Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq9956 86.0 8e-12 seq9925 86.0 8e-12 >seq9956 Length=123604 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 163497 ATTCCTCTATAGCTCAGTTGGTAGAGCACGGAACTGTTAATTCTGTTGTCCCTGGTTCGA 163556 ||||||| |||||||||| ||||||||| | ||||||||| | |||||||||||||| Sbjct 116395 ATTCCTCGATAGCTCAGTCGGTAGAGCAACGGACTGTTAATCCGTGTGTCCCTGGTTCGA 116454 Query 163557 GTCCAGGTGGAGGAG 163571 | |||||| |||||| Sbjct 116455 GCCCAGGTCGAGGAG 116469 >seq9925 Length=47282 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 163497 ATTCCTCTATAGCTCAGTTGGTAGAGCACGGAACTGTTAATTCTGTTGTCCCTGGTTCGA 163556 ||||||| ||||||||||||||||||| | | ||||||||| | ||||||||||||| Sbjct 28034 ATTCCTCAATAGCTCAGTTGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGA 27975 Query 163557 GTCCAGGTGGAGGAG 163571 | |||||| |||||| Sbjct 27974 GCCCAGGTTGAGGAG 27960 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 163497 ATTCCTCTATAGCTCAGTTGGTAGAGCACGGAACTGTTAATTCTGTTGTCCCTGGTTCGA 163556 ||||||| ||||||||||||||||||| | | ||||||||| | ||||||||||||| Sbjct 28155 ATTCCTCAATAGCTCAGTTGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGA 28096 Query 163557 GTCCAGGTGGAGGAG 163571 | |||||| |||||| Sbjct 28095 GCCCAGGTTGAGGAG 28081 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 163498 TTCCTCTATAGCTCAGTTGGTAGAGCACGGAACTGTTAATTCTGTTGTCCCTGGTTCGAG 163557 |||||| ||||||||||||||||||| | | ||||||||| | |||||||||||||| Sbjct 28282 TTCCTCAATAGCTCAGTTGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGAG 28223 Query 163558 TCCAGGTGGAGGAG 163571 |||||| |||||| Sbjct 28222 CCCAGGTTGAGGAG 28209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611580855874200