Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq8995 331 9e-86 seq899 143 3e-29 seq6889 136 4e-27 seq9853 123 2e-23 seq12661 118 1e-21 >seq8995 Length=8301158 Score = 331 bits (366), Expect = 9e-86 Identities = 649/952 (68%), Gaps = 13/952 (1%) Strand=Plus/Plus Query 132550 TAAAAGTCCGCATCCAAAGTAAAGGTGTCGTCCTTGGCAA---ACATCACGCCAAATTTT 132606 || ||||| |||||||| ||||||| | || | | | ||||||| || | | | Sbjct 6971317 TAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTGTTGGATTTGACATCACTCCCATTCTC 6971376 Query 132607 TGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTC 132666 |||| |||| || | |||||||| || ||||| || ||||||| ||||| | Sbjct 6971377 TGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCC 6971436 Query 132667 ATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGC 132726 ||||| || || || || || ||| | |||| | | ||| || | | || Sbjct 6971437 ATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGCTCCAGCATAAGT 6971496 Query 132727 CTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGC 132786 || || ||||||||||||||||| ||| ||| |||||| | || | || | Sbjct 6971497 CTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTTC 6971556 Query 132787 ACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCC 132846 || ||||| || || || || || || || || || || | | || |||||| Sbjct 6971557 ACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTCC 6971616 Query 132847 CTAACGCGC-GCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTC 132905 | || | | | || | || ||| || || |||||||||| ||| | |||||| Sbjct 6971617 TTTACTCTCTGTTTCGAAGGTTTGT-GCAACAGGTGTTTGAACATCAGGCAGGTAAAGTC 6971675 Query 132906 GCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAG 132965 || ||||| ||||| || ||| ||| ||||| ||| || || | ||| ||||| || Sbjct 6971676 ACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAG 6971735 Query 132966 GCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGAC 133025 || ||||| |||||||| ||||| | || ||| || |||||||||| ||| || || Sbjct 6971736 TCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCAC 6971795 Query 133026 GGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAG 133085 || || || || |||| || || || | || ||||||||| | ||||||||| Sbjct 6971796 TGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAGTCCAGCGCAA 6971855 Query 133086 CGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAG 133145 ||||| || ||||| | || || || |||||||| || ||||| || || | | | Sbjct 6971856 GGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAGA---AA 6971912 Query 133146 TTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTG 133202 || | ||| |||| | ||| ||||| |||||| ||||||||| || || Sbjct 6971913 TTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATG 6971972 Query 133203 TACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTC 133262 || ||| |||||||| ||||| ||||| || || || | |||||| | ||| ||||| Sbjct 6971973 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTC 6972032 Query 133263 TTGAGCGAAAC-GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGG 133321 ||| || |||| |||| |||| ||||| || || ||||| || || || || || || | Sbjct 6972033 TTG-GCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAG 6972091 Query 133322 CCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGT 133381 ||||||| || || |||| | ||| | |||| | ||||||| | ||| Sbjct 6972092 CCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGT 6972151 Query 133382 CCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATAC 133441 ||||||| |||||||||||||| | |||||||| || ||||| ||||| || ||||| Sbjct 6972152 CCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCT 6972211 Query 133442 TCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 ||| || || |||| || ||||| || ||||| ||||| |||||||| Sbjct 6972212 GCCAAATATCATGGTATTCGATAGGAAAGATGACAAAGCGGCGTGGGTTTTC 6972263 >seq899 Length=2520420 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| ||||||||| | || || ||| ||| Sbjct 2264628 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2264569 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| || ||| | ||||| Sbjct 2264568 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 2264510 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 2264509 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 2264450 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || ||||| ||||| ||||| ||||| || || Sbjct 2264449 CATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 2264402 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| ||||||||| | || || ||| ||| Sbjct 2264856 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2264797 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| || ||| | ||||| Sbjct 2264796 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 2264738 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 2264737 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 2264678 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || ||||| |||| || || | ||||| || Sbjct 2264677 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 2264630 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| ||||||||| | || || ||| ||| Sbjct 2265084 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2265025 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| || ||| | ||||| Sbjct 2265024 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 2264966 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 2264965 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 2264906 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || ||||| |||| || || | ||||| || Sbjct 2264905 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 2264858 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| ||||||||| | || || ||| ||| Sbjct 2265312 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCTTGGAGGTGGAGCCCAGT 2265253 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| || ||| | ||||| Sbjct 2265252 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 2265194 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || ||||||||||| || | |||||||| |||||||| Sbjct 2265193 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 2265134 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || ||||| |||| || || | ||||| || Sbjct 2265133 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 2265086 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || ||||| || ||||| || |||||||| || | || || ||| | | Sbjct 2265541 AATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATTACTCTGGAGGTGGAGCCAAG 2265482 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | || || | || ||||| || || ||| | ||||| Sbjct 2265481 TGACACCATCGAGAATGTCAAGGTGAAGATACAAGAAAAAGAAGGCATCCCCCCAGACCA 2265422 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| || | || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 2265421 ACAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 2265362 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || ||||| |||| || || | ||||| || Sbjct 2265361 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 2265314 >seq6889 Length=11136585 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| ||||| || || ||||| ||||||||| | || || ||| || Sbjct 1034466 AAAATGCAAATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 1034407 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| || || || || |||||| | ||| Sbjct 1034406 AGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGAC 1034347 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| ||||||| | || ||||| |||||||| || | ||||| || || ||| Sbjct 1034346 CAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 1034287 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| |||| ||||| |||| || ||| |||| || || Sbjct 1034286 AACATCCAGAAGGAGTCGACCCTGCACCTGGTTCTCCGTCTGAGGGGTGG 1034237 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 1034235 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTAGAGCCCAGT 1034176 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || |||||| | ||||| Sbjct 1034175 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCA 1034117 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | || ||||| |||||||| || ||||| || || ||||| Sbjct 1034116 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATTGCCGCACTCTTTCTGATTACAA 1034057 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || |||| ||||| |||| | ||| |||| || || Sbjct 1034056 CATCCAGAAAGAGTCGACCCTGCACCTGGTAGTCCGTCTGAGGGGTGG 1034009 >seq9853 Length=4041771 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| | |||||| |||||||| | || |||||| ||| Sbjct 360009 ATGCAGATCTTTGTGAAGACGCTGATGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 359950 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | |||| ||||||| ||| | ||||| || || | ||||| Sbjct 359949 GACACCATTGAAAGTGTCAAAGCCAAAATCCAAGACGAGGAGGGCATCCCACCAGACCAG 359890 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | | | |||||||||||| | || | ||||| || |||||||| Sbjct 359889 CAGCGTCTGATCTTCTCCGGCAAACAGCTGCAGGATGGCCGCACTCTGTCAGACTACAAT 359830 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || || ||||| ||||||| ||| || |||||||| Sbjct 359829 ATCCAGAAAGAGTTCACCCTGCACCTGGTGCTTCGTCTGCGAGGCGGC 359782 >seq12661 Length=3984070 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| ||||||||| | || |||||| ||| Sbjct 2676455 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 2676514 Query 38304 GACAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || || | | |||| ||||||| ||||| ||||| || || | ||||| Sbjct 2676515 GACACTACTGAGAATG-TCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCA 2676573 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | || || | ||||||||||||||||| || | | ||| | |||||||| Sbjct 2676574 GCAGTGTCTGATCTTTGCGGGCAAACAGCTGGAGGATGGCCTCACTTTGTCAGACTACAA 2676633 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || | || ||||| ||||||| ||| || ||||||| Sbjct 2676634 TATCCAGAAAGAGTCCACCCTGCACCTGGTGCTTCGTCTGCAAGGCGGC 2676682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500078648722560