Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_011287.1
Length=58554
Score E
Sequences producing significant alignments: (Bits) Value
seq12569 279 2e-70
seq6089 194 6e-45
>seq12569
Length=80069
Score = 279 bits (308), Expect = 2e-70
Identities = 370/513 (72%), Gaps = 18/513 (4%)
Strand=Plus/Minus
Query 43108 GTGGACCTGATCGTCACCAGCATTCCGTTCTCGAACCACTACGAATACACGCCGAGCTAC 43167
|||| ||||||||||||| || |||||||||| || ||||| || |||||| ||||
Sbjct 62698 GTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAGTACGAGTATTCGCCGAACTAC 62639
Query 43168 AACGACTTCGGCCACACCGACGACAACGCCCATTTCTGGGCCCAGATGGACTACCTCACG 43227
||| ||||| ||||||||||||||||||||||||||| |||||||||| ||| |
Sbjct 62638 GCCGATTTCGGACACACCGACGACAACGCCCATTTCTGGCGACAGATGGACTTTCTCGCC 62579
Query 43228 CCGCAACTGCTGCGGGTCCTCGCTCCTGGCCGGATCTATGCCTGCCACGTCAAGGACCGC 43287
||| | |||||||| || ||||| || |||||| | ||| |||||| ||||||||
Sbjct 62578 CCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCGCCATCCACGTGAAGGACCGG 62519
Query 43288 ATCTTGTTCGGCAACGTCACCGGCGCAGGCGTCCCCACCGTCTCCCCGTTCCACGCCGA- 43346
||| || || | |||||| ||| | | ||||||| ||||||| | |||
Sbjct 62518 ATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACCGTCTACCCGTTCGCGGACGAC 62459
Query 43347 -----GGCGATCTTTCACGGCCGCAAACACGGCTTCGACTACCTCGGC---ATGATCACC 43398
|||| ||| |||||| |||||||| |||||||||| | || || |
Sbjct 62458 TGCCGGGCGTGCTT------CCGCAAGGCCGGCTTCGCCTACCTCGGCGAAAAGACCAAC 62405
Query 43399 GTGGTCACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAG 43458
|| ||||| || || || || ||||||||||| || |||||||||||| |||||||
Sbjct 62404 CTG---ACCGACGTCGTCCGCGAGAACAACCAGACCTATCGGCTGGGCTGGAGCGAGCAG 62348
Query 43459 TGCAAAGACGCCACCAAGATGGGCGTTGGCTCCCCGGAATACGTTCTGCTGTTCCATAAA 43518
||||| |||| | ||||||| ||| |||||| | || |||||||||| ||
Sbjct 62347 TGCAAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAAAAGGTGCTGCTGTTCCGCAAG 62288
Query 43519 CCGCAGACAGACAGGTCGAAGGGATACGCCGACACCCCCGTCACCAAATCCAAGGACGAC 43578
|||| | ||| ||| || || ||||||||| || || | || |||||| |
Sbjct 62287 CCGCCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCGGTGTCGAAGGACAAGGATCGC 62228
Query 43579 TACAGCCGTGCCCGTTGGCAGGTGGACGCGCAC 43611
|||||||| || || |||||| | |||||||||
Sbjct 62227 TACAGCCGGGCGCGCTGGCAGCTCGACGCGCAC 62195
Score = 170 bits (188), Expect = 7e-38
Identities = 414/614 (67%), Gaps = 21/614 (3%)
Strand=Plus/Minus
Query 41248 CACCAGCGCGATCTGGTGCGTTGGGCGGTC-GCCGGGGGTAGGCGCGCGATCTTCGCGGC 41306
|| ||||| | |||| | ||||||||| | | || ||| ||| | ||||| ||
Sbjct 64072 CATCAGCGGGCCATGGTCTGCTGGGCGGTCCGTCTCGGCCGGGC-CGCCCTGTTCGCCGC 64014
Query 41307 GTTCGGCCTGGGCAAGACGGTGATGCAGCTGGAGATCGTGCG---CCTGTCGCTAGCCAA 41363
||||||||||| || | || | ||| ||||||| | ||| | || ||| || |
Sbjct 64013 CTTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGATTGCGCGGATCATG-CGCGAG---A 63958
Query 41364 GCATGGCGGTGGGCGAGGCTTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCA 41423
| ||| ||| ||| ||||||| || ||||| ||||||||| |||||| |
Sbjct 63957 TCTC--CGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTCATGCG 63900
Query 41424 CGACGCCAACATGCTGGGCATCGAAACCCGGTTTGTTCGCCGCACAGAAGAAGTCGGCGG 41483
|||||| |||||||||| | |||||| |||| || | || || | | ||
Sbjct 63899 GGACGCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGAGGCGGACGA 63840
Query 41484 ---CGACGGTATCTACCTCACCAACTACGAGAGCGTTCGCGATGGAAAGCTCGACCCGAC 41540
|| || ||||||| ||||||||||||| ||||| || || ||||||||||| |
Sbjct 63839 TCCCGGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGACCC-AT 63781
Query 41541 ACTG-TTCACGGCCGTTTCACTCGACGAGGCGAGCGTGCTGC---GCTCGTTCGGGTCCA 41596
||| ||| ||| || | || |||||||| ||||| |||| ||| ||| ||||
Sbjct 63780 CCTGTTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGGCTCCA 63721
Query 41597 AGACGTACCAGTCGTTCCTGGAGCTGTTCGACGGGGTGCCCTACCGGTACGTCGCGACGG 41656
|||| | | |||| || ||||||||| ||| |||| || | |||||| ||||
Sbjct 63720 AGACCTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGCCACGG 63661
Query 41657 CCACGCCATCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGTTATCTCGGGGTGA 41716
||||||| ||||| ||| | || |||||| || ||| ||| | || || ||||
Sbjct 63660 CCACGCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGGCGTGA 63601
Query 41717 TGGACACCGGTGCGGCGCTCACGCGTTGGTTCCAGCGGGAC-TCGACCAAGGCGAACAAC 41775
|||| ||| ||| || || | |||| ||| ||| ||| || | || || |
Sbjct 63600 TGGATGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCACGCCG-ACGCC 63542
Query 41776 CTCACCCTGTACCCACACAAGACGAACGAGTTTTTCCTGTGGCTCAACACCTGGGCTGCA 41835
||||||||| |||| ||||| | |||||| | |||||| | | ||||| |
Sbjct 63541 CTCACCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGGTGCGCAAGCTGGGGTCTG 63482
Query 41836 TTCGTCCAACGACC 41849
|||||||| || ||
Sbjct 63481 TTCGTCCAGCGGCC 63468
Score = 91.5 bits (100), Expect = 6e-14
Identities = 157/226 (69%), Gaps = 4/226 (2%)
Strand=Plus/Minus
Query 44887 TGCCCCTTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGAATCCTGGCGAG 44946
|||||| ||| ||||| ||||| ||||||||||||| | | || | || |||||
Sbjct 61909 TGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCGAGCCGGGCGAC 61850
Query 44947 TTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCACTGAAACTTGGT 45006
|||||||||| ||||||||||| ||| |||||||| | || || | || | ||
Sbjct 61849 GTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCATCAAGCACGGG 61790
Query 45007 CGGCGCGGCCGTGGTGTCGAGTTGAATCCCGGCTACTACTTCGATGCTGTCAAGTATCTG 45066
|| |||| | | |||| |||| || | ||||| |||| | ||| ||| | |
Sbjct 61789 CGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTGTGAAGCACGTC 61730
Query 45067 CAAGCCGAGGAGCGCCAG--CGCGACATGCCGAGCCTGTTCGACCT 45110
| ||| || |||| || ||||| ||||| ||| ||||||||
Sbjct 61729 GAGGCCATGGCGCGCGAGATGGCGAC--GCCGACCCTCTTCGACCT 61686
>seq6089
Length=13452
Score = 194 bits (214), Expect = 6e-45
Identities = 429/629 (68%), Gaps = 36/629 (6%)
Strand=Plus/Minus
Query 41248 CACCAGCGCGATCTGGTGCGTTGGGCGGTCGCCGGGGGTAGGCGCGCGATCTTCGCGGCG 41307
|||||| ||| ||||| || ||||| |||| || || | |||||||||||||| |||
Sbjct 4773 CACCAGGCCGAGCTGGTCCGGTGGGCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCG 4714
Query 41308 TTCGGCCTGGGCAAGACGGTGATGCAGCTGGAGATCGTGCGCCTG--TCGCTAGCCAAGC 41365
||||||||||||||| |||| ||||||||||||||| |||||| | | || ||| |||
Sbjct 4713 TTCGGCCTGGGCAAGTCGGTCATGCAGCTGGAGATCATGCGCCAGCTTGGC--GCCCAGC 4656
Query 41366 ATGGCGGTGGGCGAGGCTTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCACG 41425
||||| ||| || ||||||| |||||||| ||||| |||||| ||| | ||
Sbjct 4655 TGGGCGGCCGGC-AG--CTGATCGTCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCG 4599
Query 41426 ACGCCAACATGCTGGGCATCGAAACCCGGTTT--GTTCGCCGCACAG--AAGAAGTCG-- 41479
|||| ||||||||| | | | ||| ||| | ||| | || | ||| |||
Sbjct 4598 ACGCGCTGATGCTGGGCCTGG--ATCCGATTTTCATCCGCAGTACGGCCGAGATCTCGCT 4541
Query 41480 ----GCGG------CGA-CGG---TATCTACCTCACCAACTACGAGAGCGTTCGCGATGG 41525
|||| ||| ||| | ||||| |||||||| || || ||||| ||
Sbjct 4540 GCATGCGGATCGGCCGAGCGGGCAGCTGTACCTGACCAACTATGAATCTGTCCGCGAAGG 4481
Query 41526 AAAGCTCGACCCGACACTGTTCACGGCCGTTTCACTCGACGAGGCGAGCGTG-CTGCGCT 41584
||| |||||| ||| | |||| |||| || || ||||| || | |||| ||||||
Sbjct 4480 CAAGATCGACCTGACGCATTTCAATGCCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCG 4422
Query 41585 CGTT---CGGGTCCAAGACGTACCAGTCGTTCCTGGAGCTGTTCGACGGGGTGCCCTACC 41641
|| ||| ||||||| | || |||| || |||||||||||| ||| ||
Sbjct 4421 GTTTTGGCGGCACCAAGACCTTCCGCGAGTTCATGCGGCTGTTCGACGGCATGCAATATA 4362
Query 41642 GGTACGTCGCGACGGCCACGCCATCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGG 41701
|| ||||| ||||||||||| ||||||||| || | |||||| | ||| || |
Sbjct 4361 AGTTTGTCGCCACGGCCACGCCGTCGCCGAACGACTATATCGAGCTGCTGGCCTATGCCG 4302
Query 41702 GTTATCTCGGGGTGATGGACACCGGTGCGGCGCTCACGCGTTGGTTCCAGCGGGAC-TCG 41760
| || | | | ||||| ||| ||| || || | ||| ||||| || ||
Sbjct 4301 CCTTCCTGGAGATCATGGATGTCGGCCAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCG 4242
Query 41761 ACCAAGGCGAACAACCTCACCCTGTACCCACACAAGACGAACGAGTTTTTCCTGTGGCTC 41820
| ||||| || | || ||| | | || |||||| | || || | |||||| |
Sbjct 4241 A-GAAGGCCGACGAACTGACCATCCATCCGCACAAGGAAGAGGAATTCTGGCTGTGGGTG 4183
Query 41821 AACACCTGGGCTGCATTCGTCCAACGACC 41849
|| | |||||| ||||||||||| || ||
Sbjct 4182 AATAGCTGGGCCGCATTCGTCCAGCGGCC 4154
Score = 181 bits (200), Expect = 4e-41
Identities = 318/459 (69%), Gaps = 12/459 (3%)
Strand=Plus/Minus
Query 43113 CCTGATCGTCACCAGCATTCCGTTCTCGAACCACTACGAATACACGCCGAGCTACAACGA 43172
|||||| ||||||||| | || || | ||| || ||||| |||||||||| || ||
Sbjct 3376 CCTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGA 3317
Query 43173 CTTCGGCCACACCGACGACAACGCCCATTTCTGGGCCCAGATGGACTACCTCACGCCGCA 43232
|||||||| |||||||| || |||||||| || ||||||||||| || ||||| |
Sbjct 3316 TTTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGA 3257
Query 43233 ACTGCTGCGGGTCCTCGCTCCTGGCCGGATCTATGCCTGCCACGTCAAGGACCGCATCTT 43292
|||||||| ||| | || |||||| | || || || ||||| ||| | |
Sbjct 3256 GCTGCTGCGCGTCTTGCAGCCGGGCCGGCGCCTGGCGGTGCATGTGAAGGATCGCGT--T 3199
Query 43293 GTTC-----GGCAACGTCACCGGCGCAGGCGTCCCCACCGTCTCCCCGTTCCACGC-CGA 43346
|||| |||| | || || ||| ||| ||| || |||||||| || ||
Sbjct 3198 GTTCCGTCGGGCA---TGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCGC 3142
Query 43347 GGCGATCTTTCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCAC 43406
|| ||| ||| ||| || ||||||| ||| || |||||| | || | |||||
Sbjct 3141 TGC-ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCAC 3083
Query 43407 CGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGCAAAGA 43466
|||||| || || || || || || |||||||||||| ||||||||||||| ||
Sbjct 3082 CGATGTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGGA 3023
Query 43467 CGCCACCAAGATGGGCGTTGGCTCCCCGGAATACGTTCTGCTGTTCCATAAACCGCAGAC 43526
|||| | |||||||| ||| || ||||| | || ||||||| || |||| |||
Sbjct 3022 TGCCAGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGAC 2963
Query 43527 AGACAGGTCGAAGGGATACGCCGACACCCCCGTCACCAA 43565
||| || || || || ||||| || ||||||||
Sbjct 2962 CGACCGGAGCAACGGCTATGCCGATGTGCCGGTCACCAA 2924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 187217714687128
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