Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq8995 107 2e-18 seq899 93.3 4e-14 seq13960 87.8 2e-12 seq9853 87.8 2e-12 seq8560 82.4 8e-11 >seq8995 Length=8301158 Score = 107 bits (118), Expect = 2e-18 Identities = 159/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAG 52685 || ||| ||||||| |||||| || ||||| || |||| | || ||||| ||| Sbjct 6968723 ATAGAACAGGAGTTCCTTACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATT-GCAC 6968665 Query 52686 TCC-ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGC---A 52741 | ||| ||||||||||||| ||||| ||| | || || || |||| |||| | Sbjct 6968664 TTTGATGAAGCAGTACATCGAGTTCGTGGCAGATAGACTTATGCTGGAGCT-GGGCTTTA 6968606 Query 52742 GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGG 52801 || ||| ||||| | ||||||||||| |||||| | || ||||| || ||||| Sbjct 6968605 GC--AAGGTTTTCAAAGTAGAAAATCCGTTTGACTTTATGGAAAATATTTCACTGGAGGG 6968548 Query 52802 CAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841 ||||| ||||| || |||||| |||| ||||||||| || Sbjct 6968547 GAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCAG 6968508 Score = 98.7 bits (108), Expect = 1e-15 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAG 52685 || ||| ||||||| |||||| || ||||| || |||| | || ||||| ||| Sbjct 6971591 ATAGAACAGGAGTTCCTTACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATT-GCAC 6971533 Query 52686 TCC-ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGC---A 52741 | ||| ||||||||||||| ||||| ||| | || || || |||| |||| | Sbjct 6971532 TTTGATGAAGCAGTACATCGAGTTCGTGGCAGATAGACTTATGCTGGAGCT-GGGCTTTA 6971474 Query 52742 GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGG 52801 || ||| ||||| | ||||||||||| |||||| | || ||||| || ||||| Sbjct 6971473 GC--AAGGTTTTCAAAGTAGAAAATCCGTTTGACTTTATGGAAAATATTTCACTGGAGGG 6971416 Query 52802 CAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841 ||||| ||||| || |||||| |||| ||||| || || Sbjct 6971415 GAAGACTAACTTCTTTGAGAAGAGAGTAAGCGAGAATCAG 6971376 >seq899 Length=2520420 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || ||||||||||| || || ||| || || || ||||| |||| | Sbjct 2265347 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCA 2265406 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | | ||||||||| || || || |||||||| || || || || | Sbjct 2265407 AAGATCAACCTCTGTTGGTCTGGGGGGATGCCTTCTTTTTCTTGTATCTTCACCTTGACA 2265466 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||||||||| | || | ||||||||||| || || ||| Sbjct 2265467 TTCTCGATGGTGTCACTTGGCTCCACCTCCAGAGTAATGGTTTTACCAGTGAGGGTCTTT 2265526 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 2265527 ACAAAGATCTGCAT 2265540 >seq13960 Length=3940437 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 153642 TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTG 153701 |||| ||| || || | ||| |||||||||||||| ||| ||||| || ||||| ||| Sbjct 2057898 TACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGGTTG 2057957 Query 153702 CTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 || || ||||| || | |||||| ||||||||||||| Sbjct 2057958 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGG 2057995 >seq9853 Length=4041771 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||||||||||| ||| | || | || | | | |||| || || || |||||||| Sbjct 359782 GCCGCCTCGCAGACGAAGCACCAGGTGCAGGGTGAACTCTTTCTGGATATTGTAGTCTGA 359841 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || |||| || ||||| ||||| |||| |||||||| ||||| || || Sbjct 359842 CAGAGTGCGGCCATCCTGCAGCTGTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGG 359901 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || | ||| |||||| ||| | ||| | |||||| | | ||| || Sbjct 359902 GATGCCCTCCTCGTCTTGGATTTTGGCTTTGACACTTTCAATGGTGTCACTGGGCTCGAC 359961 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || |||| || || ||||| |||||||| Sbjct 359962 CTCAAGAGTGATGGTCTTGCCCATCAGCGTCTTCACAAAGATCTGCAT 360009 >seq8560 Length=3069389 Score = 82.4 bits (90), Expect = 8e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| |||||||| | | ||||||||||||||||||||||| || |||||| || Sbjct 2390287 CAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 2390228 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || | ||| || || | | |||| || | || | ||| ||||| || ||||| || || Sbjct 2390227 TTCCACTTGCTTTCCAGCAAAGATCAGTCTTTGCT-GTCAGGAGGAATTCCTTCCTTATC 2390169 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || ||| | ||| | || || | | ||| |||| || || | || Sbjct 2390168 CTGGATCTTGACCATTACATCTTCTATTGTATCAGAGGGCTCGACCTTGAGAGTGATGGT 2390109 Query 138582 TTTACCAGTC-AGAGTTTTTACAAAAATCTGCAT 138614 || || ||| ||||| || |||||||||||||| Sbjct 2390108 CTTCCCTGTCAAGAGTCTTCACAAAAATCTGCAT 2390075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496168984806480