Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_011142.1 Length=47453 Score E Sequences producing significant alignments: (Bits) Value seq9795 123 8e-24 >seq9795 Length=220374 Score = 123 bits (136), Expect = 8e-24 Identities = 311/463 (67%), Gaps = 25/463 (5%) Strand=Plus/Minus Query 43480 GTAATGTCTTTTTCTAAAATGCGGTCTGCTTCATCTGCATCATATACACCGCTAAATCCA 43539 |||||||||||||| | ||||| || || |||||| | ||||| | || || ||| Sbjct 198815 GTAATGTCTTTTTCAATGATGCGTTCAGCCTCATCTTCGTCATAGATGCCTGAGAAGCCA 198756 Query 43540 AAAGCGGCACGACCGCAC--TGAATAATCGTTTTGTGGCGAAGAAAGCGTTTAGTGTGTG 43597 ||||| |||| |||| ||||||| | ||| ||||| | | ||||| | ||||| Sbjct 198755 AAAGCTACACG--CGCAGCTTGAATAAGCACTTTATGGCGGTGCATACGTTTTGGGTGTG 198698 Query 43598 TTTGCCATGGACCCGCATAGCTTCCACGCTGATTTTGATATACCTCGTCAAGATATTCAC 43657 | | |||||| ||| || | | || | | ||| || |||| ||||||| Sbjct 198697 TATCCCATGGCGTTGCAAAGTTA----GGTG--TGCGTACTACTTCATCAAAGTATTCAC 198644 Query 43658 GAATCACAGTTGGGCGGGTTCGATCTTTTCGAAATATTTTAACCTCGCACCATTC-TGGC 43716 | | ||| |||| | || ||||| ||| || | || ||| || |||| Sbjct 198643 GTACCACGATTGGCTTTGCACGGTCTTTGCGAGTGATGATGCATTCAATCCACTCATGGC 198584 Query 43717 GCTTTCTTTGCTGACGGCATGGT-TGCAAAT---ACATCAGAATATGAAATTTCCATGCC 43772 ||| |||| | | || || || | | || || ||| || |||||||| Sbjct 198583 AGTTT--TTGC------CTTTGTGTGTAACTGTTAATTCTGAGTATTTAAACTCCATGCC 198532 Query 43773 ATCAAATGCCGGGTGATCATTAATGATACGTAACCATCCATCTACCCCAATAACAGGAAC 43832 ||| ||| ||| || || || ||||| ||| ||| |||||||| |||| ||| ||||| Sbjct 198531 ATCGAATTGCGGATGTTCGTTCATGATGCGTGTCCAGCCATCTACACCAACAACCGGAAC 198472 Query 43833 AATCGATCCTTTATCTGGGTAGGCATAAATCTCTTTTGTCCAAGGG-TTAAGCCCATACT 43891 ||| || |||||||| ||||| |||||||| ||| | ||||| || | ||||| | Sbjct 198471 AATGCCGCCCTTATCTGGATAGGCGTAAATCTC-TTTAACAAAGGGATTTAATCCATATT 198413 Query 43892 GATTGGCAACAATCAATAGCGCTGTCATTTGAGCATCAGATAC 43934 || |||||||||| || || | |||||| |||| ||||| Sbjct 198412 CGTTTGCAACAATCATCAGAGCGGACATTTGCTCATCCGATAC 198370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151700867145570