Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq9429 188 1e-42 >seq9429 Length=202388 Score = 188 bits (208), Expect = 1e-42 Identities = 415/615 (67%), Gaps = 38/615 (6%) Strand=Plus/Plus Query 200878 TTTGATGAGATCTACCAGTTTGCTGCCGACATGGGTGGTGCTGGATACATCTTTACAGAT 200937 ||||| ||| | || ||| | || || || ||||| ||||| || || || ||||| | Sbjct 3105 TTTGACGAGGTTTATCAGCTCGCAGCGGATATGGGCGGTGCCGGTTATATTTTTACCGGC 3164 Query 200938 GAACACTCTGCTGACATCATGCACAACTCAGCAACTATTAATTTGAATGTT-CTGAACGA 200996 |||||| || ||||| ||||| ||||| || || ||||| | ||| | |||| Sbjct 3165 GAACACGACGCCGACATAATGCATAACTCTGCGACGATTAACCTCAATATCGCTGACGTT 3224 Query 200997 ACAAGTTCAACTTAATAGGTTACTCGGTACAAACAAAACTAAGATCTTCTATTCTAGTTC 201056 | || ||| ||||| ||||| || | |||||||| || Sbjct 3225 GCCAGAA-AACGTAATAT---------------CAAAA---AGGTTTTCTATTCGTCGTC 3265 Query 201057 TGCTTGTATGTACCCAGAACATAATCAATTAGATCCTGACAATCCTGATTGCCGTGAAAA 201116 || || ||||| |||| ||||||| ||| || || ||||| ||||| ||||| | Sbjct 3266 CGCCTGCATGTATCCAGCGTATAATCAGGAAGACCCAGATAATCCGAATTGCAGTGAAGA 3325 Query 201117 TTCCGCCTACCCAGCAAATCCAGATTCAGAATACGGATGGGAAAAACTCTTTTCGGAGAG 201176 || || || || ||| || || || ||||| || |||||||| || || |||||| | Sbjct 3326 GTCGGCTTATCCCGCAGCGCCTGACTCTGAATATGGTTGGGAAAAGCTGTTCTCGGAGCG 3385 Query 201177 ACTATATTTTGCCTATGCTCGCAACTATGACCTTGACGTTTCTG-TGGCTCGCTATCATA 201235 | ||| | || ||| |||||||| | | | | || | | ||||| | ||||||| Sbjct 3386 TTTGTATCTCGCTTATAACCGCAACTACGGCATGG-CGAACCGGGTGGCTAGATATCATA 3444 Query 201236 ACATTTTTGGTCCTGAAGGGACTTGGGATGGCGGAAAAGAAAAAGCCCCTGCAGCCATCT 201295 | |||||||| || || ||||| ||| | |||||||||||||| || || || || ||| Sbjct 3445 ATATTTTTGGCCCAGAGGGGACGTGGCAGGGCGGAAAAGAAAAGGCTCCCGCGGCAGTCT 3504 Query 201296 GTAGGAAGGTCGCA-TCTCTACCAGAAACAGGAGGCACCATTGAGGTGTGGGGAGACGGT 201354 | | ||||| ||| || | ||| ||| || || ||| | |||||||| ||| Sbjct 3505 GCCGTAAGGTGGCACTCGCCGCCAACAAC----GGTGAAATCGAGATATGGGGAGATGGT 3560 Query 201355 TTGCAAACTAGATCGTTCCTTTACATTGATGAGTGTATCGAAGCAACTCGTAGGTTGATT 201414 || || | |||||||| || |||||||| || | || | || ||| | || | Sbjct 3561 AACCAGACGCGCTCGTTCCTCTATATTGATGAATGCGTTGAGGGTAC-CGT---TCGACT 3616 Query 201415 GA----TT---CTGACTTTGAAGGACCTGTAAACATTGGTTCTGAAGAGATGGTCACTAT 201467 | || | |||||||| || ||||||||||| || || |||||||| || || Sbjct 3617 CACGCGTTCCCCATCGTTTGAAGGGCCGGTAAACATTGGCTCCGATGAGATGGTGACGAT 3676 Query 201468 CAATGAGTTGGTAGA 201482 |||| ||||||| || Sbjct 3677 CAATCAGTTGGTCGA 3691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744941347702320