Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_011589.1
Length=40287
Score E
Sequences producing significant alignments: (Bits) Value
seq9777 219 1e-52
seq7272 127 5e-25
seq9766 116 1e-21
seq10795 111 4e-20
>seq9777
Length=39614
Score = 219 bits (242), Expect = 1e-52
Identities = 130/136 (96%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 31582 CCAGCACCAGCGCAGCCCATTGCGCGCGGCCCGGCATGCGCGGCTGATCGGCCACAGGGG 31641
||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||
Sbjct 7298 CCAGCACCAGCGCAGCCCATTTCGCGCGGCGCGGCATGCGCGGCTGATCGCCCACAGGGT 7357
Query 31642 GGCGATGCCGGCCAGTAACCCGGCCAGGGCGAACACGTGGACCATTGCAGCGGTGAGCAG 31701
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7358 GGCGATGCCGGCCAGGAACCCGGCCAGGGCGAACACGTGGACCATTGCAGCGGTGAGCAG 7417
Query 31702 CTGGTCAGCCATGTGT 31717
||||||||||||| ||
Sbjct 7418 CTGGTCAGCCATGGGT 7433
>seq7272
Length=98981
Score = 127 bits (140), Expect = 5e-25
Identities = 277/407 (68%), Gaps = 12/407 (3%)
Strand=Plus/Plus
Query 1531 TGGCTCGCGTACCCGTTGCAGCATCCGGGTGCCAAGATGAAATCGACCATCGTGATCCAT 1590
||||| || ||||| |||||||||| || ||||| || || | | ||||| |||
Sbjct 65468 TGGCTGGCCTACCCACTGCAGCATCCCGGCACCAAGCTGCGCACGGCGGTGGTGATGCAT 65527
Query 1591 GGTCCGCAGGGCACCGGCAAGAACATGTTCTTCGATGAGTACATGAA-GC--TTTACGGT 1647
|| ||||| | ||||||||| | | ||||| |||| || | |||||
Sbjct 65528 GGCGATGAGGGCGCGGGCAAGAACTTCCTGTTCGACAT---CATGGTCGCCATCTACGGC 65584
Query 1648 GAGTACGGCCGCGTGCTTGACCAGGCCGCCCTAGAAGACAAGTTCAACGATTGGGCAAGC 1707
|||||||| | || | | |||| || || || |||||| |||||||||| |||
Sbjct 65585 AAGTACGGCGCCCTGGTGGGGCAGGACGAGCTGGAGGACAAGCACAACGATTGGCGCAGC 65644
Query 1708 CGCAAGCTGTTCCTGCTGGCCGACGAAGTGGTTGCA--CGCACCGAGGTCTACCACCTCA 1765
||||||||||| || ||| |||||| ||| | || || ||||| | |||| ||
Sbjct 65645 TGCAAGCTGTTCGTGGTGGGCGACGAGGTG--TCCAGCCGGGCCGAGCTGGTCCACAACA 65702
Query 1766 AGAACAAGCTCAAGGCGCTGATCACC-GGCGATCGCATCCGCATCAACCCCAAGAACATC 1824
||||| ||| ||||||||||||||| || || | | |||||||||||| || ||
Sbjct 65703 AGAACCGGCTGAAGGCGCTGATCACCTCGCCCACG-GTGCAGATCAACCCCAAGCACCTC 65761
Query 1825 CAGGCCTACGAGGAAGACAACCACGCCAACCTGGTCTTCCTCTCAAACGAGGCGATGCCG 1884
| |||||| | |||||| ||| | || |||||||| |||||| | ||||
Sbjct 65762 ACGCGGCGCGAGGAGAAGAACCACATGAACATCGTGTTCCTCTCCAACGAGCTGCAGCCG 65821
Query 1885 GTCGTGCTGGAAGAGGATGACCGCCGCCATGCGGTGATCTGGACGCC 1931
| | |||||| | ||||| ||| | |||| ||| |||||
Sbjct 65822 CTGGCGCTGGACAACTCCGACCGGCGCTACCTGGTGGTCTACACGCC 65868
>seq9766
Length=40387
Score = 116 bits (128), Expect = 1e-21
Identities = 82/93 (88%), Gaps = 2/93 (2%)
Strand=Plus/Plus
Query 29829 CAATAAAAAAGCCCGGAAACCCTTGTGATGCGGGGGTTTCTGGGCTTCTCCGGTCCTTGA 29888
|||||||||||||||||||||| | || || |||| |||||||||||||||||||
Sbjct 37988 CAATAAAAAAGCCCGGAAACCCACGC--TGGTGGAATTTCCGGGCTTCTCCGGTCCTTGA 38045
Query 29889 CGAACCGTTCGTTGGTGGAGGTGGGCCCTACCG 29921
|||||||||||||||||||||||||| ||||||
Sbjct 38046 CGAACCGTTCGTTGGTGGAGGTGGGCTCTACCG 38078
>seq10795
Length=12376
Score = 111 bits (122), Expect = 4e-20
Identities = 162/221 (73%), Gaps = 10/221 (5%)
Strand=Plus/Minus
Query 29698 GGCTTGGCGCGCCTGATGGCTGCGTCGGTCAGAGGCATTGGGGGTATCGC--TTCAGTGG 29755
||||| ||||| | ||| || |||||||||| ||||| |||||||||| || ||||
Sbjct 6582 GGCTTCGCGCGGCGGATCGCGACGTCGGTCAGGGGCAT-GGGGGTATCGGCTTTTCGTGG 6524
Query 29756 GTGCGGTCGGATACCCCTTGATATACCCCCACCGTCTCATGGATTGAAACGGATTGCCCC 29815
| |||| ||||||||| ||||||||||||||||||||| | || |||||| | |
Sbjct 6523 G--CGGTGCGATACCCCTAGATATACCCCCACCGTCTCATAGCCTGCAACGGAACGGCAT 6466
Query 29816 GGTCTGCTGCGGACAATAAAAAAGCCCGGAAACCCTTGTGATGCGGGGGTTTCTGGGCTT 29875
|| | | ||| || |||||| |||||| ||||| | || ||| ||| |||||
Sbjct 6465 GGACAAGGGTGGAAAACGAAAAAG-CCGGAACCCCTTATTTGACGAGGGATTC-CGGCTT 6408
Query 29876 CTC--CGGTCCTTGACGAACCGTTCGTTGGTGGAGGTGGGC 29914
|| | ||||| || ||| | |||||||||||||||
Sbjct 6407 TTCGTGGACCCTTGCGGACCCGGT-ATTGGTGGAGGTGGGC 6368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 128773767831742
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |