Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_011273.1
Length=164602
Score E
Sequences producing significant alignments: (Bits) Value
seq8824 531 5e-146
seq8424 93.3 4e-14
seq3201 84.2 2e-11
>seq8824
Length=455128
Score = 531 bits (588), Expect = 5e-146
Identities = 693/951 (73%), Gaps = 16/951 (2%)
Strand=Plus/Minus
Query 155931 CCGCGCCATCAACTGGAACCGCGTGATCGACGAGAAGGACGCGGAGGTGTGGAACCGGCT 155990
|||||| |||||||||||||| | ||||| |||||| || ||||||||||| ||
Sbjct 416911 CCGCGCGGTCAACTGGAACCGCATCGAGGACGACAAGGACCTCGAAGTGTGGAACCGCCT 416852
Query 155991 GACCAACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCCAGTCGTGGCA 156050
|||| || |||||||||||||| ||| | ||| | ||||||||| ||| || |||
Sbjct 416851 GACCTCGAATTTCTGGCTGCCGGAAAAGGTGCCGCTCTCCAATGACATCCCCTCCTGGGG 416792
Query 156051 CCAGCTGACCGAGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACGATGCT 156110
||||| |||||||| | | || || || || |||||||| ||||| ||||
Sbjct 416791 AACGCTGAAGCCGGAAGAGCAGAAGCTGACGATCCGCGTCTTCACCGGGCTGACATTGCT 416732
Query 156111 GGACACCATCCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCGGA--CGCCATCACCCCG 156168
|||||||||||| | ||||||||| || || || |||| || || || |||
Sbjct 416731 CGACACCATCCAGAACGGCGTCGGCGCCGTGCGCCTGATGGCGGATTCGGCA--ACGCCG 416674
Query 156169 CACGAGGAGGCGGTGTACACCAACATCGCGTTCATGGAGAGCGTGCACGCACGCAGCTAC 156228
|| |||||||||||| |||||||| | ||||||||| || ||||| || |||
Sbjct 416673 CATGAGGAGGCGGTGCTTTCCAACATCTCCTTCATGGAGGCTGTCCACGCCCGTTCCTAT 416614
Query 156229 TCGAACATCTTCTCGACGCTGTGCTCCACCAAGGAGATCGACGCCGCGTTCCGCTGGTCG 156288
||| ||||||||||| |||||| |||| || |||| | || | ||||||||
Sbjct 416613 TCGTCGATCTTCTCGACACTGTGCCTCACCCCTGATGTCGATGATGCCTATCGCTGGTCC 416554
Query 156289 GAGGAGAACGCCAACCTGCAGAAGAAGGCTGAGATCGTGCTCAGCTACTACAACGGTGAC 156348
||||| |||| ||||||| || | | | || | | | | || || |||
Sbjct 416553 GAGGAAAACGAGTTCCTGCAGCGCAAATCGGCGCTCATCATGCGGGAATATGACAGTGGT 416494
Query 156349 GACCCGCTCAAGCGCAAGGTCGCCTCCACGCTGCTGGAGGGCTTCCTGTTCTACAGCGGC 156408
|||||||| ||| ||| ||||| | | | ||||| ||||||||||||| ||||
Sbjct 416493 GACCCGCTGAAGAAGAAGATCGCCAGCGTGTTTCTGGAAAGCTTCCTGTTCTATTCCGGC 416434
Query 156409 TTCTACCTGCCGATGTTCTGGTCGTCGCGAGGCAAGCTCACCAACACCGCCGACATGATC 156468
||||| ||||||||||||||||| || | ||||||||||||||| || || |||||
Sbjct 416433 TTCTATCTGCCGATGTTCTGGTCAAGCCGCGCCAAGCTCACCAACACGGCGGATTTGATC 416374
Query 156469 CGGCTCATCATCCGGGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGAAG 156528
|| || |||||||| |||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 416373 CGTCTGATCATCCGCGACGAGGCCGTGCACGGCTATTACATCGGCTACAAGTTCCAGCGG 416314
Query 156529 GGCCTGGA----GAAGGAGACCAAGGCCCGCCAGCAGGAACTCAAGGACTACACCTATGA 156584
| |||| || || |||| | ||||| ||||||| | ||| ||
Sbjct 416313 GCGGTGGATCGGCTCGGTGA-GAAGGAAAG---ACAGGAGATCAAGGATTTTGCCTTCGA 416258
Query 156585 GCTGCTGTTCGAGCTGTTCGACAACGAGCAGGAGTACACCCAGGACCTCTACGACGCCAC 156644
||||| | ||||| | |||||||||| | | || ||| | ||||| || |||| |
Sbjct 416257 CCTGCTTCTGGAGCTTTACGACAACGAGGCGAAATATACCGAAGACCTTTATGACGGCGT 416198
Query 156645 CGGCCAGACCGAGGACGTGAAGAAGTTCCTGCGGTACAACGGCAACAAGGCCCTGCAGAA 156704
||| | ||| |||||||| ||| ||||||||| ||||||| |||||||||||| |||
Sbjct 416197 CGGTCTGACGGAGGACGTCAAGCAGTTCCTGCATTACAACGCTAACAAGGCCCTGATGAA 416138
Query 156705 CCTGGGCTACGACGCGCTGTT--CAGCCGCAGCGACTGCGACGTCAACCCGGCCATCCTG 156762
||||||||||| || ||||| | |||| || | |||| ||||| ||||| |||||
Sbjct 416137 TCTGGGCTACGAGGCACTGTTTCCGGCCG-AG-GCCTGCCGGGTCAATCCGGCGATCCTC 416080
Query 156763 AGCGCGCTGTCGCCCGGTGGAGACGAGAACCACGACTTCTTCTCGGGGTCGGGCAGCACG 156822
|||||| |||||| || ||||| ||||||||||||||||| || || ||| |
Sbjct 416079 TCCGCGCTCTCGCCCAATGCTGACGAAAACCACGACTTCTTCTCCGGTTCCGGCTCGTCC 416020
Query 156823 TACGTCATGGCCAAGGGTGTGGTCACCGAAGACGACGACTGGGACTTCTGA 156873
|| ||||| | ||||| || | |||||| ||||| |||||||| ||||||
Sbjct 416019 TATGTCATTGGCAAGGCGGTCGCCACCGAGGACGAGGACTGGGATTTCTGA 415969
>seq8424
Length=263062
Score = 93.3 bits (102), Expect = 4e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| | ||||||| |||||||||| ||||||||||||||| ||| ||| |||||||||
Sbjct 258661 GCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTCAAAT 258602
Query 92675 CCCACTCCCGCCAC 92688
|| |||||||| ||
Sbjct 258601 CCTACTCCCGCAAC 258588
>seq3201
Length=2764
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||||| ||||||| |||||||||| ||||||||||||||| ||| | | |||||||||
Sbjct 2462 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCATAGGTTCAAAT 2403
Query 92675 CCCACTCCCGCCAC 92688
|| | ||||| ||
Sbjct 2402 CCTATCCCCGCAAC 2389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 526499274433680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |