Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq9429 187 3e-42 seq5226 104 3e-17 seq7041 93.3 5e-14 seq7835 86.0 8e-12 >seq9429 Length=202388 Score = 187 bits (206), Expect = 3e-42 Identities = 316/452 (70%), Gaps = 12/452 (3%) Strand=Plus/Plus Query 145109 AAGATTTTCTACTCTGGTTCTGCCTGTATGTACCCAGAGTATGCTCAGGAAGAAACAAAC 145168 ||| ||||||| || || ||||| ||||| |||| |||| ||||||||| || | Sbjct 3246 AAGGTTTTCTATTCGTCGTCCGCCTGCATGTATCCAGCGTATAATCAGGAAGACCCAGAT 3305 Query 145169 AATCCTGGATTG-AGAGAAAATGACGCATACCCCGCAGCACCAGACTCCGAATACGGGTG 145227 ||||| | |||| || ||| | || || |||||||| || ||||| ||||| || || Sbjct 3306 AATCC-GAATTGCAGTGAAGAGTCGGCTTATCCCGCAGCGCCTGACTCTGAATATGGTTG 3364 Query 145228 GGAAAAACTCTTCAGCGAGCGGTTGTATCTCGCTTATAATCGGAATCACGGCATTCCTGT 145287 |||||| || ||| ||||| ||||||||||||||||| || || ||||||| | Sbjct 3365 GGAAAAGCTGTTCTCGGAGCGTTTGTATCTCGCTTATAACCGCAACTACGGCATGGCGAA 3424 Query 145288 TAGGATTGCTCGCTACCACAATATCTTCGGACCAGAAGGAACCTGGGAAGGTGGAAGAGA 145347 || | ||| | || || ||||| || || ||||| || || ||| | || |||| ||| Sbjct 3425 CCGGGTGGCTAGATATCATAATATTTTTGGCCCAGAGGGGACGTGGCAGGGCGGAAAAGA 3484 Query 145348 AAAAGCACCAGCTGCAATCTGCCGCAAAGTCGC-TTACCTCCCAACAGAGGGTGGTGCTA 145406 ||| || || || ||| ||||||| || || || | | |||||| |||| | Sbjct 3485 AAAGGCTCCCGCGGCAGTCTGCCGTAAGGTGGCACTCGCCGCCAACA----ACGGTGAAA 3540 Query 145407 TTGAAGTGTGGGGTGATGGAGAACAGACAAGATCCTTCCTGTATATCGATGAATGCATTG 145466 | || | ||||| ||||| | ||||| | || ||||| ||||| ||||||||| ||| Sbjct 3541 TCGAGATATGGGGAGATGGTAACCAGACGCGCTCGTTCCTCTATATTGATGAATGCGTTG 3600 Query 145467 AAGCAACCAGGAGACTGA----TGGACAGTGACTTTATGGGTCCTGTGAACATTGGTTCT 145522 | | ||| |||| | | | | || | ||| || || |||||||| || Sbjct 3601 AGGGTACCGTTCGACTCACGCGTTCCCCATCGTTTGAAGGG-CCGGTAAACATTGGCTCC 3659 Query 145523 GAAGAGATGGTTACCATCAACGAATTGGTAGA 145554 || |||||||| || ||||| | ||||| || Sbjct 3660 GATGAGATGGTGACGATCAATCAGTTGGTCGA 3691 >seq5226 Length=67962 Score = 104 bits (114), Expect = 3e-17 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 141678 GGAAGAGTGGTCGAGTGGTTTATGGCACTGGTCTTGAAAACCAGCGAGGGTGCAAGTTCT 141737 ||||| |||| ||||||||||| |||| ||||||||||||| || ||||||||| || Sbjct 25632 GGAAGTGTGGCCGAGTGGTTTAAGGCAGCGGTCTTGAAAACCGCCGTGGGTGCAAGCTCA 25573 Query 141738 CCGTGGGTTCAAATCCCACCTCTTCCG 141764 |||||||||| ||||||||| |||||| Sbjct 25572 CCGTGGGTTCGAATCCCACCGCTTCCG 25546 >seq7041 Length=191181 Score = 93.3 bits (102), Expect = 5e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 140961 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTAGGTTCGAGTCCTACC 141020 ||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||| | Sbjct 50773 TAGCTCAACTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCGCAGGTTCGAGTCCTGCA 50832 Query 141021 TGGGTCGCC 141029 |||||||| Sbjct 50833 GGGGTCGCC 50841 >seq7835 Length=204203 Score = 86.0 bits (94), Expect = 8e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 141678 GGAAGAGTGGTCGAGTGGTTTATGGCACTGGTCTTGAAAACCAGCGAGGGTGCAAGTTCT 141737 ||||| |||| ||| |||||| |||| ||||||||||||| |||||||| ||| || Sbjct 60565 GGAAGCGTGGCAGAGCGGTTTAATGCACCGGTCTTGAAAACCGACGAGGGTGTGAGTCCT 60624 Query 141738 CCGTGGGTTCAAATCCCACCTCTTCCG 141764 ||||| |||| |||| |||| |||||| Sbjct 60625 CCGTGAGTTCGAATCTCACCGCTTCCG 60651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610281900432360