Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq899 87.8 1e-12
>seq899
Length=2520420
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || | ||| ||||| ||||| |||| |||| ||||| || || || || || | |
Sbjct 2264402 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2264461
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| ||| |||| |||| ||||||||| |||| || | | |||||| || | |||
Sbjct 2264462 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 2264521
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC--TGCGCTTTCCA 39670
| ||| |||||||| || || || | || | | ||||| || ||| |||
Sbjct 2264522 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCT--CCA 2264579
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| |||| || || || || ||||| || || || ||||||||||||||
Sbjct 2264580 CCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264628
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/217 (69%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564
|| || |||| |||| |||| ||||| || || || || || | || |||| ||
Sbjct 2265098 CGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA 2265157
Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624
|| |||| ||||||||| |||| || | | |||||| || | ||| | ||| ||||||
Sbjct 2265158 TCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTG 2265217
Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC--TGCGCTTTCCACGTCCAAAGTAA 39682
|| || || || | || | | ||||| || ||| |||| ||||| || |
Sbjct 2265218 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCT--CCACCTCCAAGGTGA 2265275
Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || || ||||| || || || ||||||||||||||
Sbjct 2265276 TGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265312
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/217 (69%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564
|| || |||| |||| |||| ||||| || || || || || | || ||| ||
Sbjct 2265326 CGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 2265385
Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624
|| |||| ||||||||| |||| || || | ||| || || | ||| | |||||||||
Sbjct 2265386 TCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGTTGGTCTGGGGGGATGCCTTCTTTT 2265445
Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC--TGCGCTTTCCACGTCCAAAGTAA 39682
|| ||| || || | || | | ||||| | ||| |||| |||| |||||
Sbjct 2265446 TCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACTTGGCT--CCACCTCCAGAGTAA 2265503
Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| |||||||| || | || ||||| |||||||||||
Sbjct 2265504 TGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCAT 2265540
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347305846714547
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |