Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq13960 96.9 6e-15 >seq13960 Length=3940437 Score = 96.9 bits (106), Expect = 6e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| ||||| | |||||| || ||||||| ||| || || || || || ||||| Sbjct 2047745 CCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGTT 2047804 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035 || |||||||||||| || ||| |||||||| | || |||||||| |||| | ||| | Sbjct 2047805 CAAAGACTGGCTTTGATCAATG-AAGGCGCCTCTCTCGGCGGCCATCTTGAGTACGGTTT 2047863 Query 204036 TCTGCGAAATCTCCCACACCGTCTT 204060 |||| || || |||||||| ||||| Sbjct 2047864 TCTGAGAGATTTCCCACACAGTCTT 2047888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795005521973040