Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_015295.1 Length=47279 Score E Sequences producing significant alignments: (Bits) Value seq11405 102 2e-17 seq12839 86.0 2e-12 >seq11405 Length=110570 Score = 102 bits (112), Expect = 2e-17 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 29842 TGGTGATTACTGCGTTAACGAGCTGTGCTTCATAGCCCAAAGTGCCGTTTACAAGGTGTG 29901 || ||||||| ||| || | ||| || ||||||||||| |||||||| || ||||| | Sbjct 79911 TGTTGATTACGGCGGCCACCAACTGGGCCTCATAGCCCAACGTGCCGTTCACCAGGTGGG 79970 Query 29902 TTTTTTGAGCCACGGCGAAGGGATTCATTCCCCACTGCGCGGCCTGTAGCG 29952 | || || |||||||||||||| ||||| ||||||||| || ||| |||| Sbjct 79971 TCTTCTGGGCCACGGCGAAGGGGTTCATGCCCCACTGCATGGACTGCAGCG 80021 >seq12839 Length=204338 Score = 86.0 bits (94), Expect = 2e-12 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 37615 TGCCCGGTTATAGCATTGTCTCAGTTGAACCGTAATTTGGAGCAGCGTGCAAACAAGCGA 37674 ||||| ||||| ||| |||| ||| | |||||| | |||| | ||| |||| || || Sbjct 81900 TGCCCTGTTATTGCACTGTCACAGCTTAACCGTTCTCTGGAAAACCGTCCAAATAAACGT 81841 Query 37675 CCGTGCAATG-CCGACTTACGTGAGTCGGGCGTAATCGAGCAGGAAGCTGATGTGATTTT 37733 ||| | |||| ||||||||||||| || || | |||||||||||| || ||| | ||| | Sbjct 81840 CCG-GTAATGTCCGACTTACGTGAATCAGGTGCAATCGAGCAGGATGCCGATTTAATTAT 81782 Query 37734 CATGGTTTATCGCGACGAG 37752 | |||| || || ||| Sbjct 81781 GTTTATTTACCGTGATGAG 81763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151144166715678