Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_014467.1 Length=176788 Score E Sequences producing significant alignments: (Bits) Value seq9470 93.3 5e-14 seq7053 87.8 2e-12 seq6415 87.8 2e-12 >seq9470 Length=127963 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 40061 CATCGTTTCCGCCTGGAACCCTGTTGATCTTGATGATATGGCTTTGCGTCCGTGTCACTG 40120 |||||| || ||||||||||| | || | || || ||||| ||| ||||| ||||| Sbjct 52878 CATCGTCTCGGCCTGGAACCCGGCCGACGTCGACGACATGGCCCTGCCGCCGTGCCACTG 52819 Query 40121 TTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGT 40180 | ||||||||| |||| |||| |||||||| | | || ||||| || | Sbjct 52818 CCTGTTCCAGTTCTTCGTGGCGGACGGAAAACTGTCCTGCCTGCTTTACCAGCGCTCGGC 52759 Query 40181 TGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCTGAC 40231 || | ||| | || |||||||||| |||||||||||||| || ||||| Sbjct 52758 CGACCTGTTCCTCGGCGTGCCGTTCAACATCGCCTCCTACGCCCTGCTGAC 52708 >seq7053 Length=464797 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 40061 CATCGTTTCCGCCTGGAACCCTGTTGATCTTGATGATATGGCTTTGCGTCCGTGTCACTG 40120 ||||||||| || |||||||| | | || || ||||| |||| || |||||||| Sbjct 70514 CATCGTTTCGGCGTGGAACCCGGCGCTGGTGGACGAAATGGCGTTGCCGCCCTGTCACTG 70455 Query 40121 TTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGT 40180 | ||||||||| || | | || || ||||| ||| |||||||| || | Sbjct 70454 CCTGTTCCAGTTCTATGTTTCCGATGGAAAGCTGTCCTGCCAGCTCTATCAGCGCTCTGC 70395 Query 40181 TGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCTGAC 40231 ||| ||||| | || |||||||||| ||||||||||| || || ||||| Sbjct 70394 CGATATCTTCCTCGGCGTGCCGTTCAACATCGCCTCCTATGCGCTGCTGAC 70344 >seq6415 Length=247467 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 40061 CATCGTTTCCGCCTGGAACCCTGTTGATCTTGATGATATGGCTTTGCGTCCGTGTCACTG 40120 |||||| | ||||||||||| | ||| | || || ||||| ||| || || ||||| Sbjct 53295 CATCGTCACGGCCTGGAACCCCGCCGATGTCGACGACATGGCCCTGCCGCCCTGCCACTG 53354 Query 40121 TTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGT 40180 | ||||||||| |||| |||| || ||| ||| ||||| || | Sbjct 53355 CCTGTTCCAGTTCTTCGTCGCGGACGGAAAGCTGAGCTGCCAGCTCTATCAACGCAGCGC 53414 Query 40181 TGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCTGAC 40231 || || ||||||||| |||||||||| |||||||||||||| || ||||| Sbjct 53415 CGACGTGTTCTTAGGGGTGCCGTTCAACATCGCCTCCTACGCCCTGCTGAC 53465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565487134074720