Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq6889 138 1e-27 seq9853 125 8e-24 seq12661 111 2e-19 >seq6889 Length=11136585 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||| | ||||| |||| || |||||| ||||| ||||| || || Sbjct 1034237 CCACCCCTCAGACGGAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 1034296 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || |||||||||||||| || || | | ||||||||| | || Sbjct 1034297 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 1034356 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||| ||| |||||| ||| | || | | ||||| || | ||||| Sbjct 1034357 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 1034416 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| |||||||| ||||| ||||| ||||| || ||||||||||||||| Sbjct 1034417 TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCATTTTG 1034467 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||| | ||||| |||| || ||| || ||||| ||||| || || Sbjct 1034009 CCACCCCTCAGACGGACTACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 1034068 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| || || |||||||||||||| || || | | ||||||||| | || Sbjct 1034069 AGAGTGCGGCAATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 1034128 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||| ||| |||||| ||| | || | | ||||| || | || || Sbjct 1034129 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACC 1034188 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 1034189 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034235 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | ||| | ||||| |||| || ||| || || || ||||| || || Sbjct 1033780 GCCACCCCTAAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGA 1033839 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || |||||||||||||| || || | | ||||||||| | || Sbjct 1033840 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGG 1033899 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||||| ||| |||||| ||| | || | ||||| || | || | Sbjct 1033900 AATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGGTGGTGTCACTGGGCTCTTC 1033959 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||||| ||||| ||||| || || || ||||| ||||| Sbjct 1033960 CTCCAGGGTGATGGCCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034007 >seq9853 Length=4041771 Score = 125 bits (138), Expect = 8e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| | ||| | |||||| |||| || ||| || |||||||||||||| | Sbjct 359781 TGCCGCCTCGCAGACGAAGCACCAGGTGCAGGGTGAACTCTTTCTGGATATTGTAGTCTG 359840 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || | ||||| ||||||| ||| |||| ||||||||||| | | Sbjct 359841 ACAGAGTGCGGCCATCCTGCAGCTGTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTG 359900 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||| ||| ||| || |||| | | | ||||| || | || | Sbjct 359901 GGATGCCCTCCTCGTCTTGGATTTTGGCTTTGACACTTTCAATGGTGTCACTGGGCTCGA 359960 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| |||||| ||||||| || |||||||| ||||| Sbjct 359961 CCTCAAGAGTGATGGTCTTGCCCATCAGCGTCTTCACAAAGATCTGCAT 360009 >seq12661 Length=3984070 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||| | ||| | |||||| |||| || ||| || |||||||||||||| | Sbjct 2676683 TGCCGCCTTGCAGACGAAGCACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTG 2676624 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | |||| | | || || ||||| ||||| || || |||| | ||||||||| | | Sbjct 2676623 ACAAAGTGAGGCCATCCTCCAGCTGTTTGCCCGCAAAGATCAGACACTGCTGGTCAGGTG 2676564 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| ||| || |||| || | ||||| || | || | Sbjct 2676563 GGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAGTAGTGTCACTGGGCTCGA 2676504 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||||||||| || || |||||||| ||||| Sbjct 2676503 CCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2676455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565132000936680