Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_013055.1
Length=39896
Score E
Sequences producing significant alignments: (Bits) Value
seq7029 165 2e-36
seq12095 134 4e-27
seq9956 122 2e-23
seq12839 109 1e-19
seq6714 96.9 9e-16
seq9622 86.0 2e-12
seq8050 84.2 6e-12
>seq7029
Length=148368
Score = 165 bits (182), Expect = 2e-36
Identities = 469/715 (66%), Gaps = 22/715 (3%)
Strand=Plus/Plus
Query 8454 CGGACGGCCGTCGATGGGAAAGACCTCCCTCGCAATGAATATCGCAGAGCATGTCGCCAT 8513
|| ||| || |||||||| |||||||| | || |||||||||| ||||| || || |
Sbjct 76149 CGCACGCCCCTCGATGGGCAAGACCTCGTTTGCGGTGAATATCGCCGAGCACGTGGCGCT 76208
Query 8514 CGTGTCGA--GATTGCCCGTCGGCGTCTTGTCGCTGGAAATGCCGACCGAACAGTTGACC 8571
| ||| | |||| |||| | | || || |||||||| | | ||| || |
Sbjct 76209 CAA--CGAAGGCCTGCCGGTCGCCATTTTCTCCATGGAAATGGGCGCGGCCCAGCTGGCG 76266
Query 8572 ATGCGCATGCTGGCGTCGACATCCCGTATCAGCCAAAACAGGCTGCGAACCGGTCGCCTC 8631
|||| || | | || | ||| ||| ||| || ||||| || || |||
Sbjct 76267 GTGCGTATCGTCGGCTCTATCGGCCGCGTCAACCAGGGCAATCTGCGCACGGGCAAGCTC 76326
Query 8632 GAGGATGACGACTGGCCGCGCCTGACGCGTGGCGTCGAGCTGATGGCCGACGCGCCCGTG 8691
| |||||||| ||||||||||||||| | | |||||| | || | | | || ||
Sbjct 76327 AACGATGACGAGTGGCCGCGCCTGACGGAAGCCATCGAGCGGCTGCGCACGGTGTCCCTG 76386
Query 8692 CATATTCTCGATAGCTCCGCGATCACCCCGTCGAAATTCAAGTCCGAGTTGCGGCGCTTG 8751
|| || ||| | ||| | | || || | | || | ||||||| ||
Sbjct 76387 CACATCGACGAGACGCCCGGCCTGTCGCCTACGGAGCTGCGCGCCAATGCGCGGCGCCTG 76446
Query 8752 TATCGCGAA--TGCGGCCGGCTCGGGATGATTGTCGTTGACTACCTGCAGCTGATG---- 8805
|||| | |||||| ||| || |||| || || ||||| ||||||||||||
Sbjct 76447 G--CGCGTACCTGCGGCAAGCTGGGCCTGATCGTGGTCGACTATCTGCAGCTGATGAGCG 76504
Query 8806 --TCGGGTGACGGCGGCGGATCTGAAATGCGGGCCACCGAGGTCGCCGAAATATCGCGCG 8863
|||||| | || | | || || | ||||||| | | ||| || ||||| |
Sbjct 76505 GCTCGGGTTCGGCCGCCAGTTCCGACAA------CACCGAGCTGGGCGAGATTTCGCGGG 76558
Query 8864 CACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAATC 8923
| || | || ||||| | | ||| | || || ||||| ||||| || |
Sbjct 76559 GCTTGAAGATGCTGGCCAAGGAGTTGCAGTGCCCGGTGATTGCCCTGTCCCAGCTCAACC 76618
Query 8924 GAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGGTG 8983
| | | ||| | ||| | ||||||| ||| | |||||||| |||||||| ||||| |
Sbjct 76619 GTTCGGTGGAGCAGCGCACCGACAAGCGCCCCATGATGTCCGACCTGCGCGAATCGGGCG 76678
Query 8984 CGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCGATGAGGTCTATAACCCCG 9043
| |||||||||||||||||| | ||| | || |||||||||||||| ||| ||| |
Sbjct 76679 CCATCGAGCAGGATGCCGACATCATCATGTTCATCTACCGCGATGACTACTACAACAAGG 76738
Query 9044 ACAGCGCAGATCGCGGTACGGCCGAAATCATCATTGCGAAGCAGCGAAACGGGCCGATTG 9103
||||| || | | | |||||| ||||||| | |||||||| ||||| |||| |
Sbjct 76739 ACAGCAAGGAGCCCAACATCGCCGAAGTCATCATCGGCAAGCAGCGTAACGGCCCGACCG 76798
Query 9104 GCACCGTACGGCTCGCATTCCAGAACGCAACA-ACCCGGTTCGAGAATTTCGCCG 9157
|||| || ||| |||||||| | || || || |||||||| | ||||
Sbjct 76799 GCACGGTCAAGCTGTTCTTCCAGAA-AAACCAGACGCGCTTCGAGAACCTGGCCG 76852
>seq12095
Length=15812
Score = 134 bits (148), Expect = 4e-27
Identities = 222/316 (70%), Gaps = 6/316 (2%)
Strand=Plus/Plus
Query 8788 GACTACCTGCAGCTGATGTCGGGTGACGGCGGCGGATCTGAAATGCGGGCCACCGAGGTC 8847
|||||||||||||||||| | ||| ||| || |||| || || || || ||
Sbjct 1370 GACTACCTGCAGCTGATGA-GCGTGCCGG--GCAACAGCGAAAACCGCGCGACTGAAATC 1426
Query 8848 GCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCGCG 8907
| || || ||||| | || || | || |||||||| |||| ||| | ||||||
Sbjct 1427 TCGGAGATCTCGCGTTCGCTGAAGGGCCTGGCCAAGGAACTGCACGTGCCGGTGATCGCG 1486
Query 8908 CTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCGAT 8967
|| |||||||| || || ||| || | || | ||||||| || || ||| |||||
Sbjct 1487 CTTTCGCAGCTCAACCGCTCGCTGGAAACGCGTACCGACAAGCGCCCGGTAATGGCCGAT 1546
Query 8968 CTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCGAT 9027
|| ||||| ||||| || |||||||||||||| ||| ||||| |||| |||||||||||
Sbjct 1547 CTTCGCGAATCGGGCGCAATCGAGCAGGATGCGGACATGATCGTCTTCATCTACCGCGAC 1606
Query 9028 GAGGTCTATAACCCCGACA--GCGCAGATCGCGGTAC-GGCCGAAATCATCATTGCGAAG 9084
|| ||| ||| || | ||| | | || | |||||| |||||||| | |||
Sbjct 1607 GATTACTACAACAAGGAAAATTCGCCGGACAAGGGCCTGGCCGAGATCATCATCGGCAAG 1666
Query 9085 CAGCGAAACGGGCCGA 9100
|| || ||| ||||
Sbjct 1667 CACCGTGGCGGCCCGA 1682
>seq9956
Length=123604
Score = 122 bits (134), Expect = 2e-23
Identities = 126/165 (76%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 8953 CCCGTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTC 9012
||||| ||||| || | || || || || ||||| ||||| ||||| ||| |||| |
Sbjct 100325 CCCGTGATGTCTGACTTACGTGAATCCGGCGCGATTGAGCAAGATGCAGACTTGATTTTG 100266
Query 9013 TTTATCTACCGCGATGAGGTCTATAACCCCGACAGCGCAGATCGCGGTACGGCCGAAATC 9072
||||||||||| || || || |||||||| |||||| | || || |||||||||||
Sbjct 100265 TTTATCTACCGTGACGAAGTGTATAACCCGGACAGCCCTGACAAAGGGACGGCCGAAATT 100206
Query 9073 ATCATTGCGAAGCAGCGAAACGGGCCGATTGGCACCGTACGGCTC 9117
|| |||| |||||||| ||||| |||||||| ||| || |||
Sbjct 100205 ATTATTGGTAAGCAGCGTAACGGCCCGATTGGTCGCGTGCGCCTC 100161
>seq12839
Length=204338
Score = 109 bits (120), Expect = 1e-19
Identities = 169/239 (71%), Gaps = 2/239 (1%)
Strand=Plus/Minus
Query 8876 TTGCGAAGGAACTCGACGTTCCGA-TCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAG 8934
|||| |||||| | || || || | || || ||||| |||||||| || || ||
Sbjct 81917 TTGCCAAGGAAAT-GATGTGCCCTGTTATTGCACTGTCACAGCTTAACCGTTCTCTGGAA 81859
Query 8935 AATCGCCCAAACAAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAG 8994
|| || ||||| || || || || |||||||| | || || || ||||| |||||||||
Sbjct 81858 AACCGTCCAAATAAACGTCCGGTAATGTCCGACTTACGTGAATCAGGTGCAATCGAGCAG 81799
Query 8995 GATGCCGACGTGATCCTCTTTATCTACCGCGATGAGGTCTATAACCCCGACAGCGCAGAT 9054
|||||||| | || | ||||| ||||| |||||||| |||||| || |||
Sbjct 81798 GATGCCGATTTAATTATGTTTATTTACCGTGATGAGGTTTATAACAAAGAGTCGAAAGAA 81739
Query 9055 CGCGGTACGGCCGAAATCATCATTGCGAAGCAGCGAAACGGGCCGATTGGCACCGTACG 9113
|| || || ||||| ||||||| || || || || || ||||| || || || ||
Sbjct 81738 GCAGGCACAGCTGAAATTATCATTGGTAAACAACGTAATGGCCCGATCGGGACTGTGCG 81680
>seq6714
Length=1758414
Score = 96.9 bits (106), Expect = 9e-16
Identities = 116/154 (75%), Gaps = 4/154 (3%)
Strand=Plus/Plus
Query 8878 GCGAAGGAACTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAAT 8937
|| ||||||||| | ||||| |||||||| ||||||||||| || | |||| |
Sbjct 592377 GCCAAGGAACTCAATGTTCCCATCATCGCACTGTCGCAGCTGTCGCGTCAGGTCGAAAGC 592436
Query 8938 CGCCCAAACAAGCGGCCCGTCA--TGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGG 8995
|| ||||||| |||| || |||| || || ||||| ||||| ||||||||||||
Sbjct 592437 CGTGACGACAAGCG-CCCG-CAGCTGTCGGACCTTCGCGAATCGGGCTCGATCGAGCAGG 592494
Query 8996 ATGCCGACGTGATCCTCTTTATCTACCGCGATGA 9029
| || ||||| |||||||| |||| ||||| ||
Sbjct 592495 ACGCGGACGTCGTCCTCTTTGTCTATCGCGACGA 592528
>seq9622
Length=151425
Score = 86.0 bits (94), Expect = 2e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 35777 ATCGAGCGTCTGGACTGGGCGGATTGCATCGATCGCTATGACCGGCCGCACACGTTGTTC 35836
||||| | || |||||| ||| | |||||||||||| ||||||||| | ||| |||||
Sbjct 79770 ATCGAATGCCTTGACTGGCTGGACTTCATCGATCGCTACGACCGGCCGGAGACGCTGTTC 79711
Query 35837 TATCTCGATCCGCCGTATTTCG 35858
||||||||||| || |||||||
Sbjct 79710 TATCTCGATCCACCCTATTTCG 79689
>seq8050
Length=287393
Score = 84.2 bits (92), Expect = 6e-12
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 8881 AAGGAACTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGC 8940
||||||||| |||| ||||||||||||||||| ||||| || | | | || | |||
Sbjct 96419 AAGGAACTCAACGTCCCGATCATCGCGCTGTCACAGCTCTCCCGTGCGGTGGAAAGCCGC 96360
Query 8941 CCAAACAAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCC 9000
| ||||||| || | ||||| ||||| || || || | ||||||||||| |||
Sbjct 96359 GAAGACAAGCGTCCGCAGCTTTCCGACCTGCGTGAATCCGGCTCCATCGAGCAGGACGCC 96300
Query 9001 GACGTGATCCTCTT 9014
|||||| | || ||
Sbjct 96299 GACGTGGTGCTGTT 96286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 127522791578364
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |