Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq9751 93.3 5e-14
seq10097 87.8 2e-12
>seq9751
Length=51986
Score = 93.3 bits (102), Expect = 5e-14
Identities = 249/376 (66%), Gaps = 20/376 (5%)
Strand=Plus/Minus
Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943
||| ||||| || || ||||| | | || | ||| | || |||| | || || |||||
Sbjct 9312 ACGGTCAAAACGGCCGGGGCGTAACAAAGCTTTATCCAAGACATCAGCACGGTTGGTTGC 9253
Query 15944 GGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003
|| || |||| | ||| | | | ||||| || |||||||| ||| | |||||
Sbjct 9252 AGCAATCACAATCACACCGGAATTGGCCTCAAAGCCGTCCATCTCCACCAACATTTGGTT 9193
Query 16004 AATAGTTTGTTCCCGTTCATCATT-----CGCTGGCATACCACCAGCACTGCGTTGCTTT 16058
|| ||||| || || || || || | | || |||| || ||| || |
Sbjct 9192 AAGGGTTTGCTCACGCTCGTCGTTACCACCACCGG--TACCTGCACCACGGCTACGG--- 9138
Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATG----GTTGATTTTCGCGAGCGAC 16114
|| || ||||||||||| ||||| |||| ||||| | ||| |||| ||||
Sbjct 9137 CCTACCGCATCAATCTCGTCAATAAAGATAATGCAAGGGGAGTTCTTTTT----AGCGGT 9082
Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174
|||||| | || || ||||| || || ||||| |||||||| || || |||| |
Sbjct 9081 TTCAAACATGTCACGCACACGTGCCGCACCTACACCGACAAACATTTCAACGAAGTCAGA 9022
Query 16175 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233
||||| || | | ||| || || || | |||||| |||||||| || || | | |
Sbjct 9021 ACCGGAA-ATCGTAAAGAACGGCACTTTGGCTTCACCGGCAATGGCACGTGCTAACAAGG 8963
Query 16234 TCTTACCCGTACCTGG 16249
| ||||| || || ||
Sbjct 8962 TTTTACCTGTCCCCGG 8947
>seq10097
Length=214583
Score = 87.8 bits (96), Expect = 2e-12
Identities = 275/416 (66%), Gaps = 10/416 (2%)
Strand=Plus/Plus
Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937
|| || ||| || ||||| || || || || || ||| ||||| | |||| || ||
Sbjct 47680 GACCTGACGGTCGAAGCGGCCGGGACGCAGAAGTGCGGGGTCAAGAACATCAGGACGGTT 47739
Query 15938 CGTTGCGGCGATGACAACAATACC-TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAA 15996
|| ||||| |||| | || || | |||| || || || ||||| || || |
Sbjct 47740 GGTGGCGGCAATGAGGATGATGCCCTCATTCGCC-TCGAAGCCGTCCATTTCGACCAGCA 47798
Query 15997 GCTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTG 16054
||||||| | || ||||| ||||| || || ||| | | ||| || | || ||
Sbjct 47799 GCTGGTTCAGCGTCTGTTCACGTTCGTCGTTACCGCCGCCGAG--ACCGGCGCCACGATG 47856
Query 16055 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGA 16113
|| |||||||| || || || ||||||| |||| | || ||| ||| | |
Sbjct 47857 GCGGCCGACGGCATCGATTTCGTCGATGAAGATGATGGAGGGCGCATTCTTCTTGGCCTG 47916
Query 16114 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 16173
|| | || | || || ||||| | ||||| || || || ||||| ||||| || | |
Sbjct 47917 CT-CGAACATGTCACGCACACGGCTTGCGCCGACGCCGACGAACATTTCCACGAAATCCG 47975
Query 16174 CGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 16232
||||| || | || |||||| || || | ||| || || | || || || || ||
Sbjct 47976 AACCGGAA-ATGGTGAAGAAGGGCACGTTGGCTTCGCCAGCGACGGAACGCGCCAGCAGC 48034
Query 16233 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288
||||||||||| || || || |||| || |||| || ||||| || ||||
Sbjct 48035 GTCTTACCCGTGCCCGGAGGGCCAACGAGCAGCACACCACGCGGAATTTTACCGCC 48090
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620625553002480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |