Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_015287.1
Length=232878
Score E
Sequences producing significant alignments: (Bits) Value
seq9429 188 1e-42
>seq9429
Length=202388
Score = 188 bits (208), Expect = 1e-42
Identities = 415/615 (67%), Gaps = 38/615 (6%)
Strand=Plus/Plus
Query 200878 TTTGATGAGATCTACCAGTTTGCTGCCGACATGGGTGGTGCTGGATACATCTTTACAGAT 200937
||||| ||| | || ||| | || || || ||||| ||||| || || || ||||| |
Sbjct 3105 TTTGACGAGGTTTATCAGCTCGCAGCGGATATGGGCGGTGCCGGTTATATTTTTACCGGC 3164
Query 200938 GAACACTCTGCTGACATCATGCACAACTCAGCAACTATTAATTTGAATGTT-CTGAACGA 200996
|||||| || ||||| ||||| ||||| || || ||||| | ||| | ||||
Sbjct 3165 GAACACGACGCCGACATAATGCATAACTCTGCGACGATTAACCTCAATATCGCTGACGTT 3224
Query 200997 ACAAGTTCAACTTAATAGGTTACTCGGTACAAACAAAACTAAGATCTTCTATTCTAGTTC 201056
| || ||| ||||| ||||| || | |||||||| ||
Sbjct 3225 GCCAGAA-AACGTAATAT---------------CAAAA---AGGTTTTCTATTCGTCGTC 3265
Query 201057 TGCTTGTATGTACCCAGAACATAATCAATTAGATCCTGACAATCCTGATTGCCGTGAAAA 201116
|| || ||||| |||| ||||||| ||| || || ||||| ||||| ||||| |
Sbjct 3266 CGCCTGCATGTATCCAGCGTATAATCAGGAAGACCCAGATAATCCGAATTGCAGTGAAGA 3325
Query 201117 TTCCGCCTACCCAGCAAATCCAGATTCAGAATACGGATGGGAAAAACTCTTTTCGGAGAG 201176
|| || || || ||| || || || ||||| || |||||||| || || |||||| |
Sbjct 3326 GTCGGCTTATCCCGCAGCGCCTGACTCTGAATATGGTTGGGAAAAGCTGTTCTCGGAGCG 3385
Query 201177 ACTATATTTTGCCTATGCTCGCAACTATGACCTTGACGTTTCTG-TGGCTCGCTATCATA 201235
| ||| | || ||| |||||||| | | | | || | | ||||| | |||||||
Sbjct 3386 TTTGTATCTCGCTTATAACCGCAACTACGGCATGG-CGAACCGGGTGGCTAGATATCATA 3444
Query 201236 ACATTTTTGGTCCTGAAGGGACTTGGGATGGCGGAAAAGAAAAAGCCCCTGCAGCCATCT 201295
| |||||||| || || ||||| ||| | |||||||||||||| || || || || |||
Sbjct 3445 ATATTTTTGGCCCAGAGGGGACGTGGCAGGGCGGAAAAGAAAAGGCTCCCGCGGCAGTCT 3504
Query 201296 GTAGGAAGGTCGCA-TCTCTACCAGAAACAGGAGGCACCATTGAGGTGTGGGGAGACGGT 201354
| | ||||| ||| || | ||| ||| || || ||| | |||||||| |||
Sbjct 3505 GCCGTAAGGTGGCACTCGCCGCCAACAAC----GGTGAAATCGAGATATGGGGAGATGGT 3560
Query 201355 TTGCAAACTAGATCGTTCCTTTACATTGATGAGTGTATCGAAGCAACTCGTAGGTTGATT 201414
|| || | |||||||| || |||||||| || | || | || ||| | || |
Sbjct 3561 AACCAGACGCGCTCGTTCCTCTATATTGATGAATGCGTTGAGGGTAC-CGT---TCGACT 3616
Query 201415 GA----TT---CTGACTTTGAAGGACCTGTAAACATTGGTTCTGAAGAGATGGTCACTAT 201467
| || | |||||||| || ||||||||||| || || |||||||| || ||
Sbjct 3617 CACGCGTTCCCCATCGTTTGAAGGGCCGGTAAACATTGGCTCCGATGAGATGGTGACGAT 3676
Query 201468 CAATGAGTTGGTAGA 201482
|||| ||||||| ||
Sbjct 3677 CAATCAGTTGGTCGA 3691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 744941347702320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |