Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq8237 158 1e-33
seq10097 122 1e-22
seq9639 114 2e-20
seq7818 107 2e-18
seq4752 98.7 1e-15
seq4411 98.7 1e-15
seq13197 96.9 4e-15
seq11214 93.3 5e-14
seq6811 82.4 9e-11
seq608 82.4 9e-11
>seq8237
Length=506431
Score = 158 bits (174), Expect = 1e-33
Identities = 270/384 (70%), Gaps = 22/384 (6%)
Strand=Plus/Plus
Query 11502 ACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGC 11561
||| |||||||| || || || |||| || | ||| || | ||| |||||||||| ||
Sbjct 306009 ACGGTCGAAACGCCCCGGACGAAGTAATGCTTTATCCAGTACATCCGCACGGTTTGTTGC 306068
Query 11562 GGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAGAAGCTG 11618
|||||||| | ||| || ||||| |||||||| |||||||| || | ||
Sbjct 306069 AGCAATGACGATAATCCCT---TCATTCCCTTCGAAACCATCCATTTCAACAAGCATTTG 306125
Query 11619 GTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTG---CCGAAC---GCTT 11672
||||| || |||||||| ||||| | | |||||||| | |||| | |
Sbjct 306126 GTTGAGTGTTTGTTCACGTTCATCAT------GACCACCACCTGTACCTGAACCACGATG 306179
Query 11673 CTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT-GCCT 11731
|||||| || ||||||||||| || || | |||||| ||| | |||| | ||||
Sbjct 306180 ACGACCGACTGCATCAATCTCATCAATAAAGATGATACATGGT-GCATGGCGTTTCGCCT 306238
Query 11732 GTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG 11791
||||||| | ||||| ||||| || |||||||| |||||||| |||||||||| |
Sbjct 306239 GTTCGAACATGTCACGCACACGAGATGCACCAACACCAACGAACATTTCAACGAAGTCAG 306298
Query 11792 CGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGA 11850
| | || ||| || ||| ||||| || | |||||||| || ||| || || | |
Sbjct 306299 AACCTGAAATACT-AAAGAATGGAACTTTGGCTTCACCAGCAATCGCTTTCGCAAGTAAA 306357
Query 11851 GTCTTACCCGTACCAGGTGCACCA 11874
|| ||||| ||||| || | ||||
Sbjct 306358 GTTTTACCTGTACCTGGAGGACCA 306381
>seq10097
Length=214583
Score = 122 bits (134), Expect = 1e-22
Identities = 275/407 (68%), Gaps = 10/407 (2%)
Strand=Plus/Plus
Query 11499 CTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGT 11558
|| ||| ||||| || || || || || || || ||||||| ||| |||||| ||
Sbjct 47683 CTGACGGTCGAAGCGGCCGGGACGCAGAAGTGCGGGGTCAAGAACATCAGGACGGTTGGT 47742
Query 11559 AGCGGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAGAAG 11615
|||||||||| | ||||| |||||| ||||| ||||||||||| || ||
Sbjct 47743 GGCGGCAATGAGGATGATGCC---CTCATTCGCCTCGAAGCCGTCCATTTCGACCAGCAG 47799
Query 11616 CTGGTTGATCGTCTGTTCACGCTCATCGTTGGAG-GGCATACCACCTGCCGAACGCTTCT 11674
|||||| | |||||||||||| || ||||| | || | ||| || ||| |
Sbjct 47800 CTGGTTCAGCGTCTGTTCACGTTCGTCGTTACCGCCGCCGA-GACCGGCGCCACGATGGC 47858
Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734
||||| || || || || |||||||| | ||| | || || ||||| |
Sbjct 47859 GGCCGACGGCATCGATTTCGTCGATGAAGATGATGGAGGGCGCATTCTTCTTGGCCTGCT 47918
Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794
|||| | ||||| ||||| | || || || || |||||||| || ||||| | |
Sbjct 47919 CGAACATGTCACGCACACGGCTTGCGCCGACGCCGACGAACATTTCCACGAAATCCGAAC 47978
Query 11795 CAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853
| | || |||| |||||| || || | || ||||||| || || || || || |||
Sbjct 47979 CGGAAATGGTGAA-GAAGGGCACGTTGGCTTCGCCAGCGACGGAACGCGCCAGCAGCGTC 48037
Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTT 11900
|||||||| || || | ||| |||| || | ||||| || || ||
Sbjct 48038 TTACCCGTGCCCGGAGGGCCAACGAGCAGCACACCACGCGGAATTTT 48084
>seq9639
Length=103419
Score = 114 bits (126), Expect = 2e-20
Identities = 269/398 (68%), Gaps = 10/398 (3%)
Strand=Plus/Minus
Query 11481 GGGGAGAGTCACCTGAATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAG 11540
||| || ||||| | | || || |||||||| || ||||| || || || |||| ||
Sbjct 60832 GGGCAGCGTCACATACACCTGGCGGTCGAAACGGCCGGGGCGCAGCAGCGCCGCATCCAG 60773
Query 11541 AATATCGACACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTC 11600
|| ||| |||||| || || || | ||| | | ||| | | ||||| |||||
Sbjct 60772 GATGTCGGGACGGTTGGTCGCAGCCACGACGATCACGCCGAGGTTGGTCTCGAAGCCGTC 60713
Query 11601 CATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTG-GAGGGCATACCA- 11658
||| || || | |||||| | ||||||||||||||||||||| | || |||
Sbjct 60712 CATCTCGACCAGCATCTGGTTCAGGGTCTGTTCACGCTCATCGTTGCCACCGC---CCAG 60656
Query 11659 -CCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTG 11717
||||| |||| || || ||||| || ||||||||||| | ||| || |||
Sbjct 60655 GCCTGCGCCGCGCTGGCGGCCCACGGCGTCGATTTCATCGATGAAGATGATGCAGGGTGC 60596
Query 11718 GTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACAT 11777
|| || | ||||| | || || || || ||| || || || ||||||||
Sbjct 60595 ATTCTTCTTGGCGTTCTCGAACATGTCGCGCACGCGGGCCGCGCCCACGCCGACGAACAT 60536
Query 11778 CTCAACGAAGTTTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGG 11836
|| ||||||| | | | || | ||||| ||| || || || | |||||||||||||
Sbjct 60535 TTCCACGAAGTCGGAGCCCGAGATGCTGAA-GAACGGGACCTTGGCTTCACCAGCGATGG 60477
Query 11837 -CTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACC 11873
|| | || || || ||||| || ||||| || | |||
Sbjct 60476 ACTTG-GCCAGCAGCGTCTTGCCGGTACCCGGAGGACC 60440
>seq7818
Length=8334
Score = 107 bits (118), Expect = 2e-18
Identities = 324/489 (66%), Gaps = 20/489 (4%)
Strand=Plus/Minus
Query 11499 CTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGT 11558
|| ||| |||||||| || || || || || || || || | ||| ||||| ||
Sbjct 7183 CTGACGGTCGAAACGGCCAGGACGCAGCAGGGCCGGGTCGAGCACGTCGGGCCGGTTGGT 7124
Query 11559 AGCGGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAGAAG 11615
||||| | | | ||||| ||| ||| ||||| |||||||| || || ||
Sbjct 7123 GGCGGCCACCAGGATGATGCC---CTCGTTGGCCTCGAAGCCGTCCATCTCGACCAGCAG 7067
Query 11616 CTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGG-GCATA--CCACCTGCCGAACGCTT 11672
|||| | | ||||| || ||||| |||||| | || | || | |||| || |
Sbjct 7066 CTGGGTCAGGGTCTGCTCGCGCTCGTCGTTGCCGCCGCCGAGGCCGGC-GCCG--CGATG 7010
Query 11673 CTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTG 11732
||||| ||||| || || |||||||| | ||| || || ||| |||||
Sbjct 7009 GCGGCCGACGGCGTCGATTTCGTCGATGAAGATGATGCAGGGGGCGTTCTTCTTGGCCTG 6950
Query 11733 TTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGC 11792
||||| | || ||||| || | || || || || ||||||||||| ||||||| |
Sbjct 6949 CTCGAACATGTCGCGTACGCGGCTGGCGCCGACGCCGACGAACATCTCGACGAAGTCCGA 6890
Query 11793 GGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851
| || | |||| ||| || || | ||| || |||||||| ||||| || || |
Sbjct 6889 ACCGGAGATGGTGAA-GAACGGCACGCCCGCCTCGCCGGCGATGGCGCGAGCCAGCAGGG 6831
Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTG--GCACCACT 11909
|||||||||| || || | || || || ||||| |||||||||| || | ||
Sbjct 6830 TCTTACCCGTGCCGGGCGGGCCGATCAGCAGCGCGCCCTTGGGGATCTTGCCGCCCAGCT 6771
Query 11910 TC-CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGG 11968
|| || | || | || | ||| ||||| || || ||||||| || || |||||||
Sbjct 6770 TCTGGAACTTGC---CCGGGTCCTTCAGGAAATCGACGATCTCCTGCAGCTCGTCCTTGG 6714
Query 11969 CGGAGTCGA 11977
| |||||
Sbjct 6713 CCTCGTCGA 6705
>seq4752
Length=355175
Score = 98.7 bits (108), Expect = 1e-15
Identities = 57/59 (97%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 143695 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACGGGTTCGATCCCCGT 143637
Score = 95.1 bits (104), Expect = 1e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 354830 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 354889
Query 136777 GGGAACAGCTTTTAGAT 136793
|| ||| || ||||
Sbjct 354890 CGGGCCAGGCTTAAGAT 354906
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 145410 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 145352
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 158300 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 158242
>seq4411
Length=2306675
Score = 98.7 bits (108), Expect = 1e-15
Identities = 57/59 (97%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 371588 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGAGCCCCGT 371530
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 350039 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 350097
>seq13197
Length=1288831
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 52609 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 52668
Query 136777 GGGAACAGCTTTT 136789
|| || |||||
Sbjct 52669 CGGGCCAACTTTT 52681
Score = 95.1 bits (104), Expect = 1e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 22455 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 22396
Query 136777 GGGAACAGCTTTTAGAT 136793
|| ||| || ||||
Sbjct 22395 CGGGCCAGGCTTAAGAT 22379
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 9711 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 9769
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 260402 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 260344
Score = 89.7 bits (98), Expect = 6e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||| ||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 6957 TAGCTCAGTCGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 6899
Score = 89.7 bits (98), Expect = 6e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||| ||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 8036 TAGCTCAGTCGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 7978
Score = 89.7 bits (98), Expect = 6e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
|||||||||| |||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 413951 TAGCTCAGTTTGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 414009
>seq11214
Length=5586833
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 285139 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 285197
>seq6811
Length=5282013
Score = 82.4 bits (90), Expect = 9e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||||| | ||| | ||| ||
Sbjct 2650576 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGATTCTATCCCTGTA 2650517
Query 136777 GGGAACAGCTTTT 136789
|| ||| ||||
Sbjct 2650516 CGGGTCAGATTTT 2650504
>seq608
Length=3558542
Score = 82.4 bits (90), Expect = 9e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 119515 CTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCT 119574
||||||| | |||||||||||| || |||||||||||||||||||||||||
Sbjct 2088602 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 2088543
Query 119575 TTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACA 119624
||||||| || || ||| |||| ||| || ||||| || || || |||
Sbjct 2088542 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACA 2088493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588865132630200
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