Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq12661 95.1 1e-14
seq6889 89.7 5e-13
seq8560 84.2 2e-11
>seq12661
Length=3984070
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963
||||| || | || |||||||| || |||||||| || || ||| | ||| ||
Sbjct 2676664 CACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAAAGTGAGGCCATCCTC 2676605
Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023
|||||||| || || |||||| | |||||| || || || ||||||||||||||
Sbjct 2676604 CAGCTGTTTGCCCGCAAAGATCAGACACTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 2676545
Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083
|||||| |||| | || ||||| | |||||| || | ||| | || ||
Sbjct 2676544 GATTTTGGCTTTGACATTCTCAGTAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTT 2676485
Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| ||||| || || ||||| ||||||||
Sbjct 2676484 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 2676455
>seq6889
Length=11136585
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| |||||||| || || |||||||| | ||||| |||| || ||||| || ||
Sbjct 1034039 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCAATCTTCCAGCTGCTTGCCG 1034098
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||| | | |||||| || || || ||||| ||||| ||| ||| || |||
Sbjct 1034099 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 1034158
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| |||||| | ||| || || | ||| | || ||||||||||| ||
Sbjct 1034159 ACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 1034218
Query 127097 TTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 1034219 TTCACGAAGATCTGCAT 1034235
>seq8560
Length=3069389
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| | | || |||||| ||||| | || ||||| |||||||| ||||| || |
Sbjct 2390301 CCACCACAAAGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 2390242
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || | || |||||||| |||||| || ||||| || |||||
Sbjct 2390241 AAAGTACGTCCATCTTCCACTTGCTTTCCAGCAAAGATCAGTCTTTGCTG-TCAGGAGGA 2390183
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| || ||||| ||| ||| || | | | | ||| | || || | ||||||
Sbjct 2390182 ATTCCTTCCTTATCCTGGATCTTGACCATTACATCTTCTATTGTATCAGAGGGCTCGACC 2390123
Query 127067 TCGACGGTCACCGTTTTGCCGGTCA-GAGTTTTTACAAAAATCTGCAT 127113
| || || | || || || |||| |||| || ||||||||||||||
Sbjct 2390122 TTGAGAGTGATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCAT 2390075
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475411292918160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |