Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq5744 140 1e-27 seq8237 118 4e-21 seq504 109 2e-18 seq3764 107 8e-18 seq8560 104 9e-17 seq90 100 1e-15 seq7795 95.1 5e-14 seq9216 89.7 2e-12 seq7507 89.7 2e-12 seq6590 89.7 2e-12 seq10635 87.8 7e-12 seq8939 86.0 2e-11 seq9007 84.2 9e-11 >seq5744 Length=65993 Score = 140 bits (154), Expect = 1e-27 Identities = 242/348 (70%), Gaps = 18/348 (5%) Strand=Plus/Plus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 ||||||||| |||| || ||| | ||| | ||| |||| || || || || ||||| Sbjct 14232 AAAATGAAAAAAACTGCGGAAGATTATTTAGGTGAAACAGTAACAGAAGCTGTTATTACA 14291 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 ||||| ||||| ||||||||||||||||| |||||||| |||||||| || | ||||||| Sbjct 14292 GTTCCTGCTTACTTCAATGATGCACAACGTCAAGCAACAAAAGATGCTGGTCGTATTGCT 14351 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453 ||| || | ||| || || ||||| ||||| || || ||||| || || | || | Sbjct 14352 GGTCTAGAAGTTAAACGTATCATTAACGAACCAACTGCTGCTGCACTTGCGTTCGGTAT- 14410 Query 451454 GGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 ||| || |||||| || || || || |||| ||| || ||||| || || Sbjct 14411 GGACAA--AAAAGA---AGGCGACCGTAAAGTTGCTGTATATGACTTAGGTGGTGGTACA 14465 Query 451514 CATGATACTTCTGTACTTTCAAT---TGA---AGATGGGG------TATTTGAAGTAAAG 451561 ||| || | || ||| ||| |||||| | | | |||||| | Sbjct 14466 TTTGACGTATCAATCATTGAAATCGCTGACTTAGATGGCGACCAACAAATCGAAGTATTG 14525 Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCA 451609 |||||||||||||||| || || |||||||| ||||||||||| Sbjct 14526 TCAACCAATGGTGATACATTCCTTGGTGGTGAAGACTTTGATAATGCA 14573 >seq8237 Length=506431 Score = 118 bits (130), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 63857 TCCACCAATTATTTAAATTACCATCCGCATCAAATCTTTTTCCTTGATCATCAAACCCAT 63916 |||||||||| || | ||| || ||||||| | ||||| |||||||| |||| Sbjct 372474 TCCACCAATTTTTCATATTGCCCAATTCATCAAACTGACTGCCTTGGTCATCAAAGCCAT 372533 Query 63917 GAGTGATTTCATGAGCTATAACTACTCCAATTCCTCCATAATTTTGTGCA--ATCGTATA 63974 || |||| ||||| | |||| | | ||||| | ||||| || |||| |||| Sbjct 372534 GACTGATCTCATGTCCGATAATTGCCCCAATCGCACCATAGTTCACTGCATCATCGGC-- 372591 Query 63975 ATCTAAACTaaaaaaaGGTGGTTGTAAAATAGCAGCTGGAAATACAATTTCATTTAATAA 64034 ||| | | ||| || || ||||||||||| || |||||||| ||||||||||||||| | Sbjct 372592 ATCCATATCAAAGAATGGAGGTTGTAAAATGGCTGCTGGAAAGACAATTTCATTTAATGA 372651 Query 64035 AGGATGATAATAAGCATT 64052 || || ||||||||||| Sbjct 372652 AGCATTGTAATAAGCATT 372669 >seq504 Length=1076656 Score = 109 bits (120), Expect = 2e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || ||||| || || || || |||||||| || || | || Sbjct 268278 ATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTTGACGTCGAGCCCTCG 268337 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| | ||| | || | || || || ||||||||||||||||||||||| || Sbjct 268338 GATACAACAGAAAACGTAAAGCCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 268397 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||||| ||||||||| | |||||| | || || || Sbjct 268398 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAAC 268457 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| || |||| |||| || ||||| Sbjct 268458 ATTCAAAAGGAGTTCACTCTTCGTCTAGTGTTGAGACT 268495 >seq3764 Length=1885950 Score = 107 bits (118), Expect = 8e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115 |||||||| || || |||| || || || || |||||||| || || | || |||| Sbjct 1780098 ATTTTCGTGAAGACCCTGAGGGGGAAGACCATCACTCTTGAGGTCGAGCCCTCGGATACA 1780157 Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175 || | | | | || || || || ||||||||||||||||||||||| || ||| | Sbjct 1780158 ATAGGAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGA 1780217 Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGAT 391235 | || || || || ||||| ||||||||| | |||||| | || || || ||| | Sbjct 1780218 CTGATCTTTGTTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAA 1780277 Query 391236 AAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||||| | || ||||| |||| || ||||| Sbjct 1780278 AAGGAGTCCACTCTTCATCTAGTGTTGAGACT 1780309 >seq8560 Length=3069389 Score = 104 bits (114), Expect = 9e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACT-GACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 ||| | ||||| || || || || ||| || || || || ||||| | || || | || Sbjct 2390075 ATGCAGATTTTTGTGAAGACTCTTGACAGGGAAGACCATCACTCTCAAGGTCGAGCCCTC 2390134 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || |||| | | | || || || ||||||||||||||||||||||| || Sbjct 2390135 TGATACAATAGAAGATGTAATGGTCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA-CA 2390193 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| | | || || | || || ||| | ||||||||| | |||||| | || || || Sbjct 2390194 GCAAAGACTGATCTTTGCTGGAAAGCAAGTGGAAGATGGACGTACTTTGTCTGACTACAA 2390253 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| ||||| || ||||| Sbjct 2390254 CATTCAAAAGGAGTCCACTCTTCATTTAGTGTTGAGACT 2390292 >seq90 Length=1189934 Score = 100 bits (110), Expect = 1e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 98075 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 98016 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| || ||||| | | || || ||||| || Sbjct 98015 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 97963 >seq7795 Length=2761246 Score = 95.1 bits (104), Expect = 5e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| | || || | || || || || ||||||||||| | || || || || || Sbjct 2522603 GTTACCAACGCTGTTGTCACAGTACCTGCCTATTTCAATGACTCTCAGCGTCAGGCTACC 2522544 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| |||||||||| | ||||| |||||||| || ||||| || || || Sbjct 2522543 AAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTCGAATCATCAATGAGCCAACTGCT 2522484 Query 451433 GCTGCTCTAGCATATGG 451449 |||||| | || ||||| Sbjct 2522483 GCTGCTATTGCCTATGG 2522467 Score = 84.2 bits (92), Expect = 9e-11 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 452230 TGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAA 452289 |||||| |||||||| ||||| ||||| || || || | ||| || || Sbjct 2521158 TGAAGGTGAACGTGCCATGACCAAGGATAACAACCTGCTGGGCAAGTTTGAACTCACAGG 2521099 Query 452290 CATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAA 452349 ||| |||||| || |||| |||||| |||||| | || | |||| ||||||| || Sbjct 2521098 CATACCTCCTGCCCCCCGGGGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAA 2521039 Query 452350 TGGTATTCTTAATGTGAGTGCAGTTGAAAA-ATCATCTGGAAAATCAGAAAAA-ATTACA 452407 ||| ||||| ||||| ||| || || || | || | |||||| |||| || ||||| Sbjct 2521038 TGGCATTCTCAATGTTTCTGCTGTGGATAAGAGCA-CAGGAAAAG-AGAACAAGATTACC 2520981 Query 452408 ATTACTAATGATAA 452421 || ||||||||||| Sbjct 2520980 ATCACTAATGATAA 2520967 >seq9216 Length=6899875 Score = 89.7 bits (98), Expect = 2e-12 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||| | || || ||||| | || || || |||||||| || | | || Sbjct 1291323 ATGCAGATTTTCATGAAGACCCTGACAGTGAAGACCATCACTCTTGAGGTCAAGCCCTCG 1291382 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || | | | | || || || || |||||||||||||||| |||||| || Sbjct 1291383 GATACAATAGTAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCTTCCTGACCAC 1291442 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||||| ||||||||| | |||||| | || || || Sbjct 1291443 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAAC 1291502 Query 391230 ATTGATAAGGATGCAACACTTC 391251 ||| | ||||| | || |||| Sbjct 1291503 ATTCAAAAGGAGCCCACTCTTC 1291524 >seq7507 Length=3417960 Score = 89.7 bits (98), Expect = 2e-12 Identities = 168/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106 |||||| | |||||||||||| || || || ||||| ||| || | || | || | Sbjct 3081818 TGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAATG 3081875 Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166 |||||||| |||||| ||| |||| || || ||| | | ||| |||||| | | Sbjct 3081876 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCGAGA 3081935 Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226 ||||| || || | ||||||||||||||||||| ||| ||||| || ||| Sbjct 3081936 CAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTA 3081995 Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286 || || || | || || ||| ||||||| |||| || |||||| || || | | Sbjct 3081996 GGTGGTTTGAAGGGGTAATCTGTAGGAAAATGAATTGTCAAAAAGAATACACCGCCTTGA 3082055 Query 96287 TAGGG 96291 || || Sbjct 3082056 TATGG 3082060 >seq6590 Length=8745084 Score = 89.7 bits (98), Expect = 2e-12 Identities = 168/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106 |||||| | |||||||||||| || || || ||||| ||| || | || | || | Sbjct 5624849 TGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAATG 5624792 Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166 |||||||| |||||| ||| |||| || || ||| | | ||| |||||| | | Sbjct 5624791 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCGAGA 5624732 Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226 ||||| || || | ||||||||||||||||||| ||| ||||| || ||| Sbjct 5624731 CAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTA 5624672 Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286 || || || | || || ||| ||||||| |||| || |||||| || || | | Sbjct 5624671 GGTGGTTTGAAGGGGTAATCTGTAGGAAAATGAATTGTCAAAAAGAATACACCGCCTTGA 5624612 Query 96287 TAGGG 96291 || || Sbjct 5624611 TATGG 5624607 >seq10635 Length=172665 Score = 87.8 bits (96), Expect = 7e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || || |||||||| |||||||||||| || || |||||||| ||||| || Sbjct 134147 GCGGTCATCACCGTTCCCGCGTATTTCAATGATAGCCAGCGCCAAGCAACCAAAGACGCT 134206 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | || || || | ||||||| || || ||||| ||||| || || ||||| || Sbjct 134207 GGCAAGATCGCCGGACTCGATGTTCTGCGCATCATTAACGAACCGACCGCCGCTGCGCTC 134266 Query 451442 GCATATGGACT 451452 || ||||| || Sbjct 134267 GCGTATGGTCT 134277 >seq8939 Length=223461 Score = 86.0 bits (94), Expect = 2e-11 Identities = 95/126 (75%), Gaps = 3/126 (2%) Strand=Plus/Plus Query 127419 ATATGCTTCCGAAATTTCTTTAAATTTTTGTTCAGCTTCTTGTTTGTTATTTTGATTCTT 127478 ||||||||||| | ||||||||| |||| |||||||||| |||| | |||| Sbjct 187611 ATATGCTTCCGCACATTCTTTAAACTTTTCTTCAGCTTCTGAGTTGTCAG---GATTACG 187667 Query 127479 ATCAGGATGATGTTTAACAGCTAATTTACGGTAAGCTTTTTTAATTTCTGCTTCAGTAGC 127538 ||| ||||||| || | || || |||||||| |||||||||||||| | ||| |||| Sbjct 187668 ATCTGGATGATACTTCATCGCCAACTTACGGTAGGCTTTTTTAATTTCATCATCACTAGC 187727 Query 127539 ATTTTT 127544 |||| Sbjct 187728 GGTTTT 187733 >seq9007 Length=7446402 Score = 84.2 bits (92), Expect = 9e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||| ||||| || || || |||| ||||||| ||||| | ||||||||||| Sbjct 1678115 GCCACTAAGGATGCTGGCCAGATATCTGGACTAAATGTGCTTCGGGTAATTAATGAACCC 1678174 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 ||||| |||||||| || ||||| || | |||||| |||| Sbjct 1678175 ACAGCCGCTGCTCTGGCTTATGGTCTGGACAAATCAGAAGA 1678215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975337198100372