Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_015250.1
Length=159801
Score E
Sequences producing significant alignments: (Bits) Value
seq728 104 2e-17
seq15007 84.2 2e-11
seq7832 82.4 8e-11
>seq728
Length=7478
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 69740 TGGTGGGCCCAGCAGGACTCGAACCTGAAACCAACGGATTATGAGTCCGCTGCTCTGCCA 69799
||||||||||| ||||| |||||||||||||||| ||||||||||||| ||||||| |
Sbjct 6037 TGGTGGGCCCACCAGGATTCGAACCTGAAACCAAGGGATTATGAGTCCCCTGCTCTAACC 5978
Query 69800 ATTGAGCTATAGGCCCT 69816
||||||||||||||||
Sbjct 5977 GTTGAGCTATAGGCCCT 5961
>seq15007
Length=612
Score = 84.2 bits (92), Expect = 2e-11
Identities = 61/71 (86%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 69738 TCTGGTGGGCCCAGCAGGACTCGAACCTGAAACCAACGGATTATGAGTCCGCTGCTCTGC 69797
|||||| |||| || ||||||||||||| |||||||||||| ||||||||||||| |
Sbjct 326 TCTGGTAGGCCGTGCGGGACTCGAACCTGCGACCAACGGATTAAAAGTCCGCTGCTCTAC 267
Query 69798 CAATTGAGCTA 69808
||| |||||||
Sbjct 266 CAACTGAGCTA 256
>seq7832
Length=242706
Score = 82.4 bits (90), Expect = 8e-11
Identities = 68/82 (83%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 69737 ATCTGGTGGGCCCAGCAGGACTCGAACCTGAAACCAACGGATTATGAGTCCGCTGCTCT- 69795
|| |||||||||| | |||| |||| | |||||||||||||||||||||||||||
Sbjct 201207 ATTTGGTGGGCCCGCCCAGACTTGAACTGGGGACCAACGGATTATGAGTCCGCTGCTCTA 201266
Query 69796 GCCAATTGAGCTATAGGCCCTT 69817
|||| ||||||| ||||||||
Sbjct 201267 ACCAACTGAGCTACAGGCCCTT 201288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511138966364040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |