Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq5744 140 1e-27
seq8237 118 4e-21
seq504 109 2e-18
seq3764 107 8e-18
seq8560 104 9e-17
seq90 100 1e-15
seq7795 95.1 5e-14
seq9216 89.7 2e-12
seq7507 89.7 2e-12
seq6590 89.7 2e-12
seq10635 87.8 7e-12
seq8939 86.0 2e-11
seq9007 84.2 9e-11
>seq5744
Length=65993
Score = 140 bits (154), Expect = 1e-27
Identities = 242/348 (70%), Gaps = 18/348 (5%)
Strand=Plus/Plus
Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333
||||||||| |||| || ||| | ||| | ||| |||| || || || || |||||
Sbjct 14232 AAAATGAAAAAAACTGCGGAAGATTATTTAGGTGAAACAGTAACAGAAGCTGTTATTACA 14291
Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393
||||| ||||| ||||||||||||||||| |||||||| |||||||| || | |||||||
Sbjct 14292 GTTCCTGCTTACTTCAATGATGCACAACGTCAAGCAACAAAAGATGCTGGTCGTATTGCT 14351
Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453
||| || | ||| || || ||||| ||||| || || ||||| || || | || |
Sbjct 14352 GGTCTAGAAGTTAAACGTATCATTAACGAACCAACTGCTGCTGCACTTGCGTTCGGTAT- 14410
Query 451454 GGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513
||| || |||||| || || || || |||| ||| || ||||| || ||
Sbjct 14411 GGACAA--AAAAGA---AGGCGACCGTAAAGTTGCTGTATATGACTTAGGTGGTGGTACA 14465
Query 451514 CATGATACTTCTGTACTTTCAAT---TGA---AGATGGGG------TATTTGAAGTAAAG 451561
||| || | || ||| ||| |||||| | | | |||||| |
Sbjct 14466 TTTGACGTATCAATCATTGAAATCGCTGACTTAGATGGCGACCAACAAATCGAAGTATTG 14525
Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCA 451609
|||||||||||||||| || || |||||||| |||||||||||
Sbjct 14526 TCAACCAATGGTGATACATTCCTTGGTGGTGAAGACTTTGATAATGCA 14573
>seq8237
Length=506431
Score = 118 bits (130), Expect = 4e-21
Identities = 146/198 (74%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 63857 TCCACCAATTATTTAAATTACCATCCGCATCAAATCTTTTTCCTTGATCATCAAACCCAT 63916
|||||||||| || | ||| || ||||||| | ||||| |||||||| ||||
Sbjct 372474 TCCACCAATTTTTCATATTGCCCAATTCATCAAACTGACTGCCTTGGTCATCAAAGCCAT 372533
Query 63917 GAGTGATTTCATGAGCTATAACTACTCCAATTCCTCCATAATTTTGTGCA--ATCGTATA 63974
|| |||| ||||| | |||| | | ||||| | ||||| || |||| ||||
Sbjct 372534 GACTGATCTCATGTCCGATAATTGCCCCAATCGCACCATAGTTCACTGCATCATCGGC-- 372591
Query 63975 ATCTAAACTaaaaaaaGGTGGTTGTAAAATAGCAGCTGGAAATACAATTTCATTTAATAA 64034
||| | | ||| || || ||||||||||| || |||||||| ||||||||||||||| |
Sbjct 372592 ATCCATATCAAAGAATGGAGGTTGTAAAATGGCTGCTGGAAAGACAATTTCATTTAATGA 372651
Query 64035 AGGATGATAATAAGCATT 64052
|| || |||||||||||
Sbjct 372652 AGCATTGTAATAAGCATT 372669
>seq504
Length=1076656
Score = 109 bits (120), Expect = 2e-18
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||||| || || ||||| || || || || |||||||| || || | ||
Sbjct 268278 ATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTTGACGTCGAGCCCTCG 268337
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| | ||| | || | || || || ||||||||||||||||||||||| ||
Sbjct 268338 GATACAACAGAAAACGTAAAGCCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 268397
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||| | | || || | || || ||||| ||||||||| | |||||| | || || ||
Sbjct 268398 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAAC 268457
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267
||| | ||||| || |||| |||| || |||||
Sbjct 268458 ATTCAAAAGGAGTTCACTCTTCGTCTAGTGTTGAGACT 268495
>seq3764
Length=1885950
Score = 107 bits (118), Expect = 8e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115
|||||||| || || |||| || || || || |||||||| || || | || ||||
Sbjct 1780098 ATTTTCGTGAAGACCCTGAGGGGGAAGACCATCACTCTTGAGGTCGAGCCCTCGGATACA 1780157
Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175
|| | | | | || || || || ||||||||||||||||||||||| || ||| |
Sbjct 1780158 ATAGGAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGA 1780217
Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGAT 391235
| || || || || ||||| ||||||||| | |||||| | || || || ||| |
Sbjct 1780218 CTGATCTTTGTTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAA 1780277
Query 391236 AAGGATGCAACACTTCACTTAGTATTAAGACT 391267
||||| | || ||||| |||| || |||||
Sbjct 1780278 AAGGAGTCCACTCTTCATCTAGTGTTGAGACT 1780309
>seq8560
Length=3069389
Score = 104 bits (114), Expect = 9e-17
Identities = 156/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACT-GACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
||| | ||||| || || || || ||| || || || || ||||| | || || | ||
Sbjct 2390075 ATGCAGATTTTTGTGAAGACTCTTGACAGGGAAGACCATCACTCTCAAGGTCGAGCCCTC 2390134
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || |||| | | | || || || ||||||||||||||||||||||| ||
Sbjct 2390135 TGATACAATAGAAGATGTAATGGTCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA-CA 2390193
Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228
||| | | || || | || || ||| | ||||||||| | |||||| | || || ||
Sbjct 2390194 GCAAAGACTGATCTTTGCTGGAAAGCAAGTGGAAGATGGACGTACTTTGTCTGACTACAA 2390253
Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267
||| | ||||| | || ||||| ||||| || |||||
Sbjct 2390254 CATTCAAAAGGAGTCCACTCTTCATTTAGTGTTGAGACT 2390292
>seq90
Length=1189934
Score = 100 bits (110), Expect = 1e-15
Identities = 90/113 (80%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372
|||||| ||||||| ||||||| || || |||||||||||||| ||||| || |||||
Sbjct 98075 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 98016
Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425
|||||||| ||| ||||||||| || ||||| | | || || ||||| ||
Sbjct 98015 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 97963
>seq7795
Length=2761246
Score = 95.1 bits (104), Expect = 5e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372
||||| | || || | || || || || ||||||||||| | || || || || ||
Sbjct 2522603 GTTACCAACGCTGTTGTCACAGTACCTGCCTATTTCAATGACTCTCAGCGTCAGGCTACC 2522544
Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432
|||||||| ||| |||||||||| | ||||| |||||||| || ||||| || || ||
Sbjct 2522543 AAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTCGAATCATCAATGAGCCAACTGCT 2522484
Query 451433 GCTGCTCTAGCATATGG 451449
|||||| | || |||||
Sbjct 2522483 GCTGCTATTGCCTATGG 2522467
Score = 84.2 bits (92), Expect = 9e-11
Identities = 138/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 452230 TGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAA 452289
|||||| |||||||| ||||| ||||| || || || | ||| || ||
Sbjct 2521158 TGAAGGTGAACGTGCCATGACCAAGGATAACAACCTGCTGGGCAAGTTTGAACTCACAGG 2521099
Query 452290 CATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAA 452349
||| |||||| || |||| |||||| |||||| | || | |||| ||||||| ||
Sbjct 2521098 CATACCTCCTGCCCCCCGGGGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAA 2521039
Query 452350 TGGTATTCTTAATGTGAGTGCAGTTGAAAA-ATCATCTGGAAAATCAGAAAAA-ATTACA 452407
||| ||||| ||||| ||| || || || | || | |||||| |||| || |||||
Sbjct 2521038 TGGCATTCTCAATGTTTCTGCTGTGGATAAGAGCA-CAGGAAAAG-AGAACAAGATTACC 2520981
Query 452408 ATTACTAATGATAA 452421
|| |||||||||||
Sbjct 2520980 ATCACTAATGATAA 2520967
>seq9216
Length=6899875
Score = 89.7 bits (98), Expect = 2e-12
Identities = 141/202 (70%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||| | || || ||||| | || || || |||||||| || | | ||
Sbjct 1291323 ATGCAGATTTTCATGAAGACCCTGACAGTGAAGACCATCACTCTTGAGGTCAAGCCCTCG 1291382
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| || | | | | || || || || |||||||||||||||| |||||| ||
Sbjct 1291383 GATACAATAGTAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCTTCCTGACCAC 1291442
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||| | | || || | || || ||||| ||||||||| | |||||| | || || ||
Sbjct 1291443 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAAC 1291502
Query 391230 ATTGATAAGGATGCAACACTTC 391251
||| | ||||| | || ||||
Sbjct 1291503 ATTCAAAAGGAGCCCACTCTTC 1291524
>seq7507
Length=3417960
Score = 89.7 bits (98), Expect = 2e-12
Identities = 168/245 (69%), Gaps = 4/245 (2%)
Strand=Plus/Plus
Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106
|||||| | |||||||||||| || || || ||||| ||| || | || | || |
Sbjct 3081818 TGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAATG 3081875
Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166
|||||||| |||||| ||| |||| || || ||| | | ||| |||||| | |
Sbjct 3081876 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCGAGA 3081935
Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226
||||| || || | ||||||||||||||||||| ||| ||||| || |||
Sbjct 3081936 CAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTA 3081995
Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286
|| || || | || || ||| ||||||| |||| || |||||| || || | |
Sbjct 3081996 GGTGGTTTGAAGGGGTAATCTGTAGGAAAATGAATTGTCAAAAAGAATACACCGCCTTGA 3082055
Query 96287 TAGGG 96291
|| ||
Sbjct 3082056 TATGG 3082060
>seq6590
Length=8745084
Score = 89.7 bits (98), Expect = 2e-12
Identities = 168/245 (69%), Gaps = 4/245 (2%)
Strand=Plus/Minus
Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106
|||||| | |||||||||||| || || || ||||| ||| || | || | || |
Sbjct 5624849 TGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAATG 5624792
Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166
|||||||| |||||| ||| |||| || || ||| | | ||| |||||| | |
Sbjct 5624791 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCGAGA 5624732
Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226
||||| || || | ||||||||||||||||||| ||| ||||| || |||
Sbjct 5624731 CAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTA 5624672
Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286
|| || || | || || ||| ||||||| |||| || |||||| || || | |
Sbjct 5624671 GGTGGTTTGAAGGGGTAATCTGTAGGAAAATGAATTGTCAAAAAGAATACACCGCCTTGA 5624612
Query 96287 TAGGG 96291
|| ||
Sbjct 5624611 TATGG 5624607
>seq10635
Length=172665
Score = 87.8 bits (96), Expect = 7e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381
|| || || || |||||||| |||||||||||| || || |||||||| ||||| ||
Sbjct 134147 GCGGTCATCACCGTTCCCGCGTATTTCAATGATAGCCAGCGCCAAGCAACCAAAGACGCT 134206
Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441
|| | || || || | ||||||| || || ||||| ||||| || || ||||| ||
Sbjct 134207 GGCAAGATCGCCGGACTCGATGTTCTGCGCATCATTAACGAACCGACCGCCGCTGCGCTC 134266
Query 451442 GCATATGGACT 451452
|| ||||| ||
Sbjct 134267 GCGTATGGTCT 134277
>seq8939
Length=223461
Score = 86.0 bits (94), Expect = 2e-11
Identities = 95/126 (75%), Gaps = 3/126 (2%)
Strand=Plus/Plus
Query 127419 ATATGCTTCCGAAATTTCTTTAAATTTTTGTTCAGCTTCTTGTTTGTTATTTTGATTCTT 127478
||||||||||| | ||||||||| |||| |||||||||| |||| | ||||
Sbjct 187611 ATATGCTTCCGCACATTCTTTAAACTTTTCTTCAGCTTCTGAGTTGTCAG---GATTACG 187667
Query 127479 ATCAGGATGATGTTTAACAGCTAATTTACGGTAAGCTTTTTTAATTTCTGCTTCAGTAGC 127538
||| ||||||| || | || || |||||||| |||||||||||||| | ||| ||||
Sbjct 187668 ATCTGGATGATACTTCATCGCCAACTTACGGTAGGCTTTTTTAATTTCATCATCACTAGC 187727
Query 127539 ATTTTT 127544
||||
Sbjct 187728 GGTTTT 187733
>seq9007
Length=7446402
Score = 84.2 bits (92), Expect = 9e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426
|| ||||| ||||| || || || |||| ||||||| ||||| | |||||||||||
Sbjct 1678115 GCCACTAAGGATGCTGGCCAGATATCTGGACTAAATGTGCTTCGGGTAATTAATGAACCC 1678174
Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467
||||| |||||||| || ||||| || | |||||| ||||
Sbjct 1678175 ACAGCCGCTGCTCTGGCTTATGGTCTGGACAAATCAGAAGA 1678215
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975337198100372
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |