Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_011142.1
Length=47453
Score E
Sequences producing significant alignments: (Bits) Value
seq9795 123 8e-24
>seq9795
Length=220374
Score = 123 bits (136), Expect = 8e-24
Identities = 311/463 (67%), Gaps = 25/463 (5%)
Strand=Plus/Minus
Query 43480 GTAATGTCTTTTTCTAAAATGCGGTCTGCTTCATCTGCATCATATACACCGCTAAATCCA 43539
|||||||||||||| | ||||| || || |||||| | ||||| | || || |||
Sbjct 198815 GTAATGTCTTTTTCAATGATGCGTTCAGCCTCATCTTCGTCATAGATGCCTGAGAAGCCA 198756
Query 43540 AAAGCGGCACGACCGCAC--TGAATAATCGTTTTGTGGCGAAGAAAGCGTTTAGTGTGTG 43597
||||| |||| |||| ||||||| | ||| ||||| | | ||||| | |||||
Sbjct 198755 AAAGCTACACG--CGCAGCTTGAATAAGCACTTTATGGCGGTGCATACGTTTTGGGTGTG 198698
Query 43598 TTTGCCATGGACCCGCATAGCTTCCACGCTGATTTTGATATACCTCGTCAAGATATTCAC 43657
| | |||||| ||| || | | || | | ||| || |||| |||||||
Sbjct 198697 TATCCCATGGCGTTGCAAAGTTA----GGTG--TGCGTACTACTTCATCAAAGTATTCAC 198644
Query 43658 GAATCACAGTTGGGCGGGTTCGATCTTTTCGAAATATTTTAACCTCGCACCATTC-TGGC 43716
| | ||| |||| | || ||||| ||| || | || ||| || ||||
Sbjct 198643 GTACCACGATTGGCTTTGCACGGTCTTTGCGAGTGATGATGCATTCAATCCACTCATGGC 198584
Query 43717 GCTTTCTTTGCTGACGGCATGGT-TGCAAAT---ACATCAGAATATGAAATTTCCATGCC 43772
||| |||| | | || || || | | || || ||| || ||||||||
Sbjct 198583 AGTTT--TTGC------CTTTGTGTGTAACTGTTAATTCTGAGTATTTAAACTCCATGCC 198532
Query 43773 ATCAAATGCCGGGTGATCATTAATGATACGTAACCATCCATCTACCCCAATAACAGGAAC 43832
||| ||| ||| || || || ||||| ||| ||| |||||||| |||| ||| |||||
Sbjct 198531 ATCGAATTGCGGATGTTCGTTCATGATGCGTGTCCAGCCATCTACACCAACAACCGGAAC 198472
Query 43833 AATCGATCCTTTATCTGGGTAGGCATAAATCTCTTTTGTCCAAGGG-TTAAGCCCATACT 43891
||| || |||||||| ||||| |||||||| ||| | ||||| || | ||||| |
Sbjct 198471 AATGCCGCCCTTATCTGGATAGGCGTAAATCTC-TTTAACAAAGGGATTTAATCCATATT 198413
Query 43892 GATTGGCAACAATCAATAGCGCTGTCATTTGAGCATCAGATAC 43934
|| |||||||||| || || | |||||| |||| |||||
Sbjct 198412 CGTTTGCAACAATCATCAGAGCGGACATTTGCTCATCCGATAC 198370
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151700867145570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |