Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_011589.1 Length=40287 Score E Sequences producing significant alignments: (Bits) Value seq9777 219 1e-52 seq7272 127 5e-25 seq9766 116 1e-21 seq10795 111 4e-20 >seq9777 Length=39614 Score = 219 bits (242), Expect = 1e-52 Identities = 130/136 (96%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 31582 CCAGCACCAGCGCAGCCCATTGCGCGCGGCCCGGCATGCGCGGCTGATCGGCCACAGGGG 31641 ||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||| Sbjct 7298 CCAGCACCAGCGCAGCCCATTTCGCGCGGCGCGGCATGCGCGGCTGATCGCCCACAGGGT 7357 Query 31642 GGCGATGCCGGCCAGTAACCCGGCCAGGGCGAACACGTGGACCATTGCAGCGGTGAGCAG 31701 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 7358 GGCGATGCCGGCCAGGAACCCGGCCAGGGCGAACACGTGGACCATTGCAGCGGTGAGCAG 7417 Query 31702 CTGGTCAGCCATGTGT 31717 ||||||||||||| || Sbjct 7418 CTGGTCAGCCATGGGT 7433 >seq7272 Length=98981 Score = 127 bits (140), Expect = 5e-25 Identities = 277/407 (68%), Gaps = 12/407 (3%) Strand=Plus/Plus Query 1531 TGGCTCGCGTACCCGTTGCAGCATCCGGGTGCCAAGATGAAATCGACCATCGTGATCCAT 1590 ||||| || ||||| |||||||||| || ||||| || || | | ||||| ||| Sbjct 65468 TGGCTGGCCTACCCACTGCAGCATCCCGGCACCAAGCTGCGCACGGCGGTGGTGATGCAT 65527 Query 1591 GGTCCGCAGGGCACCGGCAAGAACATGTTCTTCGATGAGTACATGAA-GC--TTTACGGT 1647 || ||||| | ||||||||| | | ||||| |||| || | ||||| Sbjct 65528 GGCGATGAGGGCGCGGGCAAGAACTTCCTGTTCGACAT---CATGGTCGCCATCTACGGC 65584 Query 1648 GAGTACGGCCGCGTGCTTGACCAGGCCGCCCTAGAAGACAAGTTCAACGATTGGGCAAGC 1707 |||||||| | || | | |||| || || || |||||| |||||||||| ||| Sbjct 65585 AAGTACGGCGCCCTGGTGGGGCAGGACGAGCTGGAGGACAAGCACAACGATTGGCGCAGC 65644 Query 1708 CGCAAGCTGTTCCTGCTGGCCGACGAAGTGGTTGCA--CGCACCGAGGTCTACCACCTCA 1765 ||||||||||| || ||| |||||| ||| | || || ||||| | |||| || Sbjct 65645 TGCAAGCTGTTCGTGGTGGGCGACGAGGTG--TCCAGCCGGGCCGAGCTGGTCCACAACA 65702 Query 1766 AGAACAAGCTCAAGGCGCTGATCACC-GGCGATCGCATCCGCATCAACCCCAAGAACATC 1824 ||||| ||| ||||||||||||||| || || | | |||||||||||| || || Sbjct 65703 AGAACCGGCTGAAGGCGCTGATCACCTCGCCCACG-GTGCAGATCAACCCCAAGCACCTC 65761 Query 1825 CAGGCCTACGAGGAAGACAACCACGCCAACCTGGTCTTCCTCTCAAACGAGGCGATGCCG 1884 | |||||| | |||||| ||| | || |||||||| |||||| | |||| Sbjct 65762 ACGCGGCGCGAGGAGAAGAACCACATGAACATCGTGTTCCTCTCCAACGAGCTGCAGCCG 65821 Query 1885 GTCGTGCTGGAAGAGGATGACCGCCGCCATGCGGTGATCTGGACGCC 1931 | | |||||| | ||||| ||| | |||| ||| ||||| Sbjct 65822 CTGGCGCTGGACAACTCCGACCGGCGCTACCTGGTGGTCTACACGCC 65868 >seq9766 Length=40387 Score = 116 bits (128), Expect = 1e-21 Identities = 82/93 (88%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 29829 CAATAAAAAAGCCCGGAAACCCTTGTGATGCGGGGGTTTCTGGGCTTCTCCGGTCCTTGA 29888 |||||||||||||||||||||| | || || |||| ||||||||||||||||||| Sbjct 37988 CAATAAAAAAGCCCGGAAACCCACGC--TGGTGGAATTTCCGGGCTTCTCCGGTCCTTGA 38045 Query 29889 CGAACCGTTCGTTGGTGGAGGTGGGCCCTACCG 29921 |||||||||||||||||||||||||| |||||| Sbjct 38046 CGAACCGTTCGTTGGTGGAGGTGGGCTCTACCG 38078 >seq10795 Length=12376 Score = 111 bits (122), Expect = 4e-20 Identities = 162/221 (73%), Gaps = 10/221 (5%) Strand=Plus/Minus Query 29698 GGCTTGGCGCGCCTGATGGCTGCGTCGGTCAGAGGCATTGGGGGTATCGC--TTCAGTGG 29755 ||||| ||||| | ||| || |||||||||| ||||| |||||||||| || |||| Sbjct 6582 GGCTTCGCGCGGCGGATCGCGACGTCGGTCAGGGGCAT-GGGGGTATCGGCTTTTCGTGG 6524 Query 29756 GTGCGGTCGGATACCCCTTGATATACCCCCACCGTCTCATGGATTGAAACGGATTGCCCC 29815 | |||| ||||||||| ||||||||||||||||||||| | || |||||| | | Sbjct 6523 G--CGGTGCGATACCCCTAGATATACCCCCACCGTCTCATAGCCTGCAACGGAACGGCAT 6466 Query 29816 GGTCTGCTGCGGACAATAAAAAAGCCCGGAAACCCTTGTGATGCGGGGGTTTCTGGGCTT 29875 || | | ||| || |||||| |||||| ||||| | || ||| ||| ||||| Sbjct 6465 GGACAAGGGTGGAAAACGAAAAAG-CCGGAACCCCTTATTTGACGAGGGATTC-CGGCTT 6408 Query 29876 CTC--CGGTCCTTGACGAACCGTTCGTTGGTGGAGGTGGGC 29914 || | ||||| || ||| | ||||||||||||||| Sbjct 6407 TTCGTGGACCCTTGCGGACCCGGT-ATTGGTGGAGGTGGGC 6368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128773767831742