Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq6590 158 2e-33
seq9575 118 2e-21
>seq6590
Length=8745084
Score = 158 bits (174), Expect = 2e-33
Identities = 177/237 (75%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785
|||||| | | | || || ||||||||||| || |||||||| || || || ||||| ||
Sbjct 4159391 GATTAGCCTACTTGTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAG 4159332
Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845
||||| || || ||||| ||||| | |||||| |||||||| |||||||| | ||| ||
Sbjct 4159331 TACATCACATACTCTGTTATGTTCCCGCAGCCAAATGGTGGCATACATCATCAGACCAGG 4159272
Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905
||| | |||||| || || | ||||| ||||| || | || || | | ||||
Sbjct 4159271 CACCAGACCAAAGACCTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAATATGAGGCGG 4159212
Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962
|| | ||| | ||||| || |||||||| ||||| |||||||| || |||| |||
Sbjct 4159211 GTAGATCATTTCAACCTGAGTATCTTTGACAGTGGGAGGATACATCTCTCCGTTAAT 4159155
Score = 96.9 bits (106), Expect = 5e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||||||||| || | || || ||||||||| ||| || ||||| |||| ||| |||
Sbjct 4157537 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAGCTCTGGTA 4157478
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|||||||| || || ||||| ||||||||||| || |||| || | | || ||
Sbjct 4157477 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCTGTAGTGCACATTATAAGTT 4157418
Query 10507 GGGGGACTGTCAATCA 10522
|| ||||| |||||||
Sbjct 4157417 GGTGGACTCTCAATCA 4157402
Score = 95.1 bits (104), Expect = 2e-14
Identities = 127/177 (72%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180
||| |||||||| | ||| | |||||||| |||||||| | | ||| ||| | ||
Sbjct 4158371 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 4158312
Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240
|||||| || || ||||| || | || || || |||||||| || ||||||||||||||
Sbjct 4158311 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAGATTTGTGCCCTGGGGATC 4158252
Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297
|| || || | || | | || ||||| | ||||| | | | ||||| || ||
Sbjct 4158251 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAACTTCTTTCGAATCAGGAAG 4158195
>seq9575
Length=4383032
Score = 118 bits (130), Expect = 2e-21
Identities = 177/249 (71%), Gaps = 2/249 (1%)
Strand=Plus/Minus
Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992
|| || || || || | || || || || || || || || ||||| | |||||||||
Sbjct 3956530 GTGGCCGTCTTGACAAGGTTGAAGCCCACCTCACCACCAAATGTGCTTGCCTTCCAGTAC 3956471
Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052
| || || |||||| ||| | | ||| || || | |||||| |||||||||| ||
Sbjct 3956470 TCTGGAGAACAGATGGGGTTTCCTAAGAGGCCCTTAAGGGAAAAAGGAGCCCCCATTTCT 3956411
Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111
|| || ||||| || ||||||| ||| | || || | || | |||| | |||
Sbjct 3956410 ATCATACTCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCAA-GAAGTAGCCCCGGGTA 3956352
Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171
|| ||| | ||| |||| ||| ||||| || | |||||||| || || |||||||||||
Sbjct 3956351 GAATTCCAAAGCATCGATGTCTCCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTC 3956292
Query 9172 ACCTACAAG 9180
|||| ||||
Sbjct 3956291 ACCTGCAAG 3956283
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723591767250600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |