Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_013599.1
Length=36674
Score E
Sequences producing significant alignments: (Bits) Value
seq11405 235 1e-57
seq7272 120 7e-23
>seq11405
Length=110570
Score = 235 bits (260), Expect = 1e-57
Identities = 600/907 (66%), Gaps = 41/907 (5%)
Strand=Plus/Plus
Query 21853 TCAAGTCCTTTGATCAGGGCCGCGAGAAATGGCAAGCCGATACGGTCGATTGGGTGTGGT 21912
||||||||| || ||||||||||||| ||||| | | || || ||| | || ||||
Sbjct 95210 TCAAGTCCTACGAGAAGGGCCGCGAGAAGTGGCAGGGCCCCACCGTGGATGGCGTCTGGT 95269
Query 21913 TTGATGAGGAGCCACCCGAAGATGTGTATTTTGAGGGGATCACCCGGACCAAT------- 21965
|||| |||||||| || | || | ||| ||||| | |||||||||||
Sbjct 95270 TTGACGAGGAGCCGCCGCAGGACATCTATGCCGAGGGCCTGACCCGGACCAACAACGGCC 95329
Query 21966 ----CGGACCTTTGGCCCAGTGTTTATGACGTTCACACCGCTGAAGGGCATGTCCAGCGT 22021
||| | || || ||| | || ||||| |||||| ||||||||| |||
Sbjct 95330 AGCGCGGCCAGTTCGCACAG-----ACCACCTTCACCCCGCTGCTGGGCATGTCGGACGT 95384
Query 22022 GGTACGGCGGTTTCTGCTG------GAACAAGCCCCTGAC----AGGG--GGCTGGTG-- 22067
||| ||| || ||| || | | | | ||||| | ||| ||| ||
Sbjct 95385 GGTGATGCGTTTCCTGATGCCCGAGGCAGACGACCCTGGCGCCAAGGCCCGGCACGTCAC 95444
Query 22068 CAG-ATGACCATTGACGACGCCGAACATTACAGCCCTGAGGATCGGGCGCG---CATCAT 22123
||| |||||||| |||| || || ||| | ||| || | | || |||| |
Sbjct 95445 CAGCATGACCATCTGGGACGTGGACCACTACT-CGCTG--GAACAGAAGCAGTCCATCGT 95501
Query 22124 TGCCAGCTACCCCGCCCACGAGCGCGAGGCGCGCACCAAGGGCACTCCTTCGCTGGGCAG 22183
||||||||||| || |||||||| ||||||||| ||||||||| || ||||||||||
Sbjct 95502 CGCCAGCTACCCGGCGCACGAGCGGGAGGCGCGCTCCAAGGGCATCCCGACGCTGGGCAG 95561
Query 22184 TGGCCGCGTGTTTCCTATCGCGGAGGACTCGATTGCCATCGCGCCGTTCTCGATTCCTGA 22243
||||| | || || | | ||||||| || | ||| ||| |||| ||||
Sbjct 95562 CGGCCGGATCTTCCCCGTGGAGGAGGACAGCATCAAGGTGCAGCCCTTCCCGATCCCTGC 95621
Query 22244 AGAATGGGCGTTGATTGGCGGGATGGACTTTGGGTATGACCACCCGTTCGCTGCGGTCAA 22303
| |||| | || ||| ||||||| || | || ||||| || || || |
Sbjct 95622 TCACTGGGTGCGCATCAACGGCCTGGACTTCGGCTGGGATCACCCCACGGCCGCCGTGCA 95681
Query 22304 AATGGCCTGGGATCGTGAAGCCGATGTGATTTACGTGAT--GTGTGCATACCGTCAGCGT 22361
|||||||||| || || ||| | || |||| | |||| || |||
Sbjct 95682 GTTGGCCTGGGACCGGGACAGCGACTGCCTCTATTTGATCCAGGGGCAT--CGCCAGAAG 95739
Query 22362 GAAGCAACCCCTGTGATTCACACAGCGGCATTGAGGCCCTGGGGCGCACATTTACCCTGG 22421
||||| || || | | ||| | || | | | | ||||||||| | | ||| |
Sbjct 95740 GAAGCCACGCCCATCCTGCACGCCGCAACCATCAAGGCCTGGGGCGAATGGGTGCCCACG 95799
Query 22422 GCGTGGCCGCACGATGGGTTGCAACACGACAAAGGCAGCGGTGAACAGTTGGCCGAACAA 22481
|| ||||| || || || |||| |||||||| |||||||| || || |||||| ||
Sbjct 95800 GCATGGCCCCATGACGGCCTGCAGCACGACAAGGGCAGCGGCGAGCAACTGGCCGTCCAG 95859
Query 22482 TACCGGCAGCAGGGGCTTTCCATGCTGGGGCAACGGGCGACCTTCACAGACGGCACCAAC 22541
||| | || ||||| |||||| | | || || |||||| ||||||| ||||
Sbjct 95860 TACGCGAAGACCGGGCTGAAGATGCTGAAGGATCGCGCCACCTTCGAGGACGGCAGCAAC 95919
Query 22542 GGCCTTGAAGCAGGCGTCACGGAGATGCTGGACCGGATGCACACCGGACGTTTGAAGGTG 22601
||| | || || ||| | | |||||||||| | || ||||| ||||| || || |||||
Sbjct 95920 GGCGTCGAGGCCGGCCTGATGGAGATGCTGCAGCGCATGCAGACCGGCCGATTCAAGGTA 95979
Query 22602 TTTAGCCACCTGACAGAATGGTTTGAAGAATTCCGGCTCTACCACCGTGAAGACGGGCGG 22661
|| |||||| || ||||| || ||||| || |||||||| |||||||| |
Sbjct 95980 TTCGCACACCTGGAGGACTGGTTCAGCGAGTTCCGCCTGTACCACCGGGAAGACGGCAAG 96039
Query 22662 ATCGTCAAACACCATGACGACCTGCTCAGCGCGACACGGTACGCGATGATGATGCGGCGG 22721
|||| || | || ||||||||| | ||||| || || ||||| |||||||| |||
Sbjct 96040 GTCGTGAAGAAGCAGGACGACCTGATGAGCGCCACCCGCTACGCCGTGATGATGAAGCGC 96099
Query 22722 TACGCCA 22728
| ||||
Sbjct 96100 AAGGCCA 96106
>seq7272
Length=98981
Score = 120 bits (132), Expect = 7e-23
Identities = 206/293 (70%), Gaps = 12/293 (4%)
Strand=Plus/Minus
Query 6502 TAGGTGCCTGTCTTGCGCAGGGTGGGCAGAACTTCCTCAAACACCCAACGCTCGAACCGT 6561
||| |||| |||||||| | | | ||||| |||||||| || ||||| |||||||||||
Sbjct 96974 TAGCTGCCGGTCTTGCGAATGCTAGGCAGGACTTCCTCGAATACCCAGCGCTCGAACCGC 96915
Query 6562 TCTGCGGCAGGGAGTTTGCTGCTCACAATCAAGCGGAGCATGTCAGGCTCGGAGATGATC 6621
|| || ||||| || ||||||| || |||| ||| | ||| || |||||| ||||||
Sbjct 96914 TCAGCCGCAGGCAGCTTGCTGCCCAAGATCAGGCGCAACATATCGGGCTCGCTGATGATG 96855
Query 6622 CTGGTTTCCCGCGAGCGACCAAGGCTATCTGGGATTGGGTAACACTTCGTTACCCCTCTG 6681
| ||| || || || || | | | | ||||| | ||||||||||| ||
Sbjct 96854 CGCACATCCTGCATGCCGCC--TGCCGT-TTGAAGGGGGTACCGTTTCGTTACCCCCTTG 96798
Query 6682 CAATGATCGCCCAAAGCTTTGTTATGGTTGGTGTAACCGAGTACATCGGCAACGTCTTTA 6741
|| |||||||||| || || | | || | ||| || || || | || || || ||
Sbjct 96797 CAGTGATCGCCCATCGCCTTACTTGGATTCGCGTAGCCCAGGACCACAGCCACATCCTTG 96738
Query 6742 CCGACAAACCA---CACTTCACCGTGATCATCGACCACGGTACGCACGGCTTG 6791
||||| ||||| | | |||| | |||| |||||| |||||||||||
Sbjct 96737 CCGACGAACCAAGGCTCGCCACCCT--CCATC-ACCACG---CGCACGGCTTG 96691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 117214235342088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |