Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_011287.1 Length=58554 Score E Sequences producing significant alignments: (Bits) Value seq12569 279 2e-70 seq6089 194 6e-45 >seq12569 Length=80069 Score = 279 bits (308), Expect = 2e-70 Identities = 370/513 (72%), Gaps = 18/513 (4%) Strand=Plus/Minus Query 43108 GTGGACCTGATCGTCACCAGCATTCCGTTCTCGAACCACTACGAATACACGCCGAGCTAC 43167 |||| ||||||||||||| || |||||||||| || ||||| || |||||| |||| Sbjct 62698 GTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAGTACGAGTATTCGCCGAACTAC 62639 Query 43168 AACGACTTCGGCCACACCGACGACAACGCCCATTTCTGGGCCCAGATGGACTACCTCACG 43227 ||| ||||| ||||||||||||||||||||||||||| |||||||||| ||| | Sbjct 62638 GCCGATTTCGGACACACCGACGACAACGCCCATTTCTGGCGACAGATGGACTTTCTCGCC 62579 Query 43228 CCGCAACTGCTGCGGGTCCTCGCTCCTGGCCGGATCTATGCCTGCCACGTCAAGGACCGC 43287 ||| | |||||||| || ||||| || |||||| | ||| |||||| |||||||| Sbjct 62578 CCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCGCCATCCACGTGAAGGACCGG 62519 Query 43288 ATCTTGTTCGGCAACGTCACCGGCGCAGGCGTCCCCACCGTCTCCCCGTTCCACGCCGA- 43346 ||| || || | |||||| ||| | | ||||||| ||||||| | ||| Sbjct 62518 ATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACCGTCTACCCGTTCGCGGACGAC 62459 Query 43347 -----GGCGATCTTTCACGGCCGCAAACACGGCTTCGACTACCTCGGC---ATGATCACC 43398 |||| ||| |||||| |||||||| |||||||||| | || || | Sbjct 62458 TGCCGGGCGTGCTT------CCGCAAGGCCGGCTTCGCCTACCTCGGCGAAAAGACCAAC 62405 Query 43399 GTGGTCACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAG 43458 || ||||| || || || || ||||||||||| || |||||||||||| ||||||| Sbjct 62404 CTG---ACCGACGTCGTCCGCGAGAACAACCAGACCTATCGGCTGGGCTGGAGCGAGCAG 62348 Query 43459 TGCAAAGACGCCACCAAGATGGGCGTTGGCTCCCCGGAATACGTTCTGCTGTTCCATAAA 43518 ||||| |||| | ||||||| ||| |||||| | || |||||||||| || Sbjct 62347 TGCAAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAAAAGGTGCTGCTGTTCCGCAAG 62288 Query 43519 CCGCAGACAGACAGGTCGAAGGGATACGCCGACACCCCCGTCACCAAATCCAAGGACGAC 43578 |||| | ||| ||| || || ||||||||| || || | || |||||| | Sbjct 62287 CCGCCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCGGTGTCGAAGGACAAGGATCGC 62228 Query 43579 TACAGCCGTGCCCGTTGGCAGGTGGACGCGCAC 43611 |||||||| || || |||||| | ||||||||| Sbjct 62227 TACAGCCGGGCGCGCTGGCAGCTCGACGCGCAC 62195 Score = 170 bits (188), Expect = 7e-38 Identities = 414/614 (67%), Gaps = 21/614 (3%) Strand=Plus/Minus Query 41248 CACCAGCGCGATCTGGTGCGTTGGGCGGTC-GCCGGGGGTAGGCGCGCGATCTTCGCGGC 41306 || ||||| | |||| | ||||||||| | | || ||| ||| | ||||| || Sbjct 64072 CATCAGCGGGCCATGGTCTGCTGGGCGGTCCGTCTCGGCCGGGC-CGCCCTGTTCGCCGC 64014 Query 41307 GTTCGGCCTGGGCAAGACGGTGATGCAGCTGGAGATCGTGCG---CCTGTCGCTAGCCAA 41363 ||||||||||| || | || | ||| ||||||| | ||| | || ||| || | Sbjct 64013 CTTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGATTGCGCGGATCATG-CGCGAG---A 63958 Query 41364 GCATGGCGGTGGGCGAGGCTTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCA 41423 | ||| ||| ||| ||||||| || ||||| ||||||||| |||||| | Sbjct 63957 TCTC--CGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTCATGCG 63900 Query 41424 CGACGCCAACATGCTGGGCATCGAAACCCGGTTTGTTCGCCGCACAGAAGAAGTCGGCGG 41483 |||||| |||||||||| | |||||| |||| || | || || | | || Sbjct 63899 GGACGCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGAGGCGGACGA 63840 Query 41484 ---CGACGGTATCTACCTCACCAACTACGAGAGCGTTCGCGATGGAAAGCTCGACCCGAC 41540 || || ||||||| ||||||||||||| ||||| || || ||||||||||| | Sbjct 63839 TCCCGGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGACCC-AT 63781 Query 41541 ACTG-TTCACGGCCGTTTCACTCGACGAGGCGAGCGTGCTGC---GCTCGTTCGGGTCCA 41596 ||| ||| ||| || | || |||||||| ||||| |||| ||| ||| |||| Sbjct 63780 CCTGTTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGGCTCCA 63721 Query 41597 AGACGTACCAGTCGTTCCTGGAGCTGTTCGACGGGGTGCCCTACCGGTACGTCGCGACGG 41656 |||| | | |||| || ||||||||| ||| |||| || | |||||| |||| Sbjct 63720 AGACCTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGCCACGG 63661 Query 41657 CCACGCCATCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGTTATCTCGGGGTGA 41716 ||||||| ||||| ||| | || |||||| || ||| ||| | || || |||| Sbjct 63660 CCACGCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGGCGTGA 63601 Query 41717 TGGACACCGGTGCGGCGCTCACGCGTTGGTTCCAGCGGGAC-TCGACCAAGGCGAACAAC 41775 |||| ||| ||| || || | |||| ||| ||| ||| || | || || | Sbjct 63600 TGGATGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCACGCCG-ACGCC 63542 Query 41776 CTCACCCTGTACCCACACAAGACGAACGAGTTTTTCCTGTGGCTCAACACCTGGGCTGCA 41835 ||||||||| |||| ||||| | |||||| | |||||| | | ||||| | Sbjct 63541 CTCACCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGGTGCGCAAGCTGGGGTCTG 63482 Query 41836 TTCGTCCAACGACC 41849 |||||||| || || Sbjct 63481 TTCGTCCAGCGGCC 63468 Score = 91.5 bits (100), Expect = 6e-14 Identities = 157/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 44887 TGCCCCTTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGAATCCTGGCGAG 44946 |||||| ||| ||||| ||||| ||||||||||||| | | || | || ||||| Sbjct 61909 TGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCGAGCCGGGCGAC 61850 Query 44947 TTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCACTGAAACTTGGT 45006 |||||||||| ||||||||||| ||| |||||||| | || || | || | || Sbjct 61849 GTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCATCAAGCACGGG 61790 Query 45007 CGGCGCGGCCGTGGTGTCGAGTTGAATCCCGGCTACTACTTCGATGCTGTCAAGTATCTG 45066 || |||| | | |||| |||| || | ||||| |||| | ||| ||| | | Sbjct 61789 CGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTGTGAAGCACGTC 61730 Query 45067 CAAGCCGAGGAGCGCCAG--CGCGACATGCCGAGCCTGTTCGACCT 45110 | ||| || |||| || ||||| ||||| ||| |||||||| Sbjct 61729 GAGGCCATGGCGCGCGAGATGGCGAC--GCCGACCCTCTTCGACCT 61686 >seq6089 Length=13452 Score = 194 bits (214), Expect = 6e-45 Identities = 429/629 (68%), Gaps = 36/629 (6%) Strand=Plus/Minus Query 41248 CACCAGCGCGATCTGGTGCGTTGGGCGGTCGCCGGGGGTAGGCGCGCGATCTTCGCGGCG 41307 |||||| ||| ||||| || ||||| |||| || || | |||||||||||||| ||| Sbjct 4773 CACCAGGCCGAGCTGGTCCGGTGGGCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCG 4714 Query 41308 TTCGGCCTGGGCAAGACGGTGATGCAGCTGGAGATCGTGCGCCTG--TCGCTAGCCAAGC 41365 ||||||||||||||| |||| ||||||||||||||| |||||| | | || ||| ||| Sbjct 4713 TTCGGCCTGGGCAAGTCGGTCATGCAGCTGGAGATCATGCGCCAGCTTGGC--GCCCAGC 4656 Query 41366 ATGGCGGTGGGCGAGGCTTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCACG 41425 ||||| ||| || ||||||| |||||||| ||||| |||||| ||| | || Sbjct 4655 TGGGCGGCCGGC-AG--CTGATCGTCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCG 4599 Query 41426 ACGCCAACATGCTGGGCATCGAAACCCGGTTT--GTTCGCCGCACAG--AAGAAGTCG-- 41479 |||| ||||||||| | | | ||| ||| | ||| | || | ||| ||| Sbjct 4598 ACGCGCTGATGCTGGGCCTGG--ATCCGATTTTCATCCGCAGTACGGCCGAGATCTCGCT 4541 Query 41480 ----GCGG------CGA-CGG---TATCTACCTCACCAACTACGAGAGCGTTCGCGATGG 41525 |||| ||| ||| | ||||| |||||||| || || ||||| || Sbjct 4540 GCATGCGGATCGGCCGAGCGGGCAGCTGTACCTGACCAACTATGAATCTGTCCGCGAAGG 4481 Query 41526 AAAGCTCGACCCGACACTGTTCACGGCCGTTTCACTCGACGAGGCGAGCGTG-CTGCGCT 41584 ||| |||||| ||| | |||| |||| || || ||||| || | |||| |||||| Sbjct 4480 CAAGATCGACCTGACGCATTTCAATGCCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCG 4422 Query 41585 CGTT---CGGGTCCAAGACGTACCAGTCGTTCCTGGAGCTGTTCGACGGGGTGCCCTACC 41641 || ||| ||||||| | || |||| || |||||||||||| ||| || Sbjct 4421 GTTTTGGCGGCACCAAGACCTTCCGCGAGTTCATGCGGCTGTTCGACGGCATGCAATATA 4362 Query 41642 GGTACGTCGCGACGGCCACGCCATCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGG 41701 || ||||| ||||||||||| ||||||||| || | |||||| | ||| || | Sbjct 4361 AGTTTGTCGCCACGGCCACGCCGTCGCCGAACGACTATATCGAGCTGCTGGCCTATGCCG 4302 Query 41702 GTTATCTCGGGGTGATGGACACCGGTGCGGCGCTCACGCGTTGGTTCCAGCGGGAC-TCG 41760 | || | | | ||||| ||| ||| || || | ||| ||||| || || Sbjct 4301 CCTTCCTGGAGATCATGGATGTCGGCCAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCG 4242 Query 41761 ACCAAGGCGAACAACCTCACCCTGTACCCACACAAGACGAACGAGTTTTTCCTGTGGCTC 41820 | ||||| || | || ||| | | || |||||| | || || | |||||| | Sbjct 4241 A-GAAGGCCGACGAACTGACCATCCATCCGCACAAGGAAGAGGAATTCTGGCTGTGGGTG 4183 Query 41821 AACACCTGGGCTGCATTCGTCCAACGACC 41849 || | |||||| ||||||||||| || || Sbjct 4182 AATAGCTGGGCCGCATTCGTCCAGCGGCC 4154 Score = 181 bits (200), Expect = 4e-41 Identities = 318/459 (69%), Gaps = 12/459 (3%) Strand=Plus/Minus Query 43113 CCTGATCGTCACCAGCATTCCGTTCTCGAACCACTACGAATACACGCCGAGCTACAACGA 43172 |||||| ||||||||| | || || | ||| || ||||| |||||||||| || || Sbjct 3376 CCTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGA 3317 Query 43173 CTTCGGCCACACCGACGACAACGCCCATTTCTGGGCCCAGATGGACTACCTCACGCCGCA 43232 |||||||| |||||||| || |||||||| || ||||||||||| || ||||| | Sbjct 3316 TTTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGA 3257 Query 43233 ACTGCTGCGGGTCCTCGCTCCTGGCCGGATCTATGCCTGCCACGTCAAGGACCGCATCTT 43292 |||||||| ||| | || |||||| | || || || ||||| ||| | | Sbjct 3256 GCTGCTGCGCGTCTTGCAGCCGGGCCGGCGCCTGGCGGTGCATGTGAAGGATCGCGT--T 3199 Query 43293 GTTC-----GGCAACGTCACCGGCGCAGGCGTCCCCACCGTCTCCCCGTTCCACGC-CGA 43346 |||| |||| | || || ||| ||| ||| || |||||||| || || Sbjct 3198 GTTCCGTCGGGCA---TGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCGC 3142 Query 43347 GGCGATCTTTCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCAC 43406 || ||| ||| ||| || ||||||| ||| || |||||| | || | ||||| Sbjct 3141 TGC-ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCAC 3083 Query 43407 CGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGCAAAGA 43466 |||||| || || || || || || |||||||||||| ||||||||||||| || Sbjct 3082 CGATGTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGGA 3023 Query 43467 CGCCACCAAGATGGGCGTTGGCTCCCCGGAATACGTTCTGCTGTTCCATAAACCGCAGAC 43526 |||| | |||||||| ||| || ||||| | || ||||||| || |||| ||| Sbjct 3022 TGCCAGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGAC 2963 Query 43527 AGACAGGTCGAAGGGATACGCCGACACCCCCGTCACCAA 43565 ||| || || || || ||||| || |||||||| Sbjct 2962 CGACCGGAGCAACGGCTATGCCGATGTGCCGGTCACCAA 2924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187217714687128