Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq10097 123 3e-23
seq8301 102 1e-16
>seq10097
Length=214583
Score = 123 bits (136), Expect = 3e-23
Identities = 282/413 (68%), Gaps = 10/413 (2%)
Strand=Plus/Plus
Query 12689 CACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAAT 12748
|||| || || ||| || ||||| || || || || || ||| |||||| | ||||
Sbjct 47674 CACGACGACCTGACGGTCGAAGCGGCCGGGACGCAGAAGTGCGGGGTCAAGAACATCAGG 47733
Query 12749 GCGGTTCGTCGCCGCGATGACAACGATGCCCGTC--TCGTTATCGAAGCCATCCATCTCA 12806
||||| || || || |||| | ||||||| || ||| |||||||| ||||| ||
Sbjct 47734 ACGGTTGGTGGCGGCAATGAGGATGATGCCC-TCATTCGCC-TCGAAGCCGTCCATTTCG 47791
Query 12807 GTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG-GGCATACCACCCGCACT 12865
|| || || || | || ||||||||||| || || || || | ||| || |
Sbjct 47792 ACCAGCAGCTGGTTCAGCGTCTGTTCACGTTCGTCGTTACCGCCGCCGA-GACCGGCGCC 47850
Query 12866 GCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATT-TTCAC 12924
|| || |||||||| || |||||||| ||||| | ||| | || ||| |||
Sbjct 47851 ACGATGGCGGCCGACGGCATCGATTTCGTCGATGAAGATGATGGAGGGCGCATTCTTCTT 47910
Query 12925 GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAA 12984
|| | | || || || || ||||| | | || ||||| || || ||||| ||||| |
Sbjct 47911 GGCCTGC-TCGAACATGTCACGCACACGGCTTGCGCCGACGCCGACGAACATTTCCACGA 47969
Query 12985 AATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCG 13043
||| | ||||| || | || |||||| ||||||| ||| || |||| || || ||
Sbjct 47970 AATCCGAACCGGAA-ATGGTGAAGAAGGGCACGTTGGCTTCGCCAGCGACGGAACGCGCC 48028
Query 13044 AGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGAT 13096
|| || ||||| ||||| || || || |||| || ||||||| || ||
Sbjct 48029 AGCAGCGTCTTACCCGTGCCCGGAGGGCCAACGAGCAGCACACCACGCGGAAT 48081
>seq8301
Length=73398
Score = 102 bits (112), Expect = 1e-16
Identities = 279/417 (67%), Gaps = 14/417 (3%)
Strand=Plus/Minus
Query 12657 ATCTTCTCGCGTCCGCGCAC-ACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACC 12715
||||||||||| |||| ||| | |||| || ||| || || || || ||||| ||
Sbjct 66876 ATCTTCTCGCGACCGCCCACGTCCGGGTTCGG-CACCACGACCTGGCGGTCGAAGCGGCC 66818
Query 12716 TGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGAT 12775
|| || || ||||| ||| || | || ||||| || || ||||| | | |||
Sbjct 66817 CGGACGCAGCAGGGCCGGGTCCAGAACGTCCGGACGGTTGGTGGCGGCGATCAGGATGAT 66758
Query 12776 GCCCGTCTCGTT---ATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTC 12832
||| ||||| |||||||| |||||||| || || || || | ||| || ||
Sbjct 66757 GCC---TTCGTTGGCCTCGAAGCCGTCCATCTCGACCAGCAGCTGGTTCAGGGTCTGCTC 66701
Query 12833 ACGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATT 12890
|| || ||||| || || ||| ||||| | || || ||||| ||||| |||
Sbjct 66700 GCGCTCGTCATT-GC-CGCCGCCCAGGCCCGCGCCACGATGGCGGCCGACCGCGTCGATT 66643
Query 12891 TCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACT 12950
||||| ||||| | ||| || || || | ||| ||| || || || |||||
Sbjct 66642 TCGTCGATGAAGATGATGCAGGGGGCGTTATTCTTGGCCTGTTCGAACATGTCGCGCACG 66583
Query 12951 CTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAA 13009
| |||| ||||| || || |||||||| || |||| | ||| | || | || |||
Sbjct 66582 CGGCTGGCGCCGACGCCGACGAACATCTCGACGAAATCCGAACCGG-AGATCGTGAAGAA 66524
Query 13010 GGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066
|| ||| | || || |||| ||| ||||||| |||||||| || || || ||
Sbjct 66523 CGGCACGCCCGCCTCGCCGGCGACGGCGCGGGCGATCAGGGTCTTACCGGTGCCGGG 66467
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613391714938440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |