Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq7029 165 2e-36 seq12095 134 4e-27 seq9956 122 2e-23 seq12839 109 1e-19 seq6714 96.9 9e-16 seq9622 86.0 2e-12 seq8050 84.2 6e-12 >seq7029 Length=148368 Score = 165 bits (182), Expect = 2e-36 Identities = 469/715 (66%), Gaps = 22/715 (3%) Strand=Plus/Plus Query 8454 CGGACGGCCGTCGATGGGAAAGACCTCCCTCGCAATGAATATCGCAGAGCATGTCGCCAT 8513 || ||| || |||||||| |||||||| | || |||||||||| ||||| || || | Sbjct 76149 CGCACGCCCCTCGATGGGCAAGACCTCGTTTGCGGTGAATATCGCCGAGCACGTGGCGCT 76208 Query 8514 CGTGTCGA--GATTGCCCGTCGGCGTCTTGTCGCTGGAAATGCCGACCGAACAGTTGACC 8571 | ||| | |||| |||| | | || || |||||||| | | ||| || | Sbjct 76209 CAA--CGAAGGCCTGCCGGTCGCCATTTTCTCCATGGAAATGGGCGCGGCCCAGCTGGCG 76266 Query 8572 ATGCGCATGCTGGCGTCGACATCCCGTATCAGCCAAAACAGGCTGCGAACCGGTCGCCTC 8631 |||| || | | || | ||| ||| ||| || ||||| || || ||| Sbjct 76267 GTGCGTATCGTCGGCTCTATCGGCCGCGTCAACCAGGGCAATCTGCGCACGGGCAAGCTC 76326 Query 8632 GAGGATGACGACTGGCCGCGCCTGACGCGTGGCGTCGAGCTGATGGCCGACGCGCCCGTG 8691 | |||||||| ||||||||||||||| | | |||||| | || | | | || || Sbjct 76327 AACGATGACGAGTGGCCGCGCCTGACGGAAGCCATCGAGCGGCTGCGCACGGTGTCCCTG 76386 Query 8692 CATATTCTCGATAGCTCCGCGATCACCCCGTCGAAATTCAAGTCCGAGTTGCGGCGCTTG 8751 || || ||| | ||| | | || || | | || | ||||||| || Sbjct 76387 CACATCGACGAGACGCCCGGCCTGTCGCCTACGGAGCTGCGCGCCAATGCGCGGCGCCTG 76446 Query 8752 TATCGCGAA--TGCGGCCGGCTCGGGATGATTGTCGTTGACTACCTGCAGCTGATG---- 8805 |||| | |||||| ||| || |||| || || ||||| |||||||||||| Sbjct 76447 G--CGCGTACCTGCGGCAAGCTGGGCCTGATCGTGGTCGACTATCTGCAGCTGATGAGCG 76504 Query 8806 --TCGGGTGACGGCGGCGGATCTGAAATGCGGGCCACCGAGGTCGCCGAAATATCGCGCG 8863 |||||| | || | | || || | ||||||| | | ||| || ||||| | Sbjct 76505 GCTCGGGTTCGGCCGCCAGTTCCGACAA------CACCGAGCTGGGCGAGATTTCGCGGG 76558 Query 8864 CACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAATC 8923 | || | || ||||| | | ||| | || || ||||| ||||| || | Sbjct 76559 GCTTGAAGATGCTGGCCAAGGAGTTGCAGTGCCCGGTGATTGCCCTGTCCCAGCTCAACC 76618 Query 8924 GAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGGTG 8983 | | | ||| | ||| | ||||||| ||| | |||||||| |||||||| ||||| | Sbjct 76619 GTTCGGTGGAGCAGCGCACCGACAAGCGCCCCATGATGTCCGACCTGCGCGAATCGGGCG 76678 Query 8984 CGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCGATGAGGTCTATAACCCCG 9043 | |||||||||||||||||| | ||| | || |||||||||||||| ||| ||| | Sbjct 76679 CCATCGAGCAGGATGCCGACATCATCATGTTCATCTACCGCGATGACTACTACAACAAGG 76738 Query 9044 ACAGCGCAGATCGCGGTACGGCCGAAATCATCATTGCGAAGCAGCGAAACGGGCCGATTG 9103 ||||| || | | | |||||| ||||||| | |||||||| ||||| |||| | Sbjct 76739 ACAGCAAGGAGCCCAACATCGCCGAAGTCATCATCGGCAAGCAGCGTAACGGCCCGACCG 76798 Query 9104 GCACCGTACGGCTCGCATTCCAGAACGCAACA-ACCCGGTTCGAGAATTTCGCCG 9157 |||| || ||| |||||||| | || || || |||||||| | |||| Sbjct 76799 GCACGGTCAAGCTGTTCTTCCAGAA-AAACCAGACGCGCTTCGAGAACCTGGCCG 76852 >seq12095 Length=15812 Score = 134 bits (148), Expect = 4e-27 Identities = 222/316 (70%), Gaps = 6/316 (2%) Strand=Plus/Plus Query 8788 GACTACCTGCAGCTGATGTCGGGTGACGGCGGCGGATCTGAAATGCGGGCCACCGAGGTC 8847 |||||||||||||||||| | ||| ||| || |||| || || || || || Sbjct 1370 GACTACCTGCAGCTGATGA-GCGTGCCGG--GCAACAGCGAAAACCGCGCGACTGAAATC 1426 Query 8848 GCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCGCG 8907 | || || ||||| | || || | || |||||||| |||| ||| | |||||| Sbjct 1427 TCGGAGATCTCGCGTTCGCTGAAGGGCCTGGCCAAGGAACTGCACGTGCCGGTGATCGCG 1486 Query 8908 CTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCGAT 8967 || |||||||| || || ||| || | || | ||||||| || || ||| ||||| Sbjct 1487 CTTTCGCAGCTCAACCGCTCGCTGGAAACGCGTACCGACAAGCGCCCGGTAATGGCCGAT 1546 Query 8968 CTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCGAT 9027 || ||||| ||||| || |||||||||||||| ||| ||||| |||| ||||||||||| Sbjct 1547 CTTCGCGAATCGGGCGCAATCGAGCAGGATGCGGACATGATCGTCTTCATCTACCGCGAC 1606 Query 9028 GAGGTCTATAACCCCGACA--GCGCAGATCGCGGTAC-GGCCGAAATCATCATTGCGAAG 9084 || ||| ||| || | ||| | | || | |||||| |||||||| | ||| Sbjct 1607 GATTACTACAACAAGGAAAATTCGCCGGACAAGGGCCTGGCCGAGATCATCATCGGCAAG 1666 Query 9085 CAGCGAAACGGGCCGA 9100 || || ||| |||| Sbjct 1667 CACCGTGGCGGCCCGA 1682 >seq9956 Length=123604 Score = 122 bits (134), Expect = 2e-23 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 8953 CCCGTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTC 9012 ||||| ||||| || | || || || || ||||| ||||| ||||| ||| |||| | Sbjct 100325 CCCGTGATGTCTGACTTACGTGAATCCGGCGCGATTGAGCAAGATGCAGACTTGATTTTG 100266 Query 9013 TTTATCTACCGCGATGAGGTCTATAACCCCGACAGCGCAGATCGCGGTACGGCCGAAATC 9072 ||||||||||| || || || |||||||| |||||| | || || ||||||||||| Sbjct 100265 TTTATCTACCGTGACGAAGTGTATAACCCGGACAGCCCTGACAAAGGGACGGCCGAAATT 100206 Query 9073 ATCATTGCGAAGCAGCGAAACGGGCCGATTGGCACCGTACGGCTC 9117 || |||| |||||||| ||||| |||||||| ||| || ||| Sbjct 100205 ATTATTGGTAAGCAGCGTAACGGCCCGATTGGTCGCGTGCGCCTC 100161 >seq12839 Length=204338 Score = 109 bits (120), Expect = 1e-19 Identities = 169/239 (71%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 8876 TTGCGAAGGAACTCGACGTTCCGA-TCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAG 8934 |||| |||||| | || || || | || || ||||| |||||||| || || || Sbjct 81917 TTGCCAAGGAAAT-GATGTGCCCTGTTATTGCACTGTCACAGCTTAACCGTTCTCTGGAA 81859 Query 8935 AATCGCCCAAACAAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAG 8994 || || ||||| || || || || |||||||| | || || || ||||| ||||||||| Sbjct 81858 AACCGTCCAAATAAACGTCCGGTAATGTCCGACTTACGTGAATCAGGTGCAATCGAGCAG 81799 Query 8995 GATGCCGACGTGATCCTCTTTATCTACCGCGATGAGGTCTATAACCCCGACAGCGCAGAT 9054 |||||||| | || | ||||| ||||| |||||||| |||||| || ||| Sbjct 81798 GATGCCGATTTAATTATGTTTATTTACCGTGATGAGGTTTATAACAAAGAGTCGAAAGAA 81739 Query 9055 CGCGGTACGGCCGAAATCATCATTGCGAAGCAGCGAAACGGGCCGATTGGCACCGTACG 9113 || || || ||||| ||||||| || || || || || ||||| || || || || Sbjct 81738 GCAGGCACAGCTGAAATTATCATTGGTAAACAACGTAATGGCCCGATCGGGACTGTGCG 81680 >seq6714 Length=1758414 Score = 96.9 bits (106), Expect = 9e-16 Identities = 116/154 (75%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 8878 GCGAAGGAACTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAAT 8937 || ||||||||| | ||||| |||||||| ||||||||||| || | |||| | Sbjct 592377 GCCAAGGAACTCAATGTTCCCATCATCGCACTGTCGCAGCTGTCGCGTCAGGTCGAAAGC 592436 Query 8938 CGCCCAAACAAGCGGCCCGTCA--TGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGG 8995 || ||||||| |||| || |||| || || ||||| ||||| |||||||||||| Sbjct 592437 CGTGACGACAAGCG-CCCG-CAGCTGTCGGACCTTCGCGAATCGGGCTCGATCGAGCAGG 592494 Query 8996 ATGCCGACGTGATCCTCTTTATCTACCGCGATGA 9029 | || ||||| |||||||| |||| ||||| || Sbjct 592495 ACGCGGACGTCGTCCTCTTTGTCTATCGCGACGA 592528 >seq9622 Length=151425 Score = 86.0 bits (94), Expect = 2e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 35777 ATCGAGCGTCTGGACTGGGCGGATTGCATCGATCGCTATGACCGGCCGCACACGTTGTTC 35836 ||||| | || |||||| ||| | |||||||||||| ||||||||| | ||| ||||| Sbjct 79770 ATCGAATGCCTTGACTGGCTGGACTTCATCGATCGCTACGACCGGCCGGAGACGCTGTTC 79711 Query 35837 TATCTCGATCCGCCGTATTTCG 35858 ||||||||||| || ||||||| Sbjct 79710 TATCTCGATCCACCCTATTTCG 79689 >seq8050 Length=287393 Score = 84.2 bits (92), Expect = 6e-12 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 8881 AAGGAACTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGC 8940 ||||||||| |||| ||||||||||||||||| ||||| || | | | || | ||| Sbjct 96419 AAGGAACTCAACGTCCCGATCATCGCGCTGTCACAGCTCTCCCGTGCGGTGGAAAGCCGC 96360 Query 8941 CCAAACAAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCC 9000 | ||||||| || | ||||| ||||| || || || | ||||||||||| ||| Sbjct 96359 GAAGACAAGCGTCCGCAGCTTTCCGACCTGCGTGAATCCGGCTCCATCGAGCAGGACGCC 96300 Query 9001 GACGTGATCCTCTT 9014 |||||| | || || Sbjct 96299 GACGTGGTGCTGTT 96286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127522791578364