Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_015279.1
Length=190789
Score E
Sequences producing significant alignments: (Bits) Value
seq9429 187 3e-42
seq5226 104 3e-17
seq7041 93.3 5e-14
seq7835 86.0 8e-12
>seq9429
Length=202388
Score = 187 bits (206), Expect = 3e-42
Identities = 316/452 (70%), Gaps = 12/452 (3%)
Strand=Plus/Plus
Query 145109 AAGATTTTCTACTCTGGTTCTGCCTGTATGTACCCAGAGTATGCTCAGGAAGAAACAAAC 145168
||| ||||||| || || ||||| ||||| |||| |||| ||||||||| || |
Sbjct 3246 AAGGTTTTCTATTCGTCGTCCGCCTGCATGTATCCAGCGTATAATCAGGAAGACCCAGAT 3305
Query 145169 AATCCTGGATTG-AGAGAAAATGACGCATACCCCGCAGCACCAGACTCCGAATACGGGTG 145227
||||| | |||| || ||| | || || |||||||| || ||||| ||||| || ||
Sbjct 3306 AATCC-GAATTGCAGTGAAGAGTCGGCTTATCCCGCAGCGCCTGACTCTGAATATGGTTG 3364
Query 145228 GGAAAAACTCTTCAGCGAGCGGTTGTATCTCGCTTATAATCGGAATCACGGCATTCCTGT 145287
|||||| || ||| ||||| ||||||||||||||||| || || ||||||| |
Sbjct 3365 GGAAAAGCTGTTCTCGGAGCGTTTGTATCTCGCTTATAACCGCAACTACGGCATGGCGAA 3424
Query 145288 TAGGATTGCTCGCTACCACAATATCTTCGGACCAGAAGGAACCTGGGAAGGTGGAAGAGA 145347
|| | ||| | || || ||||| || || ||||| || || ||| | || |||| |||
Sbjct 3425 CCGGGTGGCTAGATATCATAATATTTTTGGCCCAGAGGGGACGTGGCAGGGCGGAAAAGA 3484
Query 145348 AAAAGCACCAGCTGCAATCTGCCGCAAAGTCGC-TTACCTCCCAACAGAGGGTGGTGCTA 145406
||| || || || ||| ||||||| || || || | | |||||| |||| |
Sbjct 3485 AAAGGCTCCCGCGGCAGTCTGCCGTAAGGTGGCACTCGCCGCCAACA----ACGGTGAAA 3540
Query 145407 TTGAAGTGTGGGGTGATGGAGAACAGACAAGATCCTTCCTGTATATCGATGAATGCATTG 145466
| || | ||||| ||||| | ||||| | || ||||| ||||| ||||||||| |||
Sbjct 3541 TCGAGATATGGGGAGATGGTAACCAGACGCGCTCGTTCCTCTATATTGATGAATGCGTTG 3600
Query 145467 AAGCAACCAGGAGACTGA----TGGACAGTGACTTTATGGGTCCTGTGAACATTGGTTCT 145522
| | ||| |||| | | | | || | ||| || || |||||||| ||
Sbjct 3601 AGGGTACCGTTCGACTCACGCGTTCCCCATCGTTTGAAGGG-CCGGTAAACATTGGCTCC 3659
Query 145523 GAAGAGATGGTTACCATCAACGAATTGGTAGA 145554
|| |||||||| || ||||| | ||||| ||
Sbjct 3660 GATGAGATGGTGACGATCAATCAGTTGGTCGA 3691
>seq5226
Length=67962
Score = 104 bits (114), Expect = 3e-17
Identities = 75/87 (86%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 141678 GGAAGAGTGGTCGAGTGGTTTATGGCACTGGTCTTGAAAACCAGCGAGGGTGCAAGTTCT 141737
||||| |||| ||||||||||| |||| ||||||||||||| || ||||||||| ||
Sbjct 25632 GGAAGTGTGGCCGAGTGGTTTAAGGCAGCGGTCTTGAAAACCGCCGTGGGTGCAAGCTCA 25573
Query 141738 CCGTGGGTTCAAATCCCACCTCTTCCG 141764
|||||||||| ||||||||| ||||||
Sbjct 25572 CCGTGGGTTCGAATCCCACCGCTTCCG 25546
>seq7041
Length=191181
Score = 93.3 bits (102), Expect = 5e-14
Identities = 62/69 (90%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 140961 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTAGGTTCGAGTCCTACC 141020
||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||| |
Sbjct 50773 TAGCTCAACTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCGCAGGTTCGAGTCCTGCA 50832
Query 141021 TGGGTCGCC 141029
||||||||
Sbjct 50833 GGGGTCGCC 50841
>seq7835
Length=204203
Score = 86.0 bits (94), Expect = 8e-12
Identities = 71/87 (82%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 141678 GGAAGAGTGGTCGAGTGGTTTATGGCACTGGTCTTGAAAACCAGCGAGGGTGCAAGTTCT 141737
||||| |||| ||| |||||| |||| ||||||||||||| |||||||| ||| ||
Sbjct 60565 GGAAGCGTGGCAGAGCGGTTTAATGCACCGGTCTTGAAAACCGACGAGGGTGTGAGTCCT 60624
Query 141738 CCGTGGGTTCAAATCCCACCTCTTCCG 141764
||||| |||| |||| |||| ||||||
Sbjct 60625 CCGTGAGTTCGAATCTCACCGCTTCCG 60651
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 610281900432360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |