Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_014461.1 Length=73453 Score E Sequences producing significant alignments: (Bits) Value seq15007 87.8 8e-13 seq7994 82.4 4e-11 >seq15007 Length=612 Score = 87.8 bits (96), Expect = 8e-13 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 61289 AGCGGCCTTT-GCCTCGTTAGCTCAGTTGGTAGAGCTGCCGACTCTTAATCGGTAGGTCG 61347 ||||| |||| | |||||||||||||||||||||| || |||| |||||| || ||||| Sbjct 238 AGCGGTCTTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGCGGACTTTTAATCCGTTGGTCG 297 Query 61348 CAGGTTCAAATCCTGCACGG 61367 ||||||| | ||| |||||| Sbjct 298 CAGGTTCGAGTCCCGCACGG 317 >seq7994 Length=80430 Score = 82.4 bits (90), Expect = 4e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 61300 CCTCGTTAGCTCAGTTGGTAGAGCTGCCGACTCTTAATCGGTAGGTCGCAGGTTCAAATC 61359 ||||| |||||||||||||||||| | ||||| ||||||| |||||||||||| | || Sbjct 67717 CCTCGGTAGCTCAGTTGGTAGAGCAGGCGACTGTTAATCGCCGGGTCGCAGGTTCGAGTC 67658 Query 61360 CTGCACGGGG 61369 |||| ||||| Sbjct 67657 CTGCCCGGGG 67648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 234881683884386