Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 107 2e-18
seq899 93.3 4e-14
seq13960 87.8 2e-12
seq9853 87.8 2e-12
seq8560 82.4 8e-11
>seq8995
Length=8301158
Score = 107 bits (118), Expect = 2e-18
Identities = 159/220 (72%), Gaps = 8/220 (4%)
Strand=Plus/Minus
Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAG 52685
|| ||| ||||||| |||||| || ||||| || |||| | || ||||| |||
Sbjct 6968723 ATAGAACAGGAGTTCCTTACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATT-GCAC 6968665
Query 52686 TCC-ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGC---A 52741
| ||| ||||||||||||| ||||| ||| | || || || |||| |||| |
Sbjct 6968664 TTTGATGAAGCAGTACATCGAGTTCGTGGCAGATAGACTTATGCTGGAGCT-GGGCTTTA 6968606
Query 52742 GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGG 52801
|| ||| ||||| | ||||||||||| |||||| | || ||||| || |||||
Sbjct 6968605 GC--AAGGTTTTCAAAGTAGAAAATCCGTTTGACTTTATGGAAAATATTTCACTGGAGGG 6968548
Query 52802 CAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841
||||| ||||| || |||||| |||| ||||||||| ||
Sbjct 6968547 GAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCAG 6968508
Score = 98.7 bits (108), Expect = 1e-15
Identities = 157/220 (71%), Gaps = 8/220 (4%)
Strand=Plus/Minus
Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAG 52685
|| ||| ||||||| |||||| || ||||| || |||| | || ||||| |||
Sbjct 6971591 ATAGAACAGGAGTTCCTTACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATT-GCAC 6971533
Query 52686 TCC-ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGC---A 52741
| ||| ||||||||||||| ||||| ||| | || || || |||| |||| |
Sbjct 6971532 TTTGATGAAGCAGTACATCGAGTTCGTGGCAGATAGACTTATGCTGGAGCT-GGGCTTTA 6971474
Query 52742 GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGG 52801
|| ||| ||||| | ||||||||||| |||||| | || ||||| || |||||
Sbjct 6971473 GC--AAGGTTTTCAAAGTAGAAAATCCGTTTGACTTTATGGAAAATATTTCACTGGAGGG 6971416
Query 52802 CAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841
||||| ||||| || |||||| |||| ||||| || ||
Sbjct 6971415 GAAGACTAACTTCTTTGAGAAGAGAGTAAGCGAGAATCAG 6971376
>seq899
Length=2520420
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||| || || ||||||||||| || || ||| || || || ||||| |||| |
Sbjct 2265347 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCA 2265406
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| | | ||||||||| || || || |||||||| || || || || |
Sbjct 2265407 AAGATCAACCTCTGTTGGTCTGGGGGGATGCCTTCTTTTTCTTGTATCTTCACCTTGACA 2265466
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||| | | ||||||||| | || | ||||||||||| || || |||
Sbjct 2265467 TTCTCGATGGTGTCACTTGGCTCCACCTCCAGAGTAATGGTTTTACCAGTGAGGGTCTTT 2265526
Query 138601 ACAAAAATCTGCAT 138614
||||| ||||||||
Sbjct 2265527 ACAAAGATCTGCAT 2265540
>seq13960
Length=3940437
Score = 87.8 bits (96), Expect = 2e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 153642 TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTG 153701
|||| ||| || || | ||| |||||||||||||| ||| ||||| || ||||| |||
Sbjct 2057898 TACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGGTTG 2057957
Query 153702 CTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739
|| || ||||| || | |||||| |||||||||||||
Sbjct 2057958 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGG 2057995
>seq9853
Length=4041771
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||||||||||| ||| | || | || | | | |||| || || || ||||||||
Sbjct 359782 GCCGCCTCGCAGACGAAGCACCAGGTGCAGGGTGAACTCTTTCTGGATATTGTAGTCTGA 359841
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| ||| || |||| || ||||| ||||| |||| |||||||| ||||| || ||
Sbjct 359842 CAGAGTGCGGCCATCCTGCAGCTGTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGG 359901
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || | ||| |||||| ||| | ||| | |||||| | | ||| ||
Sbjct 359902 GATGCCCTCCTCGTCTTGGATTTTGGCTTTGACACTTTCAATGGTGTCACTGGGCTCGAC 359961
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || || |||| || || ||||| ||||||||
Sbjct 359962 CTCAAGAGTGATGGTCTTGCCCATCAGCGTCTTCACAAAGATCTGCAT 360009
>seq8560
Length=3069389
Score = 82.4 bits (90), Expect = 8e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461
||| |||||||| | | ||||||||||||||||||||||| || |||||| ||
Sbjct 2390287 CAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 2390228
Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521
|| | ||| || || | | |||| || | || | ||| ||||| || ||||| || ||
Sbjct 2390227 TTCCACTTGCTTTCCAGCAAAGATCAGTCTTTGCT-GTCAGGAGGAATTCCTTCCTTATC 2390169
Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581
||| || ||| | ||| | || || | | ||| |||| || || | ||
Sbjct 2390168 CTGGATCTTGACCATTACATCTTCTATTGTATCAGAGGGCTCGACCTTGAGAGTGATGGT 2390109
Query 138582 TTTACCAGTC-AGAGTTTTTACAAAAATCTGCAT 138614
|| || ||| ||||| || ||||||||||||||
Sbjct 2390108 CTTCCCTGTCAAGAGTCTTCACAAAAATCTGCAT 2390075
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496168984806480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |