Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq9432 93.3 6e-14 seq9573 87.8 3e-12 seq15007 86.0 9e-12 seq9777 86.0 9e-12 seq11622 84.2 3e-11 >seq9432 Length=33926 Score = 93.3 bits (102), Expect = 6e-14 Identities = 73/86 (85%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 189963 TGGTGCGGATGGTCGGACTCGAACCGACACGCCTAT-GGCGCTAGAACCTAAATCTAGTG 190021 ||||||||||| ||||||||||| ||||||| |||||| ||||||||||| |||| Sbjct 32668 TGGTGCGGATGAGAGGACTCGAACCTCCACGCCTCGCGGCGCTGGAACCTAAATCCAGTG 32609 Query 190022 CGTCTGCCAATTTCGCCACATCCGCG 190047 ||||| ||| || ||||||||||||| Sbjct 32608 CGTCTACCAGTTCCGCCACATCCGCG 32583 >seq9573 Length=73825 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 193688 AGCGGGAGGTGGATTTGAACCACCGACCTTTAGCTTATGAGGCTAACGAGATTCCAGACT 193747 |||||||| ||||||||||||||||||||| | ||||||| | ||||| | ||||||| Sbjct 69175 AGCGGGAGCTGGATTTGAACCACCGACCTTCGGGTTATGAGCCCGACGAGCTACCAGACT 69116 Query 193748 TCTCCATCCCGCTTCA 193763 ||||||||||| ||| Sbjct 69115 GCTCCATCCCGCATCA 69100 >seq15007 Length=612 Score = 86.0 bits (94), Expect = 9e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 191862 TGGTGCGCCGTGATGGACTCGAACCATCGACCCTCGGATTAAAAGTCCGATGCTCTACCA 191921 |||| |||||| ||||||||||| ||||| ||||||||||||||| |||||||||| Sbjct 324 TGGTAGGCCGTGCGGGACTCGAACCTGCGACCAACGGATTAAAAGTCCGCTGCTCTACCA 265 Query 191922 ACTAAGCTAACG 191933 ||| |||||||| Sbjct 264 ACTGAGCTAACG 253 >seq9777 Length=39614 Score = 86.0 bits (94), Expect = 9e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 191862 TGGTGCGCCGTGATGGACTCGAACCATCGACCCTCGGATTAAAAGTCCGATGCTCTACCA 191921 ||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||| Sbjct 5206 TGGTGGGCCGTGATGGATTCGAACCATCGACCAAAAGATTAAAAGTCTTCTGCTCTACCG 5147 Query 191922 ACTAAGCTAACGGCGCGTTG 191941 ||| |||||||||| | ||| Sbjct 5146 ACTGAGCTAACGGCCCATTG 5127 >seq11622 Length=276999 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 193688 AGCGGGAGGTGGATTTGAACCACCGACCTTTAGCTTATGAGGCTAACGAGATTCCAGACT 193747 |||||||| ||||||||||||| ||||||| | ||||||| | ||||| | ||||||| Sbjct 87354 AGCGGGAGCTGGATTTGAACCAACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGACT 87295 Query 193748 TCTCCATCCCGCTTCA 193763 ||||||||||| ||| Sbjct 87294 GCTCCATCCCGCATCA 87279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720593931661920