Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_013599.1 Length=36674 Score E Sequences producing significant alignments: (Bits) Value seq11405 235 1e-57 seq7272 120 7e-23 >seq11405 Length=110570 Score = 235 bits (260), Expect = 1e-57 Identities = 600/907 (66%), Gaps = 41/907 (5%) Strand=Plus/Plus Query 21853 TCAAGTCCTTTGATCAGGGCCGCGAGAAATGGCAAGCCGATACGGTCGATTGGGTGTGGT 21912 ||||||||| || ||||||||||||| ||||| | | || || ||| | || |||| Sbjct 95210 TCAAGTCCTACGAGAAGGGCCGCGAGAAGTGGCAGGGCCCCACCGTGGATGGCGTCTGGT 95269 Query 21913 TTGATGAGGAGCCACCCGAAGATGTGTATTTTGAGGGGATCACCCGGACCAAT------- 21965 |||| |||||||| || | || | ||| ||||| | ||||||||||| Sbjct 95270 TTGACGAGGAGCCGCCGCAGGACATCTATGCCGAGGGCCTGACCCGGACCAACAACGGCC 95329 Query 21966 ----CGGACCTTTGGCCCAGTGTTTATGACGTTCACACCGCTGAAGGGCATGTCCAGCGT 22021 ||| | || || ||| | || ||||| |||||| ||||||||| ||| Sbjct 95330 AGCGCGGCCAGTTCGCACAG-----ACCACCTTCACCCCGCTGCTGGGCATGTCGGACGT 95384 Query 22022 GGTACGGCGGTTTCTGCTG------GAACAAGCCCCTGAC----AGGG--GGCTGGTG-- 22067 ||| ||| || ||| || | | | | ||||| | ||| ||| || Sbjct 95385 GGTGATGCGTTTCCTGATGCCCGAGGCAGACGACCCTGGCGCCAAGGCCCGGCACGTCAC 95444 Query 22068 CAG-ATGACCATTGACGACGCCGAACATTACAGCCCTGAGGATCGGGCGCG---CATCAT 22123 ||| |||||||| |||| || || ||| | ||| || | | || |||| | Sbjct 95445 CAGCATGACCATCTGGGACGTGGACCACTACT-CGCTG--GAACAGAAGCAGTCCATCGT 95501 Query 22124 TGCCAGCTACCCCGCCCACGAGCGCGAGGCGCGCACCAAGGGCACTCCTTCGCTGGGCAG 22183 ||||||||||| || |||||||| ||||||||| ||||||||| || |||||||||| Sbjct 95502 CGCCAGCTACCCGGCGCACGAGCGGGAGGCGCGCTCCAAGGGCATCCCGACGCTGGGCAG 95561 Query 22184 TGGCCGCGTGTTTCCTATCGCGGAGGACTCGATTGCCATCGCGCCGTTCTCGATTCCTGA 22243 ||||| | || || | | ||||||| || | ||| ||| |||| |||| Sbjct 95562 CGGCCGGATCTTCCCCGTGGAGGAGGACAGCATCAAGGTGCAGCCCTTCCCGATCCCTGC 95621 Query 22244 AGAATGGGCGTTGATTGGCGGGATGGACTTTGGGTATGACCACCCGTTCGCTGCGGTCAA 22303 | |||| | || ||| ||||||| || | || ||||| || || || | Sbjct 95622 TCACTGGGTGCGCATCAACGGCCTGGACTTCGGCTGGGATCACCCCACGGCCGCCGTGCA 95681 Query 22304 AATGGCCTGGGATCGTGAAGCCGATGTGATTTACGTGAT--GTGTGCATACCGTCAGCGT 22361 |||||||||| || || ||| | || |||| | |||| || ||| Sbjct 95682 GTTGGCCTGGGACCGGGACAGCGACTGCCTCTATTTGATCCAGGGGCAT--CGCCAGAAG 95739 Query 22362 GAAGCAACCCCTGTGATTCACACAGCGGCATTGAGGCCCTGGGGCGCACATTTACCCTGG 22421 ||||| || || | | ||| | || | | | | ||||||||| | | ||| | Sbjct 95740 GAAGCCACGCCCATCCTGCACGCCGCAACCATCAAGGCCTGGGGCGAATGGGTGCCCACG 95799 Query 22422 GCGTGGCCGCACGATGGGTTGCAACACGACAAAGGCAGCGGTGAACAGTTGGCCGAACAA 22481 || ||||| || || || |||| |||||||| |||||||| || || |||||| || Sbjct 95800 GCATGGCCCCATGACGGCCTGCAGCACGACAAGGGCAGCGGCGAGCAACTGGCCGTCCAG 95859 Query 22482 TACCGGCAGCAGGGGCTTTCCATGCTGGGGCAACGGGCGACCTTCACAGACGGCACCAAC 22541 ||| | || ||||| |||||| | | || || |||||| ||||||| |||| Sbjct 95860 TACGCGAAGACCGGGCTGAAGATGCTGAAGGATCGCGCCACCTTCGAGGACGGCAGCAAC 95919 Query 22542 GGCCTTGAAGCAGGCGTCACGGAGATGCTGGACCGGATGCACACCGGACGTTTGAAGGTG 22601 ||| | || || ||| | | |||||||||| | || ||||| ||||| || || ||||| Sbjct 95920 GGCGTCGAGGCCGGCCTGATGGAGATGCTGCAGCGCATGCAGACCGGCCGATTCAAGGTA 95979 Query 22602 TTTAGCCACCTGACAGAATGGTTTGAAGAATTCCGGCTCTACCACCGTGAAGACGGGCGG 22661 || |||||| || ||||| || ||||| || |||||||| |||||||| | Sbjct 95980 TTCGCACACCTGGAGGACTGGTTCAGCGAGTTCCGCCTGTACCACCGGGAAGACGGCAAG 96039 Query 22662 ATCGTCAAACACCATGACGACCTGCTCAGCGCGACACGGTACGCGATGATGATGCGGCGG 22721 |||| || | || ||||||||| | ||||| || || ||||| |||||||| ||| Sbjct 96040 GTCGTGAAGAAGCAGGACGACCTGATGAGCGCCACCCGCTACGCCGTGATGATGAAGCGC 96099 Query 22722 TACGCCA 22728 | |||| Sbjct 96100 AAGGCCA 96106 >seq7272 Length=98981 Score = 120 bits (132), Expect = 7e-23 Identities = 206/293 (70%), Gaps = 12/293 (4%) Strand=Plus/Minus Query 6502 TAGGTGCCTGTCTTGCGCAGGGTGGGCAGAACTTCCTCAAACACCCAACGCTCGAACCGT 6561 ||| |||| |||||||| | | | ||||| |||||||| || ||||| ||||||||||| Sbjct 96974 TAGCTGCCGGTCTTGCGAATGCTAGGCAGGACTTCCTCGAATACCCAGCGCTCGAACCGC 96915 Query 6562 TCTGCGGCAGGGAGTTTGCTGCTCACAATCAAGCGGAGCATGTCAGGCTCGGAGATGATC 6621 || || ||||| || ||||||| || |||| ||| | ||| || |||||| |||||| Sbjct 96914 TCAGCCGCAGGCAGCTTGCTGCCCAAGATCAGGCGCAACATATCGGGCTCGCTGATGATG 96855 Query 6622 CTGGTTTCCCGCGAGCGACCAAGGCTATCTGGGATTGGGTAACACTTCGTTACCCCTCTG 6681 | ||| || || || || | | | | ||||| | ||||||||||| || Sbjct 96854 CGCACATCCTGCATGCCGCC--TGCCGT-TTGAAGGGGGTACCGTTTCGTTACCCCCTTG 96798 Query 6682 CAATGATCGCCCAAAGCTTTGTTATGGTTGGTGTAACCGAGTACATCGGCAACGTCTTTA 6741 || |||||||||| || || | | || | ||| || || || | || || || || Sbjct 96797 CAGTGATCGCCCATCGCCTTACTTGGATTCGCGTAGCCCAGGACCACAGCCACATCCTTG 96738 Query 6742 CCGACAAACCA---CACTTCACCGTGATCATCGACCACGGTACGCACGGCTTG 6791 ||||| ||||| | | |||| | |||| |||||| ||||||||||| Sbjct 96737 CCGACGAACCAAGGCTCGCCACCCT--CCATC-ACCACG---CGCACGGCTTG 96691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117214235342088