Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_015273.1
Length=32317
Score E
Sequences producing significant alignments: (Bits) Value
seq7272 280 3e-71
>seq7272
Length=98981
Score = 280 bits (310), Expect = 3e-71
Identities = 399/556 (72%), Gaps = 14/556 (3%)
Strand=Plus/Plus
Query 12160 ACGCGCGCGGCGAAATCGGCGAGGTAACGGTCGGTGATGCGTTGGCGCAGCATCAGGTTT 12219
|||||| |||||| ||| ||| || |||||||||||||| ||||| | ||||| |
Sbjct 24768 ACGCGCATGGCGAAGTCGCCGAAATAGCGGTCGGTGATGCGCTGGCGGAATCCCAGGTCT 24827
Query 12220 TCGATCGGCGGAACGGGCGTGTAGTCGTAATCGATCGCCAGCTTGCCGGCCTTGAGCGAT 12279
|| | |||||| ||||||||||||||||| || | | ||||||||||||||||||||| |
Sbjct 24828 TCCAGCGGCGGCACGGGCGTGTAGTCGTAGTCAAGCACCAGCTTGCCGGCCTTGAGCGCT 24887
Query 12280 TCGACGGGGTTCGCGCTGTCGTCGTACCAAGCCGAGCCGCCGAGCAGATAGCCGTTTGCG 12339
|| || ||| | | |||| |||| || |||| |||| | ||||| ||
Sbjct 24888 TCTGTGGTGTTGACCTCGGCGTCAAACCAGGCGCGGCCGTCGAGGATGTAGCCCAGGGCC 24947
Query 12340 ATCAGCTCGCGGAATTTCGCGTTGATGCTTTCGATCATGTCTTTCACGATCGACGGGTGC 12399
| || |||||||| || || ||||||| ||| | ||||||||||| || ||||||
Sbjct 24948 TTGAGTTCGCGGAACTTGGCATTGATGCCTTCCACGATGTCTTTCACCATGCTGGGGTGC 25007
Query 12400 ATCGGCTTGTCGACATAAACCATGTGTGCTTCCGCCATCGTGTCGGCGAGCACTTGCGCG 12459
|| |||||||||||| | | | || | || ||||| |||||||| ||||| || ||
Sbjct 25008 ATGGGCTTGTCGACAAAGGCGAAATGACCCTCTGCCATGGTGTCGGCCAGCACCTGGGCA 25067
Query 12460 GTGCGCGTGTAGTTCTCGAATGCGAACAGCGGATCATCCG---AGCAGGTGCGCGAACCC 12516
|||||| | | ||||||| ||||| | || || | |||||||||||| |||
Sbjct 25068 GTGCGCACGCTGGACTCGAATCGGAACA---GTTCGTCGGTGCTGCAGGTGCGCGATCCC 25124
Query 12517 CAGAAGCGATAGCCCGTCGAGTTGATGAGCGTCGTCACATCGTTCTCGTTGAGGTAGCCG 12576
||||||||||||||| ||||||||||||| || || | | ||| ||||| |
Sbjct 25125 CAGAAGCGATAGCCCTGGTAGTTGATGAGCGTGGTGACGTTGCCCTCATTGAGCAGGTTT 25184
Query 12577 GCATCGGTCGCGGGGTCTTGCAAGTCCCAGAAA---ACATCCTTGCTGATACCCGTAACG 12633
|| || ||| | | | ||||| ||| |||| || ||||||||||| ||| |
Sbjct 25185 GCGTCCGTCTCCGAGCTTTGCAGGTC---GAAATGCACGTCCTTGCTGATGCCCACCGGG 25241
Query 12634 CCATTGATGCCG-ACATTCGAAATCGTCTTGTGCCAGCCCGTTTCCTCGTCGATCTTGGC 12692
||||| | || | || || || | ||||||||||| || ||| ||||||| |||
Sbjct 25242 CCATTTA-GCGGCACGTTTGACAGGGTCTTGTGCCAACCTTGCTCCACGTCGATGCGGGC 25300
Query 12693 GCGCAAGCCGAGCGCG 12708
||||| || | ||||
Sbjct 25301 GCGCAGCCCCATCGCG 25316
Score = 251 bits (278), Expect = 1e-62
Identities = 929/1436 (65%), Gaps = 38/1436 (3%)
Strand=Plus/Plus
Query 24789 GCGCGCGCGCTCTACTGGCAGGGTTGGCGCATCACGTCCGTCGCCGAGCACTTGCAGCTC 24848
|| || ||||| || ||| ||| ||||||||||| ||||||||||| || |
Sbjct 40663 GCTCGGGCGCTGTATTGGATGGGGTGGCGCATCACCCATATCGCCGAGCACCTGGGCATT 40722
Query 24849 AAACGCGCGACCGTCGAGGCATGGAAACAGCGCGACGAGTGGGACAAGGCCGCCCCGATC 24908
||| | || | | | |||||| || ||| | ||||| |||| || |
Sbjct 40723 GCACGTACCACGCTGCACGACTGGAAAAAGGCCGATGGATGGGATGCGGCCAAGCCCGTG 40782
Query 24909 GAGCGCATCGAGTCGTCGCTTGAAACGCGCCTCGCGGTGCTCATTGCCAAGCCGGTAAAG 24968
||||| ||||| ||||| |||| |||||| |||||| |||| || |||
Sbjct 40783 GAGCGTGTCGAGGGATCGCTGGAAATGCGCCTGTGCACGCTCATCAACAAGGAGGGCAAG 40842
Query 24969 ACGGGCA---GCGACTTCAAGGAAATCGACTTGCTCGGCCGTCAGGTCGAGCGGCTTGCA 25025
|||| |||||| ||||||||||||| ||| || ||| | ||||| | ||
Sbjct 40843 ---GGCAACGGCGACTACAAGGAAATCGACGCGCTGGGGCGTGCCATGGAGCGCTTGGCG 40899
Query 25026 CGCGTGCGCAAGTACG-GCGAAACGGGGAAAGAGAGCGACTTAAACCCGAACATCGAGGC 25084
||||||| ||| |||| ||| | |||| ||| || | || |||| ||| ||
Sbjct 40900 CGCGTGCACAAATACGAGCGCA-CGGGCCGAGAATCGGATCTGAATCCGACCATTGAAAA 40958
Query 25085 GCGCAACAAAGCGCCCCGTAAAGAAAAGGCCGCCCGCAACGATTTCAGCGACGAGCAGAT 25144
|||||| | || ||| | || ||| ||||| | |||| |||| | |
Sbjct 40959 GCGCAATGCCGGACC---TAAGAAGCAGCCCGAGCGCAATCACTTCACGTCCGAGGACGT 41015
Query 25145 CG-CACGGCTTCACGAGGCCTTTCTTGATTGCCAGTTCGGTTATCAAAAGGTGTGGTATC 25203
| || | |||| ||| ||||| |||| | ||| || ||||| ||||
Sbjct 41016 GGACAAGATCACACG-GGCATTTCTGGATTCGCTTTTCAACTACCAAAACACATGGTG-- 41072
Query 25204 GAAACGG--CCATCAGCGCACGCGCAACATTCTCAAGTCGCGGCAGATCGGCGCGACGTT 25261
| | | | ||| |||||||||||| ||||||||| ||||| |||||||| || ||||
Sbjct 41073 GGAGCAGATCCAGCAGCGCACGCGCGCCATTCTCAAATCGCGCCAGATCGGGGCAACGTG 41132
Query 25262 CTATTTCGCACGCGAGGCGCTAGACGATGCCTTGCAGACTGCACGCAATCAGATTTTTCT 25321
|| |||| |||||||| || |||||| || |||| | |||||||||||||||||
Sbjct 41133 GTACTTCGGCCGCGAGGCCCTGATTGATGCCCTGAAGACGGGCCGCAATCAGATTTTTCT 41192
Query 25322 ATCGGCCAGCAAGGCGCAGGCGCACGTTTTCAAGTCGTACAT--TCGGCAGTTTGCCGCC 25379
||||||||| |||||||| || |||||| | |||||| ||| |||||||
Sbjct 41193 TTCGGCCAGCCGTGCGCAGGCCCATGTTTTCCGGCAGTACATCATCG--CGTTTGCCAAG 41250
Query 25380 GAGGCCGCCGAGGTCGAATTGACCGGCGACCCGATCATTTTGCCGAACATGGCAGAGTTG 25439
||| ||| |||| |||| |||||||| ||| | || || || | ||
Sbjct 41251 GAGCATTGCGATATCGATTTGAAGGGCGACCCCATCGTCCTGAGCAATGGCGCCACGCTG 41310
Query 25440 ATTTTCCTCGGCACGAATTCGCGAACGGCGCAGAGCTATCACGGCAATTTCTATTTCGAC 25499
|||||| ||||||| | || || |||||| || ||||||||| ||||||||||
Sbjct 41311 TATTTCCTGGGCACGAGCGCCCGCACCGCGCAGTCGTACCACGGCAATCTCTATTTCGAT 41370
Query 25500 GAGTATTTTTGGGTGAGCGGGTTTCGCCAGCTCAACAAGGTTGCATCGGGCATGGCGATG 25559
|| | |||||||| | | || |||| ||||| || || ||||| ||
Sbjct 41371 GAATTCTTTTGGGTCAACAACTTCACGGAGCTGTGGAAGGTGGCCAGCGGTATGGCCATC 41430
Query 25560 CACAAGAAATGGCGAAAGACGTATTTTTCAACGCCGTCGAGCATCACGCACGAGGCTTAC 25619
|||||| | ||||| |||||| ||||| ||||| ||| | |||| |||| ||
Sbjct 41431 CACAAGCATTGGCGCAAGACGCTGTTTTCCACGCCCAGCAGCCTGCAGCACCAGGCCTAT 41490
Query 25620 ACCTTCTGGAGTGGCGAGCACTACAACAGGGGCCGCGCAAAGGCCGATCACATTCATCTC 25679
| | ||||| | ||| | | ||||| | ||||| || || | ||| | ||
Sbjct 41491 GCGCTGTGGAGCGCCGAACGCATCAACAAGAAGCGCGCCAAAAAGGACCGCATAGAGCTG 41550
Query 25680 GATATTTCGCACTCGGCGCTCGCTCGCGGCCGGCTCTGCGAGGATCGACA-GTTTCGCCA 25738
|| | || ||| || ||| | ||| | ||||||| | | | | || ||
Sbjct 41551 GACCTGAGCCATTCGCACCTGGCTGGAGGCTTCACCGGCGAGGA-CAAGATATGGCGGCA 41609
Query 25739 GATCGTGACGGTCGAGGATGC-CGTCGCCGGCGGTTGCGACTTGTTCGATATCGACGAGC 25797
||| || ||||| |||||| | || |||||| ||| | ||||||| | ||||| |
Sbjct 41610 GATTGTCACGGTGCTGGATGCGCAGCG-CGGCGGCTGCAATCTGTTCGACCTTGACGAAC 41668
Query 25798 TGCGCCTTGAATACAGCGCGCAGGAATACGCGAATCTGTTGATGTGTCAGTTTATCGACG 25857
||||| | || || | |||||| | || ||| | ||||| |||| |||| |
Sbjct 41669 TGCGCTTCGAGTATTCGGACGAGGAATGGGACAACCTGCTCATGTGCGGGTTTGTCGATG 41728
Query 25858 ATACCGCGTCGATCTTT--CCGCTCGCCGAGCTGCAACGCTGCATGGTCGACTCGTGGGA 25915
| || | ||| | ||| ||||| || |||| |||||| | ||| |||||
Sbjct 41729 ACAC--CTTCGCTGTTTTCCCGCTGTCCACGCTGATGCGCTGCCATGCGGACAGCTGGGA 41786
Query 25916 AGAATGGGCCGACGATTTCAAGCCGCTCGCGCCCCGCCCTTTCGGGTTCCGGCCGGTATG 25975
| ||| |||||||||||| || || || || || || ||| || ||
Sbjct 41787 TGCGTGG---AGCGATTTCAAGCCCTTCACGTTGCGGCCGTTTGGCCAAAAGCCCGTCTG 41843
Query 25976 GGTTGGCTACGA-TCCAGCGCTTTCCGGCGACTCGGCCGGCCTTGTCNNNNNNNNNNNNN 26034
| ||||||| || ||||| | | | ||||||||||| ||||||||
Sbjct 41844 GATTGGCTATGACCCCAGC-CATACGGGCGACTCGGCGGGCCTTGTAGTGCTGGCCCCGC 41902
Query 26035 NNNNNNTGCCGGGGGGCAAGTTCCGCGTATTGCA-CAAGTGCCAATTTCGCGGCA-TGGA 26092
|||||| |||||||||||| | || | | ||| | ||| || | |||
Sbjct 41903 CAGAAAAGCCGGGCGGCAAGTTCCGCATGCTGGAGCGCATGC--AGTTCAAGGGAGCGGA 41960
Query 26093 TTTCGAGGGGCAAGCCGAGGCGATTCGACAGATCACTCAGCAATACAACGTCGAATATAT 26152
|| || | ||| ||||| | || || ||||| || || |||||||||| | | | ||
Sbjct 41961 CTTTGAAGCGCAGGCCGAAGTCATCCGCCAGATGACAGAGAAATACAACGTGGCACACAT 42020
Query 26153 GTCGATCGATACGACGGGCATCGGCCAGGGTGTTTATCAGCTCGTCAAACAGTTCT 26208
| || ||| | || || | |||||||| || ||| |||| ||| ||||||
Sbjct 42021 CTGCATTGATTCCACAGGTCTGGGCCAGGGCGTCCTGCAGATCGTGAAAAAGTTCT 42076
Score = 165 bits (182), Expect = 2e-36
Identities = 321/469 (68%), Gaps = 9/469 (2%)
Strand=Plus/Plus
Query 27042 TGCCCGAATATCTCGGCGCGCTGCACTCGGCATGGTTGAACGAGTCGGCGACGCTCTTTC 27101
|||| | || || | ||||||||| || || ||| | || |||||||| ||||| ||||
Sbjct 42889 TGCCGCAGTACCTGGCCGCGCTGCAGTCCGCCTGGCTCAATGAGTCGGCCACGCTGTTTC 42948
Query 27102 GTCGCAAGTATTACGAGAATGGATCGCACGCCGGTTTCATCCTGTACATGACCGATGCGG 27161
| ||| ||||||| | ||||| || ||||| | |||||| || ||| |||| |
Sbjct 42949 GGCGCCGGTATTACAACAATGGGAGCCATGCCGGATACATCCTCTATCTGAGCGATCC-- 43006
Query 27162 CGCAAAGTCAAAG--CGATGTCGACAAGATGCGCGAGGCGTTGAAGAACAGCAAGGGGCC 27219
|| | | |||| |||||| || | ||||| |||| ||||| ||||||
Sbjct 43007 CGAAGTGGCAAAAGACGATGTGGATGCGCTGCGCCAGGCCTTGAAATCTTCCAAGGGCAT 43066
Query 27220 GGGGAATTTCCGAAACCTTTTCATGTACGCGCCGAACGGCAAGAAAGACGGCATCCAGCT 27279
||| |||||||| || || || | | |||| |||||| | | | |||||| ||
Sbjct 43067 GGGCAATTTCCGCAATCTGTTTTTCCATTCGCCCGGCGGCAAAGAGAAAGCCATCCAACT 43126
Query 27280 CATTCCGGTTTCCGAGGTCACGGCGAAAGACGAGTTCTTCAACATCAAGAATGTCACGCG 27339
| || | ||||| |||| || || || || |||||||||||||| || | ||
Sbjct 43127 GCTGCCCATCGGCGAGGCGGCGGCCAAGGATGAATTTTTCAACATCAAGAACGTGAGCCG 43186
Query 27340 CGACGACTTGCTCGCGGCGCATCGCATCCCGCCTCAGCTCATGGGGATCGTGCCGAGCAA 27399
||| ||| | || || || ||| | || || ||||||||||| | |||||| |||
Sbjct 43187 CGATGACCAATTGGCCGCCCACCGCGTGCCTCCGCAGCTCATGGGCGTGGTGCCGGCCAA 43246
Query 27400 TACCGGCGGATTCGGCGCAACGGACAAGGCCGCCGAGGTGTTCG-GCGTGAATGAAATCG 27458
| | || || ||||||| || ||| || || |||||||| ||| || ||||||
Sbjct 43247 TGCAGGTGGCTTCGGCGATGTGGTCAACGCTGCACGGGTGTTCGCGCG-CAACGAAATCC 43305
Query 27459 CGCCCCTGCAACGGCGCTTTGAACAG---CTCAACGAGTGGATCGGCGA 27504
||||||||| |||||| | ||| |||| || ||||| || ||
Sbjct 43306 AGCCCCTGCAGACGCGCTTCGCGCAGGCCATCAATGAATGGATGGGGGA 43354
Score = 159 bits (176), Expect = 7e-35
Identities = 486/738 (66%), Gaps = 16/738 (2%)
Strand=Plus/Plus
Query 22679 GAAGAAAGGCACGGTCACGGCCGGCAGGTTGCCGATGCGCTTCTGGCTCTGGATCACGTC 22738
|||||||||||||||||||||| | | ||| | |||| |||||||| | || |||
Sbjct 38663 GAAGAAAGGCACGGTCACGGCCTGGCTGCCGCCCAGGCGCATCTGGCTCACCACCATGTC 38722
Query 22739 AGCGGCCATCATTTCGGTCGGCGCTTGGGCCTTGTTGACGAGCGGGAAATACTTGTCGTG 22798
|| |||| ||| | ||| | | ||||| |||| ||||| |||||| ||
Sbjct 38723 GGCCGCCAGGCGCTCGCTGGGCAGATCGTTGTTGTTCACGATGGGGAACAGCTTGTCATG 38782
Query 22799 CAACAGGCCGCGACCGCACATCACGACGAGAGCCGTGTCGTCTTGGTGCCACGGGTCGAT 22858
|| |||| | | ||| || || ||| ||| || | ||||||||| || ||
Sbjct 38783 CATCAGGTCATCGCTGCAGATGGCGCGCAGATCCGGGTGCTTGCGGTGCCACGAATCAAT 38842
Query 22859 CATGCTCGCGACCAG-ATCGGCGACGAGCGCATCGAGGTTCGCGTAATCGCCGGCCGCGC 22917
|| || | | | ||| | | || || ||||||||| ||| ||||| ||| |
Sbjct 38843 CA-GCGAGTGCTTGGCATCCATGGCCAGGGCGTCGAGGTTCTTGTAGTCGCCACCCGGTC 38901
Query 22918 CGACGACGATCTTGCCGGCCGTCTTCGCGCCTTCGTCCATCACGCGTTGCGGGGCTTGGT 22977
| || || |||||| ||| ||| ||| ||| ||||| | || || | |
Sbjct 38902 CCACAGTGACCTTGCCCGCCACCTT---GCCAGAAGACATGACGCGCTCGGGCGCCTCTT 38958
Query 22978 CGCGCATGCGTTGCAACCAGCCCTTATTGACGTCCTGCAACAGCGGGTTAGCTGCACGGT 23037
|||||| ||| |||| ||| ||||| | | ||||||| || ||||| || | ||
Sbjct 38959 CGCGCAGGCGCTGCAGCCACCCCTTGGTCAGATCCTGCAGCAAAGGGTTGGCGGTCAAGT 39018
Query 23038 CGGACGTTGCCGCACGCGAAC-GGCCGTTGAAACCGATCGCGATGCGGTCGAGCGCTTGA 23096
|| || ||| || | |||||| | || | | ||||||||| ||||| |
Sbjct 39019 TGGTGGTGGCC-TTGGCTTCCTTGCCGTTCCATCCCACCATGATGCGGTCCAGCGCATTG 39077
Query 23097 CGGCGCACGATCACGTCGCGAATGCGGGTCTGGAAGTCGGGAAACTTCGCCCACGCGTCG 23156
|| | |||| ||||| || || ||| |||||||| || | |||||| || |||
Sbjct 39078 CGTTCGGCAATCAGGTCGCTGATACGCACCTGAAAGTCGGGGAAGTGCGCCCAGGCATCG 39137
Query 23157 AGCAGCGCATACGTGATGTGCGAGTCGAAATTCGTTTGCGTGCAGTTGTAACCGTTCTCG 23216
|||| ||| ||| ||||||| | ||| ||| | ||| ||||| ||| ||| ||| |
Sbjct 39138 AGCATCGCGTACTTGATGTGGGTATCGGAATCAATCTGCAGGCAGTGGTATCCGGTCTTG 39197
Query 23217 TCGAGGTCGGTCACATC--AGCCGTTGCGCGATCCTTCTGC-GTCGTGTCGGTCGTGCTC 23273
|| | | ||| ||| | ||||| | || || || || ||||| || |||
Sbjct 39198 TCCTTGCCTGTCGGATCTTTGGTCTTGCGGGGGCCGTCAGCGGTGGTGTCCGTGCGGCTG 39257
Query 23274 GCGATCGG-CGAGCCGACGCCGAGGCCGAGCTTTGCGCCTTCCTTGTCGG--TCACGCCG 23330
|||| || || | | | || || || | |||| |||| | || ||| ||||
Sbjct 39258 GCGACGGGACGGGTC-AGGCTCAGACCCACCTTTTCGCCCTGCT--GCGGCACCACGGGC 39314
Query 23331 ATAACGTTGATGCGTTTCAGAAAGTCGCTCGATTCCTGAATGCGGGTTTCGAGCTTTTGT 23390
| | ||||||| ||||| || ||||||||||| ||||||||||| ||||| ||
Sbjct 39315 AGGATGTTGATGGACTTCAGGAATGAACTCGATTCCTGCATGCGGGTTTCCAGCTTCTGC 39374
Query 23391 TGCACGCTCGGCGACACG 23408
|||||| ||||||| |||
Sbjct 39375 TGCACGGTCGGCGAGACG 39392
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 103274328600482
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