Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq10097 123 3e-23 seq8301 102 1e-16 >seq10097 Length=214583 Score = 123 bits (136), Expect = 3e-23 Identities = 282/413 (68%), Gaps = 10/413 (2%) Strand=Plus/Plus Query 12689 CACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAAT 12748 |||| || || ||| || ||||| || || || || || ||| |||||| | |||| Sbjct 47674 CACGACGACCTGACGGTCGAAGCGGCCGGGACGCAGAAGTGCGGGGTCAAGAACATCAGG 47733 Query 12749 GCGGTTCGTCGCCGCGATGACAACGATGCCCGTC--TCGTTATCGAAGCCATCCATCTCA 12806 ||||| || || || |||| | ||||||| || ||| |||||||| ||||| || Sbjct 47734 ACGGTTGGTGGCGGCAATGAGGATGATGCCC-TCATTCGCC-TCGAAGCCGTCCATTTCG 47791 Query 12807 GTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG-GGCATACCACCCGCACT 12865 || || || || | || ||||||||||| || || || || | ||| || | Sbjct 47792 ACCAGCAGCTGGTTCAGCGTCTGTTCACGTTCGTCGTTACCGCCGCCGA-GACCGGCGCC 47850 Query 12866 GCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATT-TTCAC 12924 || || |||||||| || |||||||| ||||| | ||| | || ||| ||| Sbjct 47851 ACGATGGCGGCCGACGGCATCGATTTCGTCGATGAAGATGATGGAGGGCGCATTCTTCTT 47910 Query 12925 GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAA 12984 || | | || || || || ||||| | | || ||||| || || ||||| ||||| | Sbjct 47911 GGCCTGC-TCGAACATGTCACGCACACGGCTTGCGCCGACGCCGACGAACATTTCCACGA 47969 Query 12985 AATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCG 13043 ||| | ||||| || | || |||||| ||||||| ||| || |||| || || || Sbjct 47970 AATCCGAACCGGAA-ATGGTGAAGAAGGGCACGTTGGCTTCGCCAGCGACGGAACGCGCC 48028 Query 13044 AGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGAT 13096 || || ||||| ||||| || || || |||| || ||||||| || || Sbjct 48029 AGCAGCGTCTTACCCGTGCCCGGAGGGCCAACGAGCAGCACACCACGCGGAAT 48081 >seq8301 Length=73398 Score = 102 bits (112), Expect = 1e-16 Identities = 279/417 (67%), Gaps = 14/417 (3%) Strand=Plus/Minus Query 12657 ATCTTCTCGCGTCCGCGCAC-ACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACC 12715 ||||||||||| |||| ||| | |||| || ||| || || || || ||||| || Sbjct 66876 ATCTTCTCGCGACCGCCCACGTCCGGGTTCGG-CACCACGACCTGGCGGTCGAAGCGGCC 66818 Query 12716 TGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGAT 12775 || || || ||||| ||| || | || ||||| || || ||||| | | ||| Sbjct 66817 CGGACGCAGCAGGGCCGGGTCCAGAACGTCCGGACGGTTGGTGGCGGCGATCAGGATGAT 66758 Query 12776 GCCCGTCTCGTT---ATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTC 12832 ||| ||||| |||||||| |||||||| || || || || | ||| || || Sbjct 66757 GCC---TTCGTTGGCCTCGAAGCCGTCCATCTCGACCAGCAGCTGGTTCAGGGTCTGCTC 66701 Query 12833 ACGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATT 12890 || || ||||| || || ||| ||||| | || || ||||| ||||| ||| Sbjct 66700 GCGCTCGTCATT-GC-CGCCGCCCAGGCCCGCGCCACGATGGCGGCCGACCGCGTCGATT 66643 Query 12891 TCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACT 12950 ||||| ||||| | ||| || || || | ||| ||| || || || ||||| Sbjct 66642 TCGTCGATGAAGATGATGCAGGGGGCGTTATTCTTGGCCTGTTCGAACATGTCGCGCACG 66583 Query 12951 CTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAA 13009 | |||| ||||| || || |||||||| || |||| | ||| | || | || ||| Sbjct 66582 CGGCTGGCGCCGACGCCGACGAACATCTCGACGAAATCCGAACCGG-AGATCGTGAAGAA 66524 Query 13010 GGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || ||| | || || |||| ||| ||||||| |||||||| || || || || Sbjct 66523 CGGCACGCCCGCCTCGCCGGCGACGGCGCGGGCGATCAGGGTCTTACCGGTGCCGGG 66467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613391714938440