Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq711 89.7 6e-13 seq9751 84.2 3e-11 seq8995 84.2 3e-11 >seq711 Length=9888423 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 |||||||||||||||| || | ||||| || ||||| |||| ||| |||| | Sbjct 8388190 GCATCAATCTCATCAACAAACAAGATACAGGGAGCATTTTTCTGGGCCATTGCAAACATG 8388131 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 || ||||||| | ||| ||||||||||||||||||| || | | | ||| Sbjct 8388130 TCACGAACCCAAGCTGGGCCAACACCAACAAACATCTCCAGGAACTCAG-ACCCATTCAT 8388072 Query 9492 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 | ||||||||| ||| || || ||| | | || || ||||| ||||| || || Sbjct 8388071 GGTGATGAAGGGCACACGAGCCTCCCCCACGGTTGCCTTGGTTAGAAGCGTCTTGCCAGT 8388012 Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCA 9596 || || ||| | ||| ||||| |||| |||||| ||||| ||| Sbjct 8388011 ACTGGGAGAACCTGTGAGCAGGGCTCCCCTTGGAATTTTGGCCCCA 8387966 >seq9751 Length=51986 Score = 84.2 bits (92), Expect = 3e-11 Identities = 247/376 (66%), Gaps = 20/376 (5%) Strand=Plus/Minus Query 9191 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9250 ||| ||||| || || || || | | || | ||| | || |||| | || || || || Sbjct 9312 ACGGTCAAAACGGCCGGGGCGTAACAAAGCTTTATCCAAGACATCAGCACGGTTGGTTGC 9253 Query 9251 GGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9310 || || |||| | ||| | | ||||| || |||||||| ||| | |||||| Sbjct 9252 AGCAATCACAATCACACCGGAATTGGCCTCAAAGCCGTCCATCTCCACCAACATTTGGTT 9193 Query 9311 AATAGTTTGTTCCCGTTCATCATT-----CGCTGGCATACCACCAGCACTGCGTTGCTTT 9365 || ||||| || || || || || | | || |||| || ||| || | Sbjct 9192 AAGGGTTTGCTCACGCTCGTCGTTACCACCACCGG--TACCTGCACCACGGCTACGG--- 9138 Query 9366 CCCACGGCATCAATCTCATCAATGAAGACAATACATG----GTTGATTTTCGCGGGCGAT 9421 || || ||||||||||| ||||| |||| ||| || | ||| |||| |||| | Sbjct 9137 CCTACCGCATCAATCTCGTCAATAAAGATAATGCAAGGGGAGTTCTTTTTAGCGG----T 9082 Query 9422 TTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9481 |||||| | || || || | | || || ||||| |||||||| || || |||| | Sbjct 9081 TTCAAACATGTCACGCACACGTGCCGCACCTACACCGACAAACATTTCAACGAAGTCAGA 9022 Query 9482 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9540 ||||| || | | ||| || || || | |||||| |||||||| || || | | | Sbjct 9021 ACCGGAA-ATCGTAAAGAACGGCACTTTGGCTTCACCGGCAATGGCACGTGCTAACAAGG 8963 Query 9541 TCTTACCCGTACCTGG 9556 | ||||| || || || Sbjct 8962 TTTTACCTGTCCCCGG 8947 >seq8995 Length=8301158 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 116969 CATCA-TCCAATT-TCCCATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATC 117026 ||||| ||| ||| || ||| || || |||| ||||||||||||||| |||||||| || Sbjct 6968493 CATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTC 6968552 Query 117027 AAGGCTAATGTTTTCCATAAAGTCAAATGGATT 117059 || ||| ||||||||||||||||| ||||| Sbjct 6968553 CAGTGAAATATTTTCCATAAAGTCAAACGGATT 6968585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589869743489160