Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq8237 158 1e-33 seq10097 122 1e-22 seq9639 114 2e-20 seq7818 107 2e-18 seq4752 98.7 1e-15 seq4411 98.7 1e-15 seq13197 96.9 4e-15 seq11214 93.3 5e-14 seq6811 82.4 9e-11 seq608 82.4 9e-11 >seq8237 Length=506431 Score = 158 bits (174), Expect = 1e-33 Identities = 270/384 (70%), Gaps = 22/384 (6%) Strand=Plus/Plus Query 11502 ACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGC 11561 ||| |||||||| || || || |||| || | ||| || | ||| |||||||||| || Sbjct 306009 ACGGTCGAAACGCCCCGGACGAAGTAATGCTTTATCCAGTACATCCGCACGGTTTGTTGC 306068 Query 11562 GGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAGAAGCTG 11618 |||||||| | ||| || ||||| |||||||| |||||||| || | || Sbjct 306069 AGCAATGACGATAATCCCT---TCATTCCCTTCGAAACCATCCATTTCAACAAGCATTTG 306125 Query 11619 GTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTG---CCGAAC---GCTT 11672 ||||| || |||||||| ||||| | | |||||||| | |||| | | Sbjct 306126 GTTGAGTGTTTGTTCACGTTCATCAT------GACCACCACCTGTACCTGAACCACGATG 306179 Query 11673 CTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT-GCCT 11731 |||||| || ||||||||||| || || | |||||| ||| | |||| | |||| Sbjct 306180 ACGACCGACTGCATCAATCTCATCAATAAAGATGATACATGGT-GCATGGCGTTTCGCCT 306238 Query 11732 GTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG 11791 ||||||| | ||||| ||||| || |||||||| |||||||| |||||||||| | Sbjct 306239 GTTCGAACATGTCACGCACACGAGATGCACCAACACCAACGAACATTTCAACGAAGTCAG 306298 Query 11792 CGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGA 11850 | | || ||| || ||| ||||| || | |||||||| || ||| || || | | Sbjct 306299 AACCTGAAATACT-AAAGAATGGAACTTTGGCTTCACCAGCAATCGCTTTCGCAAGTAAA 306357 Query 11851 GTCTTACCCGTACCAGGTGCACCA 11874 || ||||| ||||| || | |||| Sbjct 306358 GTTTTACCTGTACCTGGAGGACCA 306381 >seq10097 Length=214583 Score = 122 bits (134), Expect = 1e-22 Identities = 275/407 (68%), Gaps = 10/407 (2%) Strand=Plus/Plus Query 11499 CTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGT 11558 || ||| ||||| || || || || || || || ||||||| ||| |||||| || Sbjct 47683 CTGACGGTCGAAGCGGCCGGGACGCAGAAGTGCGGGGTCAAGAACATCAGGACGGTTGGT 47742 Query 11559 AGCGGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAGAAG 11615 |||||||||| | ||||| |||||| ||||| ||||||||||| || || Sbjct 47743 GGCGGCAATGAGGATGATGCC---CTCATTCGCCTCGAAGCCGTCCATTTCGACCAGCAG 47799 Query 11616 CTGGTTGATCGTCTGTTCACGCTCATCGTTGGAG-GGCATACCACCTGCCGAACGCTTCT 11674 |||||| | |||||||||||| || ||||| | || | ||| || ||| | Sbjct 47800 CTGGTTCAGCGTCTGTTCACGTTCGTCGTTACCGCCGCCGA-GACCGGCGCCACGATGGC 47858 Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734 ||||| || || || || |||||||| | ||| | || || ||||| | Sbjct 47859 GGCCGACGGCATCGATTTCGTCGATGAAGATGATGGAGGGCGCATTCTTCTTGGCCTGCT 47918 Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794 |||| | ||||| ||||| | || || || || |||||||| || ||||| | | Sbjct 47919 CGAACATGTCACGCACACGGCTTGCGCCGACGCCGACGAACATTTCCACGAAATCCGAAC 47978 Query 11795 CAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 | | || |||| |||||| || || | || ||||||| || || || || || ||| Sbjct 47979 CGGAAATGGTGAA-GAAGGGCACGTTGGCTTCGCCAGCGACGGAACGCGCCAGCAGCGTC 48037 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTT 11900 |||||||| || || | ||| |||| || | ||||| || || || Sbjct 48038 TTACCCGTGCCCGGAGGGCCAACGAGCAGCACACCACGCGGAATTTT 48084 >seq9639 Length=103419 Score = 114 bits (126), Expect = 2e-20 Identities = 269/398 (68%), Gaps = 10/398 (3%) Strand=Plus/Minus Query 11481 GGGGAGAGTCACCTGAATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAG 11540 ||| || ||||| | | || || |||||||| || ||||| || || || |||| || Sbjct 60832 GGGCAGCGTCACATACACCTGGCGGTCGAAACGGCCGGGGCGCAGCAGCGCCGCATCCAG 60773 Query 11541 AATATCGACACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTC 11600 || ||| |||||| || || || | ||| | | ||| | | ||||| ||||| Sbjct 60772 GATGTCGGGACGGTTGGTCGCAGCCACGACGATCACGCCGAGGTTGGTCTCGAAGCCGTC 60713 Query 11601 CATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTG-GAGGGCATACCA- 11658 ||| || || | |||||| | ||||||||||||||||||||| | || ||| Sbjct 60712 CATCTCGACCAGCATCTGGTTCAGGGTCTGTTCACGCTCATCGTTGCCACCGC---CCAG 60656 Query 11659 -CCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTG 11717 ||||| |||| || || ||||| || ||||||||||| | ||| || ||| Sbjct 60655 GCCTGCGCCGCGCTGGCGGCCCACGGCGTCGATTTCATCGATGAAGATGATGCAGGGTGC 60596 Query 11718 GTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACAT 11777 || || | ||||| | || || || || ||| || || || |||||||| Sbjct 60595 ATTCTTCTTGGCGTTCTCGAACATGTCGCGCACGCGGGCCGCGCCCACGCCGACGAACAT 60536 Query 11778 CTCAACGAAGTTTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGG 11836 || ||||||| | | | || | ||||| ||| || || || | ||||||||||||| Sbjct 60535 TTCCACGAAGTCGGAGCCCGAGATGCTGAA-GAACGGGACCTTGGCTTCACCAGCGATGG 60477 Query 11837 -CTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACC 11873 || | || || || ||||| || ||||| || | ||| Sbjct 60476 ACTTG-GCCAGCAGCGTCTTGCCGGTACCCGGAGGACC 60440 >seq7818 Length=8334 Score = 107 bits (118), Expect = 2e-18 Identities = 324/489 (66%), Gaps = 20/489 (4%) Strand=Plus/Minus Query 11499 CTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGT 11558 || ||| |||||||| || || || || || || || || | ||| ||||| || Sbjct 7183 CTGACGGTCGAAACGGCCAGGACGCAGCAGGGCCGGGTCGAGCACGTCGGGCCGGTTGGT 7124 Query 11559 AGCGGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAGAAG 11615 ||||| | | | ||||| ||| ||| ||||| |||||||| || || || Sbjct 7123 GGCGGCCACCAGGATGATGCC---CTCGTTGGCCTCGAAGCCGTCCATCTCGACCAGCAG 7067 Query 11616 CTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGG-GCATA--CCACCTGCCGAACGCTT 11672 |||| | | ||||| || ||||| |||||| | || | || | |||| || | Sbjct 7066 CTGGGTCAGGGTCTGCTCGCGCTCGTCGTTGCCGCCGCCGAGGCCGGC-GCCG--CGATG 7010 Query 11673 CTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTG 11732 ||||| ||||| || || |||||||| | ||| || || ||| ||||| Sbjct 7009 GCGGCCGACGGCGTCGATTTCGTCGATGAAGATGATGCAGGGGGCGTTCTTCTTGGCCTG 6950 Query 11733 TTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGC 11792 ||||| | || ||||| || | || || || || ||||||||||| ||||||| | Sbjct 6949 CTCGAACATGTCGCGTACGCGGCTGGCGCCGACGCCGACGAACATCTCGACGAAGTCCGA 6890 Query 11793 GGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851 | || | |||| ||| || || | ||| || |||||||| ||||| || || | Sbjct 6889 ACCGGAGATGGTGAA-GAACGGCACGCCCGCCTCGCCGGCGATGGCGCGAGCCAGCAGGG 6831 Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTG--GCACCACT 11909 |||||||||| || || | || || || ||||| |||||||||| || | || Sbjct 6830 TCTTACCCGTGCCGGGCGGGCCGATCAGCAGCGCGCCCTTGGGGATCTTGCCGCCCAGCT 6771 Query 11910 TC-CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGG 11968 || || | || | || | ||| ||||| || || ||||||| || || ||||||| Sbjct 6770 TCTGGAACTTGC---CCGGGTCCTTCAGGAAATCGACGATCTCCTGCAGCTCGTCCTTGG 6714 Query 11969 CGGAGTCGA 11977 | ||||| Sbjct 6713 CCTCGTCGA 6705 >seq4752 Length=355175 Score = 98.7 bits (108), Expect = 1e-15 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 143695 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACGGGTTCGATCCCCGT 143637 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 354830 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 354889 Query 136777 GGGAACAGCTTTTAGAT 136793 || ||| || |||| Sbjct 354890 CGGGCCAGGCTTAAGAT 354906 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 145410 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 145352 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 158300 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 158242 >seq4411 Length=2306675 Score = 98.7 bits (108), Expect = 1e-15 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 371588 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGAGCCCCGT 371530 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 350039 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 350097 >seq13197 Length=1288831 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 52609 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 52668 Query 136777 GGGAACAGCTTTT 136789 || || ||||| Sbjct 52669 CGGGCCAACTTTT 52681 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 22455 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 22396 Query 136777 GGGAACAGCTTTTAGAT 136793 || ||| || |||| Sbjct 22395 CGGGCCAGGCTTAAGAT 22379 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 9711 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 9769 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 260402 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 260344 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||| ||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 6957 TAGCTCAGTCGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 6899 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||| ||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 8036 TAGCTCAGTCGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 7978 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 |||||||||| |||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 413951 TAGCTCAGTTTGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 414009 >seq11214 Length=5586833 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 285139 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 285197 >seq6811 Length=5282013 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| | ||| | ||| || Sbjct 2650576 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGATTCTATCCCTGTA 2650517 Query 136777 GGGAACAGCTTTT 136789 || ||| |||| Sbjct 2650516 CGGGTCAGATTTT 2650504 >seq608 Length=3558542 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 119515 CTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCT 119574 ||||||| | |||||||||||| || ||||||||||||||||||||||||| Sbjct 2088602 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 2088543 Query 119575 TTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACA 119624 ||||||| || || ||| |||| ||| || ||||| || || || ||| Sbjct 2088542 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACA 2088493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588865132630200