Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq7272 280 3e-71 >seq7272 Length=98981 Score = 280 bits (310), Expect = 3e-71 Identities = 399/556 (72%), Gaps = 14/556 (3%) Strand=Plus/Plus Query 12160 ACGCGCGCGGCGAAATCGGCGAGGTAACGGTCGGTGATGCGTTGGCGCAGCATCAGGTTT 12219 |||||| |||||| ||| ||| || |||||||||||||| ||||| | ||||| | Sbjct 24768 ACGCGCATGGCGAAGTCGCCGAAATAGCGGTCGGTGATGCGCTGGCGGAATCCCAGGTCT 24827 Query 12220 TCGATCGGCGGAACGGGCGTGTAGTCGTAATCGATCGCCAGCTTGCCGGCCTTGAGCGAT 12279 || | |||||| ||||||||||||||||| || | | ||||||||||||||||||||| | Sbjct 24828 TCCAGCGGCGGCACGGGCGTGTAGTCGTAGTCAAGCACCAGCTTGCCGGCCTTGAGCGCT 24887 Query 12280 TCGACGGGGTTCGCGCTGTCGTCGTACCAAGCCGAGCCGCCGAGCAGATAGCCGTTTGCG 12339 || || ||| | | |||| |||| || |||| |||| | ||||| || Sbjct 24888 TCTGTGGTGTTGACCTCGGCGTCAAACCAGGCGCGGCCGTCGAGGATGTAGCCCAGGGCC 24947 Query 12340 ATCAGCTCGCGGAATTTCGCGTTGATGCTTTCGATCATGTCTTTCACGATCGACGGGTGC 12399 | || |||||||| || || ||||||| ||| | ||||||||||| || |||||| Sbjct 24948 TTGAGTTCGCGGAACTTGGCATTGATGCCTTCCACGATGTCTTTCACCATGCTGGGGTGC 25007 Query 12400 ATCGGCTTGTCGACATAAACCATGTGTGCTTCCGCCATCGTGTCGGCGAGCACTTGCGCG 12459 || |||||||||||| | | | || | || ||||| |||||||| ||||| || || Sbjct 25008 ATGGGCTTGTCGACAAAGGCGAAATGACCCTCTGCCATGGTGTCGGCCAGCACCTGGGCA 25067 Query 12460 GTGCGCGTGTAGTTCTCGAATGCGAACAGCGGATCATCCG---AGCAGGTGCGCGAACCC 12516 |||||| | | ||||||| ||||| | || || | |||||||||||| ||| Sbjct 25068 GTGCGCACGCTGGACTCGAATCGGAACA---GTTCGTCGGTGCTGCAGGTGCGCGATCCC 25124 Query 12517 CAGAAGCGATAGCCCGTCGAGTTGATGAGCGTCGTCACATCGTTCTCGTTGAGGTAGCCG 12576 ||||||||||||||| ||||||||||||| || || | | ||| ||||| | Sbjct 25125 CAGAAGCGATAGCCCTGGTAGTTGATGAGCGTGGTGACGTTGCCCTCATTGAGCAGGTTT 25184 Query 12577 GCATCGGTCGCGGGGTCTTGCAAGTCCCAGAAA---ACATCCTTGCTGATACCCGTAACG 12633 || || ||| | | | ||||| ||| |||| || ||||||||||| ||| | Sbjct 25185 GCGTCCGTCTCCGAGCTTTGCAGGTC---GAAATGCACGTCCTTGCTGATGCCCACCGGG 25241 Query 12634 CCATTGATGCCG-ACATTCGAAATCGTCTTGTGCCAGCCCGTTTCCTCGTCGATCTTGGC 12692 ||||| | || | || || || | ||||||||||| || ||| ||||||| ||| Sbjct 25242 CCATTTA-GCGGCACGTTTGACAGGGTCTTGTGCCAACCTTGCTCCACGTCGATGCGGGC 25300 Query 12693 GCGCAAGCCGAGCGCG 12708 ||||| || | |||| Sbjct 25301 GCGCAGCCCCATCGCG 25316 Score = 251 bits (278), Expect = 1e-62 Identities = 929/1436 (65%), Gaps = 38/1436 (3%) Strand=Plus/Plus Query 24789 GCGCGCGCGCTCTACTGGCAGGGTTGGCGCATCACGTCCGTCGCCGAGCACTTGCAGCTC 24848 || || ||||| || ||| ||| ||||||||||| ||||||||||| || | Sbjct 40663 GCTCGGGCGCTGTATTGGATGGGGTGGCGCATCACCCATATCGCCGAGCACCTGGGCATT 40722 Query 24849 AAACGCGCGACCGTCGAGGCATGGAAACAGCGCGACGAGTGGGACAAGGCCGCCCCGATC 24908 ||| | || | | | |||||| || ||| | ||||| |||| || | Sbjct 40723 GCACGTACCACGCTGCACGACTGGAAAAAGGCCGATGGATGGGATGCGGCCAAGCCCGTG 40782 Query 24909 GAGCGCATCGAGTCGTCGCTTGAAACGCGCCTCGCGGTGCTCATTGCCAAGCCGGTAAAG 24968 ||||| ||||| ||||| |||| |||||| |||||| |||| || ||| Sbjct 40783 GAGCGTGTCGAGGGATCGCTGGAAATGCGCCTGTGCACGCTCATCAACAAGGAGGGCAAG 40842 Query 24969 ACGGGCA---GCGACTTCAAGGAAATCGACTTGCTCGGCCGTCAGGTCGAGCGGCTTGCA 25025 |||| |||||| ||||||||||||| ||| || ||| | ||||| | || Sbjct 40843 ---GGCAACGGCGACTACAAGGAAATCGACGCGCTGGGGCGTGCCATGGAGCGCTTGGCG 40899 Query 25026 CGCGTGCGCAAGTACG-GCGAAACGGGGAAAGAGAGCGACTTAAACCCGAACATCGAGGC 25084 ||||||| ||| |||| ||| | |||| ||| || | || |||| ||| || Sbjct 40900 CGCGTGCACAAATACGAGCGCA-CGGGCCGAGAATCGGATCTGAATCCGACCATTGAAAA 40958 Query 25085 GCGCAACAAAGCGCCCCGTAAAGAAAAGGCCGCCCGCAACGATTTCAGCGACGAGCAGAT 25144 |||||| | || ||| | || ||| ||||| | |||| |||| | | Sbjct 40959 GCGCAATGCCGGACC---TAAGAAGCAGCCCGAGCGCAATCACTTCACGTCCGAGGACGT 41015 Query 25145 CG-CACGGCTTCACGAGGCCTTTCTTGATTGCCAGTTCGGTTATCAAAAGGTGTGGTATC 25203 | || | |||| ||| ||||| |||| | ||| || ||||| |||| Sbjct 41016 GGACAAGATCACACG-GGCATTTCTGGATTCGCTTTTCAACTACCAAAACACATGGTG-- 41072 Query 25204 GAAACGG--CCATCAGCGCACGCGCAACATTCTCAAGTCGCGGCAGATCGGCGCGACGTT 25261 | | | | ||| |||||||||||| ||||||||| ||||| |||||||| || |||| Sbjct 41073 GGAGCAGATCCAGCAGCGCACGCGCGCCATTCTCAAATCGCGCCAGATCGGGGCAACGTG 41132 Query 25262 CTATTTCGCACGCGAGGCGCTAGACGATGCCTTGCAGACTGCACGCAATCAGATTTTTCT 25321 || |||| |||||||| || |||||| || |||| | ||||||||||||||||| Sbjct 41133 GTACTTCGGCCGCGAGGCCCTGATTGATGCCCTGAAGACGGGCCGCAATCAGATTTTTCT 41192 Query 25322 ATCGGCCAGCAAGGCGCAGGCGCACGTTTTCAAGTCGTACAT--TCGGCAGTTTGCCGCC 25379 ||||||||| |||||||| || |||||| | |||||| ||| ||||||| Sbjct 41193 TTCGGCCAGCCGTGCGCAGGCCCATGTTTTCCGGCAGTACATCATCG--CGTTTGCCAAG 41250 Query 25380 GAGGCCGCCGAGGTCGAATTGACCGGCGACCCGATCATTTTGCCGAACATGGCAGAGTTG 25439 ||| ||| |||| |||| |||||||| ||| | || || || | || Sbjct 41251 GAGCATTGCGATATCGATTTGAAGGGCGACCCCATCGTCCTGAGCAATGGCGCCACGCTG 41310 Query 25440 ATTTTCCTCGGCACGAATTCGCGAACGGCGCAGAGCTATCACGGCAATTTCTATTTCGAC 25499 |||||| ||||||| | || || |||||| || ||||||||| |||||||||| Sbjct 41311 TATTTCCTGGGCACGAGCGCCCGCACCGCGCAGTCGTACCACGGCAATCTCTATTTCGAT 41370 Query 25500 GAGTATTTTTGGGTGAGCGGGTTTCGCCAGCTCAACAAGGTTGCATCGGGCATGGCGATG 25559 || | |||||||| | | || |||| ||||| || || ||||| || Sbjct 41371 GAATTCTTTTGGGTCAACAACTTCACGGAGCTGTGGAAGGTGGCCAGCGGTATGGCCATC 41430 Query 25560 CACAAGAAATGGCGAAAGACGTATTTTTCAACGCCGTCGAGCATCACGCACGAGGCTTAC 25619 |||||| | ||||| |||||| ||||| ||||| ||| | |||| |||| || Sbjct 41431 CACAAGCATTGGCGCAAGACGCTGTTTTCCACGCCCAGCAGCCTGCAGCACCAGGCCTAT 41490 Query 25620 ACCTTCTGGAGTGGCGAGCACTACAACAGGGGCCGCGCAAAGGCCGATCACATTCATCTC 25679 | | ||||| | ||| | | ||||| | ||||| || || | ||| | || Sbjct 41491 GCGCTGTGGAGCGCCGAACGCATCAACAAGAAGCGCGCCAAAAAGGACCGCATAGAGCTG 41550 Query 25680 GATATTTCGCACTCGGCGCTCGCTCGCGGCCGGCTCTGCGAGGATCGACA-GTTTCGCCA 25738 || | || ||| || ||| | ||| | ||||||| | | | | || || Sbjct 41551 GACCTGAGCCATTCGCACCTGGCTGGAGGCTTCACCGGCGAGGA-CAAGATATGGCGGCA 41609 Query 25739 GATCGTGACGGTCGAGGATGC-CGTCGCCGGCGGTTGCGACTTGTTCGATATCGACGAGC 25797 ||| || ||||| |||||| | || |||||| ||| | ||||||| | ||||| | Sbjct 41610 GATTGTCACGGTGCTGGATGCGCAGCG-CGGCGGCTGCAATCTGTTCGACCTTGACGAAC 41668 Query 25798 TGCGCCTTGAATACAGCGCGCAGGAATACGCGAATCTGTTGATGTGTCAGTTTATCGACG 25857 ||||| | || || | |||||| | || ||| | ||||| |||| |||| | Sbjct 41669 TGCGCTTCGAGTATTCGGACGAGGAATGGGACAACCTGCTCATGTGCGGGTTTGTCGATG 41728 Query 25858 ATACCGCGTCGATCTTT--CCGCTCGCCGAGCTGCAACGCTGCATGGTCGACTCGTGGGA 25915 | || | ||| | ||| ||||| || |||| |||||| | ||| ||||| Sbjct 41729 ACAC--CTTCGCTGTTTTCCCGCTGTCCACGCTGATGCGCTGCCATGCGGACAGCTGGGA 41786 Query 25916 AGAATGGGCCGACGATTTCAAGCCGCTCGCGCCCCGCCCTTTCGGGTTCCGGCCGGTATG 25975 | ||| |||||||||||| || || || || || || ||| || || Sbjct 41787 TGCGTGG---AGCGATTTCAAGCCCTTCACGTTGCGGCCGTTTGGCCAAAAGCCCGTCTG 41843 Query 25976 GGTTGGCTACGA-TCCAGCGCTTTCCGGCGACTCGGCCGGCCTTGTCNNNNNNNNNNNNN 26034 | ||||||| || ||||| | | | ||||||||||| |||||||| Sbjct 41844 GATTGGCTATGACCCCAGC-CATACGGGCGACTCGGCGGGCCTTGTAGTGCTGGCCCCGC 41902 Query 26035 NNNNNNTGCCGGGGGGCAAGTTCCGCGTATTGCA-CAAGTGCCAATTTCGCGGCA-TGGA 26092 |||||| |||||||||||| | || | | ||| | ||| || | ||| Sbjct 41903 CAGAAAAGCCGGGCGGCAAGTTCCGCATGCTGGAGCGCATGC--AGTTCAAGGGAGCGGA 41960 Query 26093 TTTCGAGGGGCAAGCCGAGGCGATTCGACAGATCACTCAGCAATACAACGTCGAATATAT 26152 || || | ||| ||||| | || || ||||| || || |||||||||| | | | || Sbjct 41961 CTTTGAAGCGCAGGCCGAAGTCATCCGCCAGATGACAGAGAAATACAACGTGGCACACAT 42020 Query 26153 GTCGATCGATACGACGGGCATCGGCCAGGGTGTTTATCAGCTCGTCAAACAGTTCT 26208 | || ||| | || || | |||||||| || ||| |||| ||| |||||| Sbjct 42021 CTGCATTGATTCCACAGGTCTGGGCCAGGGCGTCCTGCAGATCGTGAAAAAGTTCT 42076 Score = 165 bits (182), Expect = 2e-36 Identities = 321/469 (68%), Gaps = 9/469 (2%) Strand=Plus/Plus Query 27042 TGCCCGAATATCTCGGCGCGCTGCACTCGGCATGGTTGAACGAGTCGGCGACGCTCTTTC 27101 |||| | || || | ||||||||| || || ||| | || |||||||| ||||| |||| Sbjct 42889 TGCCGCAGTACCTGGCCGCGCTGCAGTCCGCCTGGCTCAATGAGTCGGCCACGCTGTTTC 42948 Query 27102 GTCGCAAGTATTACGAGAATGGATCGCACGCCGGTTTCATCCTGTACATGACCGATGCGG 27161 | ||| ||||||| | ||||| || ||||| | |||||| || ||| |||| | Sbjct 42949 GGCGCCGGTATTACAACAATGGGAGCCATGCCGGATACATCCTCTATCTGAGCGATCC-- 43006 Query 27162 CGCAAAGTCAAAG--CGATGTCGACAAGATGCGCGAGGCGTTGAAGAACAGCAAGGGGCC 27219 || | | |||| |||||| || | ||||| |||| ||||| |||||| Sbjct 43007 CGAAGTGGCAAAAGACGATGTGGATGCGCTGCGCCAGGCCTTGAAATCTTCCAAGGGCAT 43066 Query 27220 GGGGAATTTCCGAAACCTTTTCATGTACGCGCCGAACGGCAAGAAAGACGGCATCCAGCT 27279 ||| |||||||| || || || | | |||| |||||| | | | |||||| || Sbjct 43067 GGGCAATTTCCGCAATCTGTTTTTCCATTCGCCCGGCGGCAAAGAGAAAGCCATCCAACT 43126 Query 27280 CATTCCGGTTTCCGAGGTCACGGCGAAAGACGAGTTCTTCAACATCAAGAATGTCACGCG 27339 | || | ||||| |||| || || || || |||||||||||||| || | || Sbjct 43127 GCTGCCCATCGGCGAGGCGGCGGCCAAGGATGAATTTTTCAACATCAAGAACGTGAGCCG 43186 Query 27340 CGACGACTTGCTCGCGGCGCATCGCATCCCGCCTCAGCTCATGGGGATCGTGCCGAGCAA 27399 ||| ||| | || || || ||| | || || ||||||||||| | |||||| ||| Sbjct 43187 CGATGACCAATTGGCCGCCCACCGCGTGCCTCCGCAGCTCATGGGCGTGGTGCCGGCCAA 43246 Query 27400 TACCGGCGGATTCGGCGCAACGGACAAGGCCGCCGAGGTGTTCG-GCGTGAATGAAATCG 27458 | | || || ||||||| || ||| || || |||||||| ||| || |||||| Sbjct 43247 TGCAGGTGGCTTCGGCGATGTGGTCAACGCTGCACGGGTGTTCGCGCG-CAACGAAATCC 43305 Query 27459 CGCCCCTGCAACGGCGCTTTGAACAG---CTCAACGAGTGGATCGGCGA 27504 ||||||||| |||||| | ||| |||| || ||||| || || Sbjct 43306 AGCCCCTGCAGACGCGCTTCGCGCAGGCCATCAATGAATGGATGGGGGA 43354 Score = 159 bits (176), Expect = 7e-35 Identities = 486/738 (66%), Gaps = 16/738 (2%) Strand=Plus/Plus Query 22679 GAAGAAAGGCACGGTCACGGCCGGCAGGTTGCCGATGCGCTTCTGGCTCTGGATCACGTC 22738 |||||||||||||||||||||| | | ||| | |||| |||||||| | || ||| Sbjct 38663 GAAGAAAGGCACGGTCACGGCCTGGCTGCCGCCCAGGCGCATCTGGCTCACCACCATGTC 38722 Query 22739 AGCGGCCATCATTTCGGTCGGCGCTTGGGCCTTGTTGACGAGCGGGAAATACTTGTCGTG 22798 || |||| ||| | ||| | | ||||| |||| ||||| |||||| || Sbjct 38723 GGCCGCCAGGCGCTCGCTGGGCAGATCGTTGTTGTTCACGATGGGGAACAGCTTGTCATG 38782 Query 22799 CAACAGGCCGCGACCGCACATCACGACGAGAGCCGTGTCGTCTTGGTGCCACGGGTCGAT 22858 || |||| | | ||| || || ||| ||| || | ||||||||| || || Sbjct 38783 CATCAGGTCATCGCTGCAGATGGCGCGCAGATCCGGGTGCTTGCGGTGCCACGAATCAAT 38842 Query 22859 CATGCTCGCGACCAG-ATCGGCGACGAGCGCATCGAGGTTCGCGTAATCGCCGGCCGCGC 22917 || || | | | ||| | | || || ||||||||| ||| ||||| ||| | Sbjct 38843 CA-GCGAGTGCTTGGCATCCATGGCCAGGGCGTCGAGGTTCTTGTAGTCGCCACCCGGTC 38901 Query 22918 CGACGACGATCTTGCCGGCCGTCTTCGCGCCTTCGTCCATCACGCGTTGCGGGGCTTGGT 22977 | || || |||||| ||| ||| ||| ||| ||||| | || || | | Sbjct 38902 CCACAGTGACCTTGCCCGCCACCTT---GCCAGAAGACATGACGCGCTCGGGCGCCTCTT 38958 Query 22978 CGCGCATGCGTTGCAACCAGCCCTTATTGACGTCCTGCAACAGCGGGTTAGCTGCACGGT 23037 |||||| ||| |||| ||| ||||| | | ||||||| || ||||| || | || Sbjct 38959 CGCGCAGGCGCTGCAGCCACCCCTTGGTCAGATCCTGCAGCAAAGGGTTGGCGGTCAAGT 39018 Query 23038 CGGACGTTGCCGCACGCGAAC-GGCCGTTGAAACCGATCGCGATGCGGTCGAGCGCTTGA 23096 || || ||| || | |||||| | || | | ||||||||| ||||| | Sbjct 39019 TGGTGGTGGCC-TTGGCTTCCTTGCCGTTCCATCCCACCATGATGCGGTCCAGCGCATTG 39077 Query 23097 CGGCGCACGATCACGTCGCGAATGCGGGTCTGGAAGTCGGGAAACTTCGCCCACGCGTCG 23156 || | |||| ||||| || || ||| |||||||| || | |||||| || ||| Sbjct 39078 CGTTCGGCAATCAGGTCGCTGATACGCACCTGAAAGTCGGGGAAGTGCGCCCAGGCATCG 39137 Query 23157 AGCAGCGCATACGTGATGTGCGAGTCGAAATTCGTTTGCGTGCAGTTGTAACCGTTCTCG 23216 |||| ||| ||| ||||||| | ||| ||| | ||| ||||| ||| ||| ||| | Sbjct 39138 AGCATCGCGTACTTGATGTGGGTATCGGAATCAATCTGCAGGCAGTGGTATCCGGTCTTG 39197 Query 23217 TCGAGGTCGGTCACATC--AGCCGTTGCGCGATCCTTCTGC-GTCGTGTCGGTCGTGCTC 23273 || | | ||| ||| | ||||| | || || || || ||||| || ||| Sbjct 39198 TCCTTGCCTGTCGGATCTTTGGTCTTGCGGGGGCCGTCAGCGGTGGTGTCCGTGCGGCTG 39257 Query 23274 GCGATCGG-CGAGCCGACGCCGAGGCCGAGCTTTGCGCCTTCCTTGTCGG--TCACGCCG 23330 |||| || || | | | || || || | |||| |||| | || ||| |||| Sbjct 39258 GCGACGGGACGGGTC-AGGCTCAGACCCACCTTTTCGCCCTGCT--GCGGCACCACGGGC 39314 Query 23331 ATAACGTTGATGCGTTTCAGAAAGTCGCTCGATTCCTGAATGCGGGTTTCGAGCTTTTGT 23390 | | ||||||| ||||| || ||||||||||| ||||||||||| ||||| || Sbjct 39315 AGGATGTTGATGGACTTCAGGAATGAACTCGATTCCTGCATGCGGGTTTCCAGCTTCTGC 39374 Query 23391 TGCACGCTCGGCGACACG 23408 |||||| ||||||| ||| Sbjct 39375 TGCACGGTCGGCGAGACG 39392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103274328600482