Identities = 184/264 (70%), Gaps = 8/264 (3%) Strand=Plus/Plus Query 43318 AAGCTGATCGACGGCACTTTCCCTGACTATCAGCGCGTCATCCCCACCCAGAACGACAAG 43377 ||||||||||||||||| ||||| || || |||||||| ||||| ||| ||||||||| Sbjct 192863 AAGCTGATCGACGGCACCTTCCCGGATTACCAGCGCGTGATCCCGACCGGCAACGACAAG 192922 Query 43378 AAGAT-CGTCTTCGGCAGCGATGACATGCGC-CAGGCAGCCTCGCGCGTCTCTGTGATCT 43435 | || ||| ||| || | ||| | ||| ||||| | | ||||| || || | Sbjct 192923 GAAATGCGT-GTCGATTGCCA-GACCTTCGCACAGGCCGTCGACCGCGTTTCGACCATTT 192980 Query 43436 CGTCTGAGCGTGGCCGCGCGGTGAAGTTATC-CTTCGCGGAGGGGGAAGC-GAAGCTGGC 43493 | || |||||||||||||| |||||| | | ||| | | || ||| || |||| | Sbjct 192981 CTTCCGAGCGTGGCCGCGCCGTGAAGCTGGCGCTTACC--AACGGCCAGCTGACGCTGAC 193038 Query 43494 CGTGAGCAGTCCGGAAACCGGAAGCGCCACCGACGAAATCTTCGTGAACTACGATGGCGA 43553 ||| | || ||||| | ||||| || || || ||| | ||| || || || Sbjct 193039 CGTCAACAACCCGGATTCGGGAAGTGCTACGGAAGAAGTGGCCGTCGGTTATGACAATGA 193098 Query 43554 CCCGATCGATATCGGATTCAACGC 43577 |||| || ||||| |||||||| Sbjct 193099 TTCGATGGAAATCGGCTTCAACGC 193122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192467975638006