Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq8824 531 5e-146 seq8424 93.3 4e-14 seq3201 84.2 2e-11 >seq8824 Length=455128 Score = 531 bits (588), Expect = 5e-146 Identities = 693/951 (73%), Gaps = 16/951 (2%) Strand=Plus/Minus Query 155931 CCGCGCCATCAACTGGAACCGCGTGATCGACGAGAAGGACGCGGAGGTGTGGAACCGGCT 155990 |||||| |||||||||||||| | ||||| |||||| || ||||||||||| || Sbjct 416911 CCGCGCGGTCAACTGGAACCGCATCGAGGACGACAAGGACCTCGAAGTGTGGAACCGCCT 416852 Query 155991 GACCAACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCCAGTCGTGGCA 156050 |||| || |||||||||||||| ||| | ||| | ||||||||| ||| || ||| Sbjct 416851 GACCTCGAATTTCTGGCTGCCGGAAAAGGTGCCGCTCTCCAATGACATCCCCTCCTGGGG 416792 Query 156051 CCAGCTGACCGAGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACGATGCT 156110 ||||| |||||||| | | || || || || |||||||| ||||| |||| Sbjct 416791 AACGCTGAAGCCGGAAGAGCAGAAGCTGACGATCCGCGTCTTCACCGGGCTGACATTGCT 416732 Query 156111 GGACACCATCCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCGGA--CGCCATCACCCCG 156168 |||||||||||| | ||||||||| || || || |||| || || || ||| Sbjct 416731 CGACACCATCCAGAACGGCGTCGGCGCCGTGCGCCTGATGGCGGATTCGGCA--ACGCCG 416674 Query 156169 CACGAGGAGGCGGTGTACACCAACATCGCGTTCATGGAGAGCGTGCACGCACGCAGCTAC 156228 || |||||||||||| |||||||| | ||||||||| || ||||| || ||| Sbjct 416673 CATGAGGAGGCGGTGCTTTCCAACATCTCCTTCATGGAGGCTGTCCACGCCCGTTCCTAT 416614 Query 156229 TCGAACATCTTCTCGACGCTGTGCTCCACCAAGGAGATCGACGCCGCGTTCCGCTGGTCG 156288 ||| ||||||||||| |||||| |||| || |||| | || | |||||||| Sbjct 416613 TCGTCGATCTTCTCGACACTGTGCCTCACCCCTGATGTCGATGATGCCTATCGCTGGTCC 416554 Query 156289 GAGGAGAACGCCAACCTGCAGAAGAAGGCTGAGATCGTGCTCAGCTACTACAACGGTGAC 156348 ||||| |||| ||||||| || | | | || | | | | || || ||| Sbjct 416553 GAGGAAAACGAGTTCCTGCAGCGCAAATCGGCGCTCATCATGCGGGAATATGACAGTGGT 416494 Query 156349 GACCCGCTCAAGCGCAAGGTCGCCTCCACGCTGCTGGAGGGCTTCCTGTTCTACAGCGGC 156408 |||||||| ||| ||| ||||| | | | ||||| ||||||||||||| |||| Sbjct 416493 GACCCGCTGAAGAAGAAGATCGCCAGCGTGTTTCTGGAAAGCTTCCTGTTCTATTCCGGC 416434 Query 156409 TTCTACCTGCCGATGTTCTGGTCGTCGCGAGGCAAGCTCACCAACACCGCCGACATGATC 156468 ||||| ||||||||||||||||| || | ||||||||||||||| || || ||||| Sbjct 416433 TTCTATCTGCCGATGTTCTGGTCAAGCCGCGCCAAGCTCACCAACACGGCGGATTTGATC 416374 Query 156469 CGGCTCATCATCCGGGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGAAG 156528 || || |||||||| |||||||||||||||||||| ||||||||||||||||||||| | Sbjct 416373 CGTCTGATCATCCGCGACGAGGCCGTGCACGGCTATTACATCGGCTACAAGTTCCAGCGG 416314 Query 156529 GGCCTGGA----GAAGGAGACCAAGGCCCGCCAGCAGGAACTCAAGGACTACACCTATGA 156584 | |||| || || |||| | ||||| ||||||| | ||| || Sbjct 416313 GCGGTGGATCGGCTCGGTGA-GAAGGAAAG---ACAGGAGATCAAGGATTTTGCCTTCGA 416258 Query 156585 GCTGCTGTTCGAGCTGTTCGACAACGAGCAGGAGTACACCCAGGACCTCTACGACGCCAC 156644 ||||| | ||||| | |||||||||| | | || ||| | ||||| || |||| | Sbjct 416257 CCTGCTTCTGGAGCTTTACGACAACGAGGCGAAATATACCGAAGACCTTTATGACGGCGT 416198 Query 156645 CGGCCAGACCGAGGACGTGAAGAAGTTCCTGCGGTACAACGGCAACAAGGCCCTGCAGAA 156704 ||| | ||| |||||||| ||| ||||||||| ||||||| |||||||||||| ||| Sbjct 416197 CGGTCTGACGGAGGACGTCAAGCAGTTCCTGCATTACAACGCTAACAAGGCCCTGATGAA 416138 Query 156705 CCTGGGCTACGACGCGCTGTT--CAGCCGCAGCGACTGCGACGTCAACCCGGCCATCCTG 156762 ||||||||||| || ||||| | |||| || | |||| ||||| ||||| ||||| Sbjct 416137 TCTGGGCTACGAGGCACTGTTTCCGGCCG-AG-GCCTGCCGGGTCAATCCGGCGATCCTC 416080 Query 156763 AGCGCGCTGTCGCCCGGTGGAGACGAGAACCACGACTTCTTCTCGGGGTCGGGCAGCACG 156822 |||||| |||||| || ||||| ||||||||||||||||| || || ||| | Sbjct 416079 TCCGCGCTCTCGCCCAATGCTGACGAAAACCACGACTTCTTCTCCGGTTCCGGCTCGTCC 416020 Query 156823 TACGTCATGGCCAAGGGTGTGGTCACCGAAGACGACGACTGGGACTTCTGA 156873 || ||||| | ||||| || | |||||| ||||| |||||||| |||||| Sbjct 416019 TATGTCATTGGCAAGGCGGTCGCCACCGAGGACGAGGACTGGGATTTCTGA 415969 >seq8424 Length=263062 Score = 93.3 bits (102), Expect = 4e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| | ||||||| |||||||||| ||||||||||||||| ||| ||| ||||||||| Sbjct 258661 GCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTCAAAT 258602 Query 92675 CCCACTCCCGCCAC 92688 || |||||||| || Sbjct 258601 CCTACTCCCGCAAC 258588 >seq3201 Length=2764 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||| ||||||| |||||||||| ||||||||||||||| ||| | | ||||||||| Sbjct 2462 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCATAGGTTCAAAT 2403 Query 92675 CCCACTCCCGCCAC 92688 || | ||||| || Sbjct 2402 CCTATCCCCGCAAC 2389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526499274433680