Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_015250.1 Length=159801 Score E Sequences producing significant alignments: (Bits) Value seq728 104 2e-17 seq15007 84.2 2e-11 seq7832 82.4 8e-11 >seq728 Length=7478 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 69740 TGGTGGGCCCAGCAGGACTCGAACCTGAAACCAACGGATTATGAGTCCGCTGCTCTGCCA 69799 ||||||||||| ||||| |||||||||||||||| ||||||||||||| ||||||| | Sbjct 6037 TGGTGGGCCCACCAGGATTCGAACCTGAAACCAAGGGATTATGAGTCCCCTGCTCTAACC 5978 Query 69800 ATTGAGCTATAGGCCCT 69816 |||||||||||||||| Sbjct 5977 GTTGAGCTATAGGCCCT 5961 >seq15007 Length=612 Score = 84.2 bits (92), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 69738 TCTGGTGGGCCCAGCAGGACTCGAACCTGAAACCAACGGATTATGAGTCCGCTGCTCTGC 69797 |||||| |||| || ||||||||||||| |||||||||||| ||||||||||||| | Sbjct 326 TCTGGTAGGCCGTGCGGGACTCGAACCTGCGACCAACGGATTAAAAGTCCGCTGCTCTAC 267 Query 69798 CAATTGAGCTA 69808 ||| ||||||| Sbjct 266 CAACTGAGCTA 256 >seq7832 Length=242706 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 69737 ATCTGGTGGGCCCAGCAGGACTCGAACCTGAAACCAACGGATTATGAGTCCGCTGCTCT- 69795 || |||||||||| | |||| |||| | ||||||||||||||||||||||||||| Sbjct 201207 ATTTGGTGGGCCCGCCCAGACTTGAACTGGGGACCAACGGATTATGAGTCCGCTGCTCTA 201266 Query 69796 GCCAATTGAGCTATAGGCCCTT 69817 |||| ||||||| |||||||| Sbjct 201267 ACCAACTGAGCTACAGGCCCTT 201288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511138966364040