Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq9020 93.3 5e-14 seq7041 91.5 2e-13 >seq9020 Length=152994 Score = 93.3 bits (102), Expect = 5e-14 Identities = 76/90 (84%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 31291 GCGGAGAGGGTGGGATTCGAACCCACGG-AGGCTTTCACCT-CGCTAGTTTTCAAGACTA 31348 ||||| |||||||||||||||||||||| |||||| ||||| || ||||||||||| Sbjct 45683 GCGGACAGGGTGGGATTCGAACCCACGGTAGGCTTCCACCTACGGCGGTTTTCAAGACCG 45624 Query 31349 GAGCCTTCAACCACTCGACCACCTCTCCAT 31378 ||||| ||||||||| |||||| ||||| Sbjct 45623 CTGCCTTAAACCACTCGGCCACCTGTCCAT 45594 >seq7041 Length=191181 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 32009 TGGCGACTCAAGTAGGATTCGAACCTACGACCGACTGCTTAGAAGGCAGTTGCTCTATCC 32068 ||||||| | | |||| |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 50842 TGGCGACCCCTGCAGGACTCGAACCTGCGACCTACTGCTTAGAAGGCAGTTGCTCTATCC 50783 Query 32069 AGCTGAGCTA 32078 || ||||||| Sbjct 50782 AGTTGAGCTA 50773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622007692782960