Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq504 86.0 6e-12 >seq504 Length=1076656 Score = 86.0 bits (94), Expect = 6e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 45117 CCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACG 45176 || || || |||||||||||| | || || | |||||||| || || || || | Sbjct 268501 CCACGAAGTCTCAACACTAGACGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAA 268442 Query 45177 GTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATG 45236 || ||| |||| ||| || || || | |||| || ||||||||| || ||||| Sbjct 268441 GTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATT 268382 Query 45237 CCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCG 45296 ||||| ||||| || || || | || | |||| || || || | |||||| || Sbjct 268381 CCTTCCTTATCCTGGATCTTGGGCTTTACGTTTTCTGTTGTATCCGAGGGCTCGACGTCA 268322 Query 45297 AGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| | || || || || || || || || ||||| |||||| Sbjct 268321 AGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATC 268277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451918116047640