Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq9751 93.3 5e-14 seq10097 87.8 2e-12 >seq9751 Length=51986 Score = 93.3 bits (102), Expect = 5e-14 Identities = 249/376 (66%), Gaps = 20/376 (5%) Strand=Plus/Minus Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 ||| ||||| || || ||||| | | || | ||| | || |||| | || || ||||| Sbjct 9312 ACGGTCAAAACGGCCGGGGCGTAACAAAGCTTTATCCAAGACATCAGCACGGTTGGTTGC 9253 Query 15944 GGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003 || || |||| | ||| | | | ||||| || |||||||| ||| | ||||| Sbjct 9252 AGCAATCACAATCACACCGGAATTGGCCTCAAAGCCGTCCATCTCCACCAACATTTGGTT 9193 Query 16004 AATAGTTTGTTCCCGTTCATCATT-----CGCTGGCATACCACCAGCACTGCGTTGCTTT 16058 || ||||| || || || || || | | || |||| || ||| || | Sbjct 9192 AAGGGTTTGCTCACGCTCGTCGTTACCACCACCGG--TACCTGCACCACGGCTACGG--- 9138 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATG----GTTGATTTTCGCGAGCGAC 16114 || || ||||||||||| ||||| |||| ||||| | ||| |||| |||| Sbjct 9137 CCTACCGCATCAATCTCGTCAATAAAGATAATGCAAGGGGAGTTCTTTTT----AGCGGT 9082 Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 |||||| | || || ||||| || || ||||| |||||||| || || |||| | Sbjct 9081 TTCAAACATGTCACGCACACGTGCCGCACCTACACCGACAAACATTTCAACGAAGTCAGA 9022 Query 16175 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233 ||||| || | | ||| || || || | |||||| |||||||| || || | | | Sbjct 9021 ACCGGAA-ATCGTAAAGAACGGCACTTTGGCTTCACCGGCAATGGCACGTGCTAACAAGG 8963 Query 16234 TCTTACCCGTACCTGG 16249 | ||||| || || || Sbjct 8962 TTTTACCTGTCCCCGG 8947 >seq10097 Length=214583 Score = 87.8 bits (96), Expect = 2e-12 Identities = 275/416 (66%), Gaps = 10/416 (2%) Strand=Plus/Plus Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937 || || ||| || ||||| || || || || || ||| ||||| | |||| || || Sbjct 47680 GACCTGACGGTCGAAGCGGCCGGGACGCAGAAGTGCGGGGTCAAGAACATCAGGACGGTT 47739 Query 15938 CGTTGCGGCGATGACAACAATACC-TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAA 15996 || ||||| |||| | || || | |||| || || || ||||| || || | Sbjct 47740 GGTGGCGGCAATGAGGATGATGCCCTCATTCGCC-TCGAAGCCGTCCATTTCGACCAGCA 47798 Query 15997 GCTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTG 16054 ||||||| | || ||||| ||||| || || ||| | | ||| || | || || Sbjct 47799 GCTGGTTCAGCGTCTGTTCACGTTCGTCGTTACCGCCGCCGAG--ACCGGCGCCACGATG 47856 Query 16055 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGA 16113 || |||||||| || || || ||||||| |||| | || ||| ||| | | Sbjct 47857 GCGGCCGACGGCATCGATTTCGTCGATGAAGATGATGGAGGGCGCATTCTTCTTGGCCTG 47916 Query 16114 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 16173 || | || | || || ||||| | ||||| || || || ||||| ||||| || | | Sbjct 47917 CT-CGAACATGTCACGCACACGGCTTGCGCCGACGCCGACGAACATTTCCACGAAATCCG 47975 Query 16174 CGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 16232 ||||| || | || |||||| || || | ||| || || | || || || || || Sbjct 47976 AACCGGAA-ATGGTGAAGAAGGGCACGTTGGCTTCGCCAGCGACGGAACGCGCCAGCAGC 48034 Query 16233 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 ||||||||||| || || || |||| || |||| || ||||| || |||| Sbjct 48035 GTCTTACCCGTGCCCGGAGGGCCAACGAGCAGCACACCACGCGGAATTTTACCGCC 48090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620625553002480